Lettuce Genetic Map Salinas X Serriola RILs March 2007

Raw Data

All selected markers and RILs

ril_data_2007_03_08.x.all.loc - locus file with all available markers and RILs

ril_data_2007_03_08.x.sel.loc - locus file with selected markers and RILs
Suspended_Markers_Table_2007_03_06_LKM.tab [ derivative: List_of_Markers_to_include_2007_03_06_AKM.tab ]
Suspended_RILs_Table_2007_03_08_MJT.tab [ derivative: List_of_RILs_to_work_with_2007_03_06_MJT.tab ]


ril_data_2007_03_08.x.sel.madmap.R1b.x_log_file - MadMapper clustering parameters

LM_DEC2006_R_MLmap_Distance.tab - framework set from previous version of the map December 2006

ril_data_2007_03_08.x.sel.madmap.R1b.z_marker_sum - selection for "good" and non-redundant markers

ril_data_2007_03_08.x.sel.madmap.R1b.x_tree_clust - clustering results (grouping)
ril_data_2007_03_08.x.sel.madmap.R1b.group_info_Summary - group info summary

ril_data_2007_03_08.x.sel.madmap.R1b.pairs_all - pairwise distances for selected markers and RILs


Clean non-redundant selected markers and RILs

ril_data_2007_03_08.x.clean.loc - clean non-redundant locus file for clustering

ril_data_2007_03_08.x.clean.madmap.R2b.x_log_file - MadMapper clustering parameters

ril_data_2007_03_08.x.clean.madmap.R2b.z_marker_sum - marker summary file (data loss and triplet analysis)

ril_data_2007_03_08.x.clean.madmap.R2b.x_tree_clust - clustering results (grouping)
ril_data_2007_03_08.x.clean.madmap.R2b.group_info_Summary - group info summary ("clean" non-redundant markers)

ril_data_2007_03_08.x.clean.madmap.R2b.pairs_all - Matrix - pairwise distances for "clean" non-redundant markers