Compositae (Asteraceae) EST Assembly Info:
###
ASSEMBLY_ID
ASMBL_TYPE
GENUS
EPITHET
COMM_NAME
INTER_SPEC
COMMENTS
CAP3_PARAM
N_SEQS/ESTs
N_UNIGENES
N_CONTIGS
ATH_HITS%
UCO_FRACT
DOWNLOAD_SEQs
DOWNLOAD_ASSEMBLY
DOWNLOAD_CONTIG_INFO
DOWNLOAD_CAP3_ALIGNMENTS
ATH_BLAST_INFO_BEST_HIT
000
CART_TINC.CSA1
mono spec
Carthamus
tinctorius
Safflower
---
---
-o 80 -p 90
40874
19395
7154
78.6
0.8
GB_ESTs_Feb_2007.sp.Cart_tinc.clean.fasta
GB_ESTs_Feb_2007.sp.Cart_tinc.clean.assembly
GB_ESTs_Feb_2007.sp.Cart_tinc.clean.cap3.80.90.Info
GB_ESTs_Feb_2007.sp.Cart_tinc.clean.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.sp.Cart_tinc.clean.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
001
CENT_MACU.CSA1
mono spec
Centaurea
maculosa
Spotted Knapweed
---
---
-o 80 -p 90
39957
20922
7122
79.3
0.8
GB_ESTs_Feb_2007.sp.Cent_macu.clean.fasta
GB_ESTs_Feb_2007.sp.Cent_macu.clean.assembly
GB_ESTs_Feb_2007.sp.Cent_macu.clean.cap3.80.90.Info
GB_ESTs_Feb_2007.sp.Cent_macu.clean.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.sp.Cent_macu.clean.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
002
CENT_SOLS.CSA1
mono spec
Centaurea
solstitialis
Yellow Starthistle
---
---
-o 80 -p 90
40406
22917
7158
77.6
0.79
GB_ESTs_Feb_2007.sp.Cent_sols.clean.fasta
GB_ESTs_Feb_2007.sp.Cent_sols.clean.assembly
GB_ESTs_Feb_2007.sp.Cent_sols.clean.cap3.80.90.Info
GB_ESTs_Feb_2007.sp.Cent_sols.clean.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.sp.Cent_sols.clean.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
003
CICH_ENDI.CSA1
mono spec
Cichorium
endivia
Endive
---
---
-o 80 -p 90
30170
18951
5295
76.7
0.7
GB_ESTs_Feb_2007.sp.Cich_endi.clean.fasta
GB_ESTs_Feb_2007.sp.Cich_endi.clean.assembly
GB_ESTs_Feb_2007.sp.Cich_endi.clean.cap3.80.90.Info
GB_ESTs_Feb_2007.sp.Cich_endi.clean.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.sp.Cich_endi.clean.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
004
CICH_INTY.CSA1
mono spec
Cichorium
intybus
Chicory
---
---
-o 80 -p 90
41704
22038
7575
75.8
0.77
GB_ESTs_Feb_2007.sp.Cich_inty.clean.fasta
GB_ESTs_Feb_2007.sp.Cich_inty.clean.assembly
GB_ESTs_Feb_2007.sp.Cich_inty.clean.cap3.80.90.Info
GB_ESTs_Feb_2007.sp.Cich_inty.clean.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.sp.Cich_inty.clean.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
005
GERB_HYBR.CSA1
mono spec
Gerbera
hybrid
Gerbera
---
cultivars: Terra Nero and Terra Regina
-o 80 -p 90
16848
8665
2523
64
0.33
GB_ESTs_Feb_2007.sp.Gerb_hybr.clean.fasta
GB_ESTs_Feb_2007.sp.Gerb_hybr.clean.assembly
GB_ESTs_Feb_2007.sp.Gerb_hybr.clean.cap3.80.90.Info
GB_ESTs_Feb_2007.sp.Gerb_hybr.clean.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.sp.Gerb_hybr.clean.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
006
HELI_ANNU.CSA1
mono spec
Helianthus
annuus
Common Sunflower
---
EST sequences from several different strains/cultivars
-o 80 -p 90
93428
31605
10796
57
0.66
GB_ESTs_Feb_2007.sp.Heli_annu.clean.fasta
GB_ESTs_Feb_2007.sp.Heli_annu.clean.assembly
GB_ESTs_Feb_2007.sp.Heli_annu.clean.cap3.80.90.Info
GB_ESTs_Feb_2007.sp.Heli_annu.clean.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.sp.Heli_annu.clean.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
007
HELI_ARGO.CSA1
mono spec
Helianthus
argophyllus
Silverleaf Sunflower
---
---
-o 80 -p 90
35702
17839
5592
72
0.6
GB_ESTs_Feb_2007.sp.Heli_argo.clean.fasta
GB_ESTs_Feb_2007.sp.Heli_argo.clean.assembly
GB_ESTs_Feb_2007.sp.Heli_argo.clean.cap3.80.90.Info
GB_ESTs_Feb_2007.sp.Heli_argo.clean.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.sp.Heli_argo.clean.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
008
HELI_CILI.CSA1
mono spec
Helianthus
ciliaris
Texas Blueweed
---
---
-o 80 -p 90
21589
14857
3979
80.5
0.68
GB_ESTs_Feb_2007.sp.Heli_cili.clean.fasta
GB_ESTs_Feb_2007.sp.Heli_cili.clean.assembly
GB_ESTs_Feb_2007.sp.Heli_cili.clean.cap3.80.90.Info
GB_ESTs_Feb_2007.sp.Heli_cili.clean.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.sp.Heli_cili.clean.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
009
HELI_EXIL.CSA1
mono spec
Helianthus
exilis
Serpentine Sunflower
---
---
-o 80 -p 90
33958
19784
6279
77.4
0.7
GB_ESTs_Feb_2007.sp.Heli_exil.clean.fasta
GB_ESTs_Feb_2007.sp.Heli_exil.clean.assembly
GB_ESTs_Feb_2007.sp.Heli_exil.clean.cap3.80.90.Info
GB_ESTs_Feb_2007.sp.Heli_exil.clean.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.sp.Heli_exil.clean.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
010
HELI_PARA.CSA1
mono spec
Helianthus
paradoxus
Puzzle Sunflower
---
---
-o 80 -p 90
30503
17874
4765
72.7
0.64
GB_ESTs_Feb_2007.sp.Heli_para.clean.fasta
GB_ESTs_Feb_2007.sp.Heli_para.clean.assembly
GB_ESTs_Feb_2007.sp.Heli_para.clean.cap3.80.90.Info
GB_ESTs_Feb_2007.sp.Heli_para.clean.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.sp.Heli_para.clean.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
011
HELI_PETI.CSA1
mono spec
Helianthus
petiolaris
Prairie Sunflower
---
---
-o 80 -p 90
27472
12982
4450
70
0.46
GB_ESTs_Feb_2007.sp.Heli_peti.clean.fasta
GB_ESTs_Feb_2007.sp.Heli_peti.clean.assembly
GB_ESTs_Feb_2007.sp.Heli_peti.clean.cap3.80.90.Info
GB_ESTs_Feb_2007.sp.Heli_peti.clean.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.sp.Heli_peti.clean.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
012
HELI_TUBE.CSA1
mono spec
Helianthus
tuberosus
Jerusalem Artichoke
---
---
-o 80 -p 90
40361
21994
7156
78.6
0.76
GB_ESTs_Feb_2007.sp.Heli_tube.clean.fasta
GB_ESTs_Feb_2007.sp.Heli_tube.clean.assembly
GB_ESTs_Feb_2007.sp.Heli_tube.clean.cap3.80.90.Info
GB_ESTs_Feb_2007.sp.Heli_tube.clean.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.sp.Heli_tube.clean.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
013
LACT_PERE.CSA1
mono spec
Lactuca
perennis
Blue Lettuce
---
---
-o 80 -p 90
29118
11472
4778
-1
0.5
GB_ESTs_Feb_2007.sp.Lact_pere.clean.fasta
GB_ESTs_Feb_2007.sp.Lact_pere.clean.assembly
GB_ESTs_Feb_2007.sp.Lact_pere.clean.cap3.80.90.Info
GB_ESTs_Feb_2007.sp.Lact_pere.clean.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.sp.Lact_pere.clean.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
014
LACT_SALI.CSA1
mono spec
Lactuca
saligna
Willowleaf Lettuce
---
---
-o 80 -p 90
30689
11491
5172
-1
0.55
GB_ESTs_Feb_2007.sp.Lact_sali.clean.fasta
GB_ESTs_Feb_2007.sp.Lact_sali.clean.assembly
GB_ESTs_Feb_2007.sp.Lact_sali.clean.cap3.80.90.Info
GB_ESTs_Feb_2007.sp.Lact_sali.clean.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.sp.Lact_sali.clean.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
015
LACT_SATI.CSA1
mono spec
Lactuca
sativa
Garden Lettuce
---
---
-o 80 -p 90
80735
26720
11625
-1
0.82
GB_ESTs_Feb_2007.sp.Lact_sati.clean.fasta
GB_ESTs_Feb_2007.sp.Lact_sati.clean.assembly
GB_ESTs_Feb_2007.sp.Lact_sati.clean.cap3.80.90.Info
GB_ESTs_Feb_2007.sp.Lact_sati.clean.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.sp.Lact_sati.clean.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
016
LACT_SERR.CSA1
mono spec
Lactuca
serriola
Prickly Lettuce
---
---
-o 80 -p 90
55452
19877
7653
-1
0.67
GB_ESTs_Feb_2007.sp.Lact_serr.clean.fasta
GB_ESTs_Feb_2007.sp.Lact_serr.clean.assembly
GB_ESTs_Feb_2007.sp.Lact_serr.clean.cap3.80.90.Info
GB_ESTs_Feb_2007.sp.Lact_serr.clean.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.sp.Lact_serr.clean.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
017
LACT_VIRO.CSA1
mono spec
Lactuca
virosa
Bitter Lettuce
---
---
-o 80 -p 90
30056
11865
5129
-1
0.48
GB_ESTs_Feb_2007.sp.Lact_viro.clean.fasta
GB_ESTs_Feb_2007.sp.Lact_viro.clean.assembly
GB_ESTs_Feb_2007.sp.Lact_viro.clean.cap3.80.90.Info
GB_ESTs_Feb_2007.sp.Lact_viro.clean.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.sp.Lact_viro.clean.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
018
SENE_05XM.CSA1
multi spec
Senecio
spp.
---
aethnensis cambrensis chrysanthemifolius squalidus vulgaris
EST sequences from five Senecio species
-o 80 -p 90
9797
5558
1526
-1
0.29
GB_ESTs_Feb_2007.sp.Sene_5x_m.clean.fasta
GB_ESTs_Feb_2007.sp.Sene_5x_m.clean.assembly
GB_ESTs_Feb_2007.sp.Sene_5x_m.clean.cap3.80.90.Info
GB_ESTs_Feb_2007.sp.Sene_5x_m.clean.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.sp.Sene_5x_m.clean.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
019
STEV_REBA.CSA1
mono spec
Stevia
rebaudiana
Stevia (sugarleaf)
---
---
-o 80 -p 90
5452
3345
709
-1
0.19
GB_ESTs_Feb_2007.sp.Stev_reba.clean.fasta
GB_ESTs_Feb_2007.sp.Stev_reba.clean.assembly
GB_ESTs_Feb_2007.sp.Stev_reba.clean.cap3.80.90.Info
GB_ESTs_Feb_2007.sp.Stev_reba.clean.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.sp.Stev_reba.clean.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
020
TARA_KOK-.CSA1
mono spec
Taraxacum
kok-saghyz
Russian Dandelion
---
---
-o 80 -p 90
4702
3363
811
-1
0.2
GB_ESTs_Feb_2007.sp.Tara_kok-.clean.fasta
GB_ESTs_Feb_2007.sp.Tara_kok-.clean.assembly
GB_ESTs_Feb_2007.sp.Tara_kok-.clean.cap3.80.90.Info
GB_ESTs_Feb_2007.sp.Tara_kok-.clean.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.sp.Tara_kok-.clean.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
021
TARA_OFFI.CSA1
mono spec
Taraxacum
officinale
Dandelion
---
---
-o 80 -p 90
41278
15761
6350
-1
0.56
GB_ESTs_Feb_2007.sp.Tara_offi.clean.fasta
GB_ESTs_Feb_2007.sp.Tara_offi.clean.assembly
GB_ESTs_Feb_2007.sp.Tara_offi.clean.cap3.80.90.Info
GB_ESTs_Feb_2007.sp.Tara_offi.clean.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.sp.Tara_offi.clean.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
022
ZINN_ELEG.CSA1
mono spec
Zinnia
elegans
Zinnia
---
---
-o 80 -p 90
17937
14651
2483
-1
0.52
GB_ESTs_Feb_2007.sp.Zinn_eleg.clean.fasta
GB_ESTs_Feb_2007.sp.Zinn_eleg.clean.assembly
GB_ESTs_Feb_2007.sp.Zinn_eleg.clean.cap3.80.90.Info
GB_ESTs_Feb_2007.sp.Zinn_eleg.clean.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.sp.Zinn_eleg.clean.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
023
HELI_07XM.CSA1
multi spec
Helianthus
spp.
---
annuus argophyllus ciliaris exilis paradoxus petiolaris tuberosus
assembly of the assemblies of 7 Helianthus species
-o 80 -p 90
136935
81726
28606
-1
0.99
GB_ESTs_Feb_2007.sp.Heli_07XM.clean.fasta
GB_ESTs_Feb_2007.sp.Heli_07XM.clean.assembly
GB_ESTs_Feb_2007.sp.Heli_07XM.clean.cap3.80.90.Info
GB_ESTs_Feb_2007.sp.Heli_07XM.clean.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.sp.Heli_07XM.clean.assembly.Contigs_Only.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
024
LACT_05XM.CSA1
multi spec
Lactuca
spp.
---
perennis saligna sativa serriola virosa
assembly of the assemblies of 5 Lactuca species
-o 80 -p 90
81425
50433
23240
-1
0.95
GB_ESTs_Feb_2007.sp.Lact_05XM.clean.fasta
GB_ESTs_Feb_2007.sp.Lact_05XM.clean.assembly
GB_ESTs_Feb_2007.sp.Lact_05XM.clean.cap3.80.90.Info
GB_ESTs_Feb_2007.sp.Lact_05XM.clean.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.sp.Lact_05XM.clean.assembly.Contigs_Only.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
025
COMP_11XM.CSA1
multi spec
[Compositae]
---
---
all 'others' than Helianthus and Lactuca
assembly of the assemblies of 11 Compositae species ('other' than Helianthus and Lactuca)
-o 80 -p 90
155566
137365
45466
-1
0.99
GB_ESTs_Feb_2007.sp.Others_11XM.clean.fasta
GB_ESTs_Feb_2007.sp.Others_11XM.clean.assembly
GB_ESTs_Feb_2007.sp.Others_11XM.clean.cap3.80.90.Info
GB_ESTs_Feb_2007.sp.Others_11XM.clean.cap3.80.90.Align.tar.gz
026
HELI_7CDS.CSA1
multi spec
Helianthus
spp.
---
annuus argophyllus ciliaris exilis paradoxus petiolaris tuberosus
assembly of the CDS regions only (EST fragments with homology to known plant genes)
-o 80 -p 90
144746
32272
17041
-1
-1
GB_ESTs_Feb_2007.x.Heli_7x_m.clean.CDS.nr.fasta
GB_ESTs_Feb_2007.x.Heli_7x_m.clean.CDS.nr.assembly
GB_ESTs_Feb_2007.x.Heli_7x_m.clean.CDS.nr.cap3.80.90.Info
GB_ESTs_Feb_2007.x.Heli_7x_m.clean.CDS.nr.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.x.Heli_7x_m.clean.CDS.nr.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
027
LACT_5CDS.CSA1
multi spec
Lactuca
spp.
---
perennis saligna sativa serriola virosa
assembly of the CDS regions only (EST fragments with homology to known plant genes)
-o 80 -p 90
92560
22870
13129
-1
-1
GB_ESTs_Feb_2007.x.Lact_5x_m.clean.CDS.nr.fasta
GB_ESTs_Feb_2007.x.Lact_5x_m.clean.CDS.nr.assembly
GB_ESTs_Feb_2007.x.Lact_5x_m.clean.CDS.nr.cap3.80.90.Info
GB_ESTs_Feb_2007.x.Lact_5x_m.clean.CDS.nr.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.x.Lact_5x_m.clean.CDS.nr.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
028
AST_11CDS.CSA1
multi spec
[Compositae]
---
---
11 Compositae species ('other' than Helianthus and Lactuca)
assembly of the CDS regions only (EST fragments with homology to known plant genes)
-o 80 -p 90
165394
71181
26769
-1
-1
GB_ESTs_Feb_2007.x.CGSTZ_11m.clean.CDS.nr.fasta
GB_ESTs_Feb_2007.x.CGSTZ_11m.clean.CDS.nr.assembly
GB_ESTs_Feb_2007.x.CGSTZ_11m.clean.CDS.nr.cap3.80.90.Info
GB_ESTs_Feb_2007.x.CGSTZ_11m.clean.CDS.nr.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.x.CGSTZ_11m.clean.CDS.nr.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
029
AST_12CDS.CSA1
multi spec
[Compositae]
---
---
Helianthus (7) and Lactuca (5) species; [12 different all together]
assembly of the CDS regions only (EST fragments with homology to known plant genes)
-o 80 -p 90
237306
66185
28238
-1
0.997
GB_ESTs_Feb_2007.x.7Heli_5Lact.clean.CDS.nr.fasta
GB_ESTs_Feb_2007.x.7Heli_5Lact.clean.CDS.nr.assembly
GB_ESTs_Feb_2007.x.7Heli_5Lact.clean.CDS.nr.cap3.80.90.Info
GB_ESTs_Feb_2007.x.7Heli_5Lact.clean.CDS.nr.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.x.7Heli_5Lact.clean.CDS.nr.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
030
LACT_2CDS.CSA1
two spec
Lactuca
---
---
sativa serriola
assembly of the CDS regions only (EST fragments with homology to known plant genes)
-o 80 -p 90
56443
17943
9520
-1
-1
GB_ESTs_Feb_2007.x.Lact_2x_m.clean.CDS.nr.fasta
GB_ESTs_Feb_2007.x.Lact_2x_m.clean.CDS.nr.assembly
GB_ESTs_Feb_2007.x.Lact_2x_m.clean.CDS.nr.cap3.80.90.Info
GB_ESTs_Feb_2007.x.Lact_2x_m.clean.CDS.nr.cap3.80.90.Align.tar.gz
GB_ESTs_Feb_2007.x.Lact_2x_m.clean.CDS.nr.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
031
LACT_2CDS.CST1
two spec
0
0
-1
-1
-1
032
LACT_5CDS.CST1
multi spec
Lactuca
spp.
---
five different genotypes; CDS region only; two rounds of CDS extraction
-o 100 -p 95
134008
31464
15630
-1
-1
GB_ESTs_Feb_2007.x.Lact_5x_m.clean.CDS.BXCZD.ALL.fasta
GB_ESTs_Feb_2007.x.Lact_5x_m.clean.CDS.BXCZD.100.95.assembly
GB_ESTs_Feb_2007.x.Lact_5x_m.clean.CDS.BXCZD.ALL.cap3.100.95.Info
033
LACT_PERE.CST1
mono spec
Lactuca
perennis
---
stringent CAP3 conditions; CDS regions only; two rounds of CDS extraction
-o 100 -p 95
17073
6763
2907
-1
-1
GB_ESTs_Feb_2007.x.Lact_pere.clean.CDS.BXCZD.ALL.fasta
GB_ESTs_Feb_2007.x.Lact_pere.clean.CDS.BXCZD.100.95.assembly
GB_ESTs_Feb_2007.x.Lact_pere.clean.CDS.BXCZD.ALL.cap3.100.95.Info
GB_ESTs_Feb_2007.x.Lact_pere.clean.CDS.BXCZD.100.95.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
034
LACT_SALI.CST1
mono spec
Lactuca
saligna
---
stringent CAP3 conditions; CDS regions only; two rounds of CDS extraction
-o 100 -p 95
19958
7253
3408
-1
-1
GB_ESTs_Feb_2007.x.Lact_sali.clean.CDS.BXCZD.ALL.fasta
GB_ESTs_Feb_2007.x.Lact_sali.clean.CDS.BXCZD.100.95.assembly
GB_ESTs_Feb_2007.x.Lact_sali.clean.CDS.BXCZD.ALL.cap3.100.95.Info
GB_ESTs_Feb_2007.x.Lact_sali.clean.CDS.BXCZD.100.95.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
035
LACT_SATI.CST1
mono spec
Lactuca
sativa
---
stringent CAP3 conditions; CDS regions only; two rounds of CDS extraction
-o 100 -p 95
46595
15785
7686
-1
-1
GB_ESTs_Feb_2007.x.Lact_sati.clean.CDS.BXCZD.ALL.fasta
GB_ESTs_Feb_2007.x.Lact_sati.clean.CDS.BXCZD.100.95.assembly
GB_ESTs_Feb_2007.x.Lact_sati.clean.CDS.BXCZD.ALL.cap3.100.95.Info
GB_ESTs_Feb_2007.x.Lact_sati.clean.CDS.BXCZD.100.95.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
036
LACT_SERR.CST1
mono spec
Lactuca
serriola
---
stringent CAP3 conditions; CDS regions only; two rounds of CDS extraction
-o 100 -p 95
32076
11746
4637
-1
-1
GB_ESTs_Feb_2007.x.Lact_serr.clean.CDS.BXCZD.ALL.fasta
GB_ESTs_Feb_2007.x.Lact_serr.clean.CDS.BXCZD.100.95.assembly
GB_ESTs_Feb_2007.x.Lact_serr.clean.CDS.BXCZD.ALL.cap3.100.95.Info
GB_ESTs_Feb_2007.x.Lact_serr.clean.CDS.BXCZD.100.95.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
037
LACT_VIRO.CST1
mono spec
Lactuca
virosa
---
stringent CAP3 conditions; CDS regions only; two rounds of CDS extraction
-o 100 -p 95
18306
6943
3168
-1
-1
GB_ESTs_Feb_2007.x.Lact_viro.clean.CDS.BXCZD.ALL.fasta
GB_ESTs_Feb_2007.x.Lact_viro.clean.CDS.BXCZD.100.95.assembly
GB_ESTs_Feb_2007.x.Lact_viro.clean.CDS.BXCZD.ALL.cap3.100.95.Info
GB_ESTs_Feb_2007.x.Lact_viro.clean.CDS.BXCZD.100.95.assembly.vs.A_thaliana_ATGC_2006_08_24.BlastX.info1
Contig Viewer