Compositae (Asteraceae) EST Assembly Info:

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ASSEMBLY_ID
CART_TINC.CSA1
CENT_MACU.CSA1
CENT_SOLS.CSA1
CICH_ENDI.CSA1
CICH_INTY.CSA1
GERB_HYBR.CSA1
SENE_05XM.CSA1
STEV_REBA.CSA1
TARA_KOK-.CSA1
TARA_OFFI.CSA1
ZINN_ELEG.CSA1
COMP_11XM.CSA1
AST_11CDS.CSA1
AST_12CDS.CSA1
LACT_2CDS.CST1
ASMBL_TYPE
mono spec
mono spec
mono spec
mono spec
mono spec
mono spec
multi spec
mono spec
mono spec
mono spec
mono spec
multi spec
multi spec
multi spec
two spec
SPECIESGENUS
Carthamus
Centaurea
Centaurea
Cichorium
Cichorium
Gerbera
Senecio
Stevia
Taraxacum
Taraxacum
Zinnia
[Compositae]
[Compositae]
[Compositae]
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EPITHET
tinctorius
maculosa
solstitialis
endivia
intybus
hybrid
spp.
rebaudiana
kok-saghyz
officinale
elegans
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COMM_NAME
Safflower
Spotted Knapweed
Yellow Starthistle
Endive
Chicory
Gerbera
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Stevia (sugarleaf)
Russian Dandelion
Dandelion
Zinnia
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INTER_SPEC
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aethnensis cambrensis chrysanthemifolius squalidus vulgaris
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all 'others' than Helianthus and Lactuca
11 Compositae species ('other' than Helianthus and Lactuca)
Helianthus (7) and Lactuca (5) species; [12 different all together]
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COMMENTS
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cultivars: Terra Nero and Terra Regina
EST sequences from five Senecio species
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assembly of the assemblies of 11 Compositae species ('other' than Helianthus and Lactuca)
assembly of the CDS regions only (EST fragments with homology to known plant genes)
assembly of the CDS regions only (EST fragments with homology to known plant genes)
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CAP3_PARAM
-o 80 -p 90
-o 80 -p 90
-o 80 -p 90
-o 80 -p 90
-o 80 -p 90
-o 80 -p 90
-o 80 -p 90
-o 80 -p 90
-o 80 -p 90
-o 80 -p 90
-o 80 -p 90
-o 80 -p 90
-o 80 -p 90
-o 80 -p 90
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N_SEQS/ESTs
40874
39957
40406
30170
41704
16848
9797
5452
4702
41278
17937
155566
165394
237306
0
N_UNIGENES
19395
20922
22917
18951
22038
8665
5558
3345
3363
15761
14651
137365
71181
66185
0
N_CONTIGS
7154
7122
7158
5295
7575
2523
1526
709
811
6350
2483
45466
26769
28238
-1
ATH_HITS%
78.6
79.3
77.6
76.7
75.8
64
-1
-1
-1
-1
-1
-1
-1
-1
-1
UCO_FRACT
0.8
0.8
0.79
0.7
0.77
0.33
0.29
0.19
0.2
0.56
0.52
0.99
-1
0.997
-1
SEQs_FILE
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ASSEMBLY_FILE
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CONTIG_INFO
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CAP3_ALIGNMENTS
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ATH_BLAST_INFO_BEST_HIT
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