Data Retrieval:
Database Description
Description of Library construction
Download Raw Data
EST Retrieval from Database (Not available)
Lettuce Genetic Map raw data and marker scores
Data Analysis:
Contig Assembly Viewer
Lettuce Genetic Map Viewer
Sequence Retrieval by Keywords (Not available)
Search Arabidopsis BLAST results
by At**** numbers
Sequence Manipulation Suite
DNA Sequence Translation in six frames
Software & Scripts:
Python Contig Viewer
Python BLAST info viewer
GenoPlayer
SNP/INDEL discovery pipeline
detailed description how to find SNP/INDEL candidates in EST CAP3 assembly
Codon Usage Pipeline
DNA Six Frame Translation (batch run)
GenBank Parser
BLAST Parser
Genetic Map 2D Plot (CheckMatrix)
powerful visualization tool to validate genetic maps
Table Manipulation/Transformation scripts
Graphical Data Presentations:
Conserved Ortholog Set (COS) Markers candidates (dataset derived by year 2002)
Conserved Ortholog Set (COS) Markers candidates [lettuce, sunflower, tomato, soybean, maize and rice]
(dataset derived by year 2003)
Graphical representation of BLAST search against Arabidopsis genome:
Validation, Visualization, and Web Presentation of EST Collection
Data Processing for Genetic Mapping
MS Excel templates for genetic mapping
Overview of Genetic Mapping Pipeline at CGPDB and future directions
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