Compositae (Asteraceae) EST Assembly Info:

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ASSEMBLY_ID
LACT_PERE.CSA1
LACT_SALI.CSA1
LACT_SATI.CSA1
LACT_SERR.CSA1
LACT_VIRO.CSA1
LACT_05XM.CSA1
LACT_5CDS.CSA1
LACT_2CDS.CSA1
LACT_5CDS.CST1
LACT_PERE.CST1
LACT_SALI.CST1
LACT_SATI.CST1
LACT_SERR.CST1
LACT_VIRO.CST1
ASMBL_TYPE
mono spec
mono spec
mono spec
mono spec
mono spec
multi spec
multi spec
two spec
multi spec
mono spec
mono spec
mono spec
mono spec
mono spec
SPECIESGENUS
Lactuca
Lactuca
Lactuca
Lactuca
Lactuca
Lactuca
Lactuca
Lactuca
Lactuca
Lactuca
Lactuca
Lactuca
Lactuca
Lactuca
EPITHET
perennis
saligna
sativa
serriola
virosa
spp.
spp.
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spp.
perennis
saligna
sativa
serriola
virosa
COMM_NAME
Blue Lettuce
Willowleaf Lettuce
Garden Lettuce
Prickly Lettuce
Bitter Lettuce
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INTER_SPEC
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perennis saligna sativa serriola virosa
perennis saligna sativa serriola virosa
sativa serriola
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COMMENTS
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assembly of the assemblies of 5 Lactuca species
assembly of the CDS regions only (EST fragments with homology to known plant genes)
assembly of the CDS regions only (EST fragments with homology to known plant genes)
five different genotypes; CDS region only; two rounds of CDS extraction
stringent CAP3 conditions; CDS regions only; two rounds of CDS extraction
stringent CAP3 conditions; CDS regions only; two rounds of CDS extraction
stringent CAP3 conditions; CDS regions only; two rounds of CDS extraction
stringent CAP3 conditions; CDS regions only; two rounds of CDS extraction
stringent CAP3 conditions; CDS regions only; two rounds of CDS extraction
CAP3_PARAM
-o 80 -p 90
-o 80 -p 90
-o 80 -p 90
-o 80 -p 90
-o 80 -p 90
-o 80 -p 90
-o 80 -p 90
-o 80 -p 90
-o 100 -p 95
-o 100 -p 95
-o 100 -p 95
-o 100 -p 95
-o 100 -p 95
-o 100 -p 95
N_SEQS/ESTs
29118
30689
80735
55452
30056
81425
92560
56443
134008
17073
19958
46595
32076
18306
N_UNIGENES
11472
11491
26720
19877
11865
50433
22870
17943
31464
6763
7253
15785
11746
6943
N_CONTIGS
4778
5172
11625
7653
5129
23240
13129
9520
15630
2907
3408
7686
4637
3168
ATH_HITS%
-1
-1
-1
-1
-1
-1
-1
-1
-1
-1
-1
-1
-1
-1
UCO_FRACT
0.5
0.55
0.82
0.67
0.48
0.95
-1
-1
-1
-1
-1
-1
-1
-1
SEQs_FILE
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ASSEMBLY_FILE
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CONTIG_INFO
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CAP3_ALIGNMENTS
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ATH_BLAST_INFO_BEST_HIT
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