CGP EST Assembly Info:

### ASSEMBLY PARAM SPECIES GENOTYPE LIBRARY #_of_ESTs CONTIGS SINGLETS UNIGENES GROUPS EST/UNI UNI/GRP LENGTH ATH_HITS% COMMENTS DOWNLOAD_ESTs DOWNLOAD_ASSEMBLY DOWNLOAD_CLUST_INFO DOWNLOAD_GROUP_INFO ATH_BLAST_INFO_BEST_HIT GO STAT
000 L0_CDS_Contig# 80-90 lettuce L.sativa L.serriola QG(ABCDI) QG(EFGHJ) CLS(XYZ) CLR(XYZ) 49376 8006 9559 17565 15209 2.81 1.15 565 95.34 assembly of CDS regions only L0_CDS_ESTs_Sat_Ser.fasta L0_CDS_ESTs_Sat_Ser.assembly L0_CDS_ESTs_Sat_Ser.cluster L0_CDS_ESTs_Sat_Ser.group L0_CDS_ESTs_Sat_Ser.BlastX.vs.ath_ncbi_v4a_prot.info1 L0_CDS_ESTs_Sat_Ser
001 L1_CDS_Contig# 80-90 lettuce L.sativa L.serriola L.saligna L.perennis L.virosa QG(ABCDI) QG(EFGHJ) CLS(XYZ) CLR(XYZ) CLL(XYZ) CLP(XYZ) CLV(XYZ) 89773 12795 12000 24795 19270 3.62 1.29 587 94.84 assembly of CDS regions only L1_CDS_ESTs_5XLet.fasta L1_CDS_ESTs_5XLet.assembly L1_CDS_ESTs_5XLet.cluster L1_CDS_ESTs_5XLet.group L1_CDS_ESTs_5XLet.BlastX.vs.ath_ncbi_v4a_prot.info1 L1_CDS_ESTs_5XLet
002 L2_CDS_Contig# 80-90 lettuce L.sativa L.serriola L.saligna L.perennis L.virosa QG(ABCDI) QG(EFGHJ) CLS(XYZ) CLS(LMS) CLR(XYZ) CLL(XYZ) CLP(XYZ) CLV(XYZ) 102697 14221 11388 25609 19408 4.01 1.32 636 98.02 assembly of CDS regions only L2_CDS_ESTs_5XLet.fasta L2_CDS_ESTs_5XLet.assembly L2_CDS_ESTs_5XLet.cluster L2_CDS_ESTs_5XLet.group L2_CDS_ESTs_5XLet.BlastX.vs.ath_ncbi_v4a_prot.info1 L2_CDS_ESTs_5XLet
003 CLS_M1_Contig# 80-90 lettuce L.sativa QG(ABCDI) CLS(XYZ) 50156 7358 11397 18755 15310 2.67 1.23 683 72.11 standard library only CLS_M1_ESTs_Sat.fasta CLS_M1_ESTs_Sat.assembly CLS_M1_ESTs_Sat.cluster CLS_M1_ESTs_Sat.group CLS_M1_ESTs_Sat.BlastX.vs.ath_ncbi_v4a_prot.info1 CLS_M1_ESTs_Sat
004 CLR_M1_Contig# 80-90 lettuce L.serriola QG(EFGHJ) CLR(XYZ) 52034 7544 12509 20053 16453 2.59 1.22 701 73.26 ---- CLR_M1_ESTs_Ser.fasta CLR_M1_ESTs_Ser.assembly CLR_M1_ESTs_Ser.cluster CLR_M1_ESTs_Ser.group CLR_M1_ESTs_Ser.BlastX.vs.ath_ncbi_v4a_prot.info1 CLR_M1_ESTs_Ser
005 CLL_M1_Contig# 80-90 lettuce L.saligna CLL(XYZ) 28851 5053 6475 11528 9510 2.5 1.21 772 80.79 ---- CLL_M1_ESTs_Sal.fasta CLL_M1_ESTs_Sal.assembly CLL_M1_ESTs_Sal.cluster CLL_M1_ESTs_Sal.group CLL_M1_ESTs_Sal.BlastX.vs.ath_ncbi_v4a_prot.info1 CLL_M1_ESTs_Sal
006 CLP_M1_Contig# 80-90 lettuce L.perennis CLP(XYZ) 28066 4751 7102 11853 9396 2.37 1.26 753 76.59 ---- CLP_M1_ESTs_Per.fasta CLP_M1_ESTs_Per.assembly CLP_M1_ESTs_Per.cluster CLP_M1_ESTs_Per.group CLP_M1_ESTs_Per.BlastX.vs.ath_ncbi_v4a_prot.info1 CLP_M1_ESTs_Per
007 CLV_M1_Contig# 80-90 lettuce L.virosa CLV(XYZ) 28335 4977 7209 12186 9859 2.33 1.24 744 74.66 ---- CLV_M1_ESTs_Vir.fasta CLV_M1_ESTs_Vir.assembly CLV_M1_ESTs_Vir.cluster CLV_M1_ESTs_Vir.group CLV_M1_ESTs_Vir.BlastX.vs.ath_ncbi_v4a_prot.info1 CLV_M1_ESTs_Vir
008 CLX_M1_Contig# 80-90 lettuce L.sativa L.serriola L.saligna L.perennis L.virosa CLS_M1 CLR_M1 CLL_M1 CLP_M1 CLV_M1 74375 10803 49450 60253 30059 1.23 2.01 764 73.42 assembly of the assemblies CLX_M1_ESTs_5XL.fasta CLX_M1_ESTs_5XL.assembly CLX_M1_ESTs_5XL.cluster CLX_M1_ESTs_5XL.group CLX_M1_ESTs_5XL.BlastX.vs.ath_ncbi_v4a_prot.info1 CLX_M1_ESTs_5XL
009 CTO_M1_Contig# 80-90 dandelion Taraxacum officinale CTO(XYZ) 39588 6498 10169 16667 12361 2.38 1.34 739 H/N ---- CTO_M1_ESTs_Dan.fasta CTO_M1_ESTs_Dan.assembly CTO_M1_ESTs_Dan.cluster CTO_M1_ESTs_Dan.group CTO_M1_ESTs_Dan.BlastX.vs.ath_ncbi_v4a_prot.info1 CTO_M1_ESTs_Dan
010 CHA_M2_Contig# 80-90 sunflower Helianthus annuus QH(ABCDI) QH(EFGHJ) CHA(XYZ) NCBI_ESTs 86398 11053 21654 32707 22418 2.64 1.46 583 H/N assembly represented by several different strains CHA_M2_ESTs_Ann.fasta CHA_M2_ESTs_Ann.assembly CHA_M2_ESTs_Ann.cluster CHA_M2_ESTs_Ann.group CHA_M2_ESTs_Ann.BlastX.vs.ath_ncbi_v4a_prot.info1 CHA_M2_ESTs_Ann
011 CHP_M1_Contig# 80-90 sunflower Helianthus petiolaris CHP(XYZ) 26808 4555 9719 14274 10504 1.88 1.36 727 H/N ---- CHP_M1_ESTs_Pet.fasta CHP_M1_ESTs_Pet.assembly CHP_M1_ESTs_Pet.cluster CHP_M1_ESTs_Pet.group CHP_M1_ESTs_Pet.BlastX.vs.ath_ncbi_v4a_prot.info1 CHP_M1_ESTs_Pet
012 CHT_M1_Contig# 80-90 J.artichoke Helianthus tuberosus CHT(LMS) 19139 2926 11863 14789 10637 1.29 1.39 830 H/N non-complete set of ESTs (see assembly #013) CHT_M1_ESTs_Tub.fasta CHT_M1_ESTs_Tub.assembly CHT_M1_ESTs_Tub.cluster CHT_M1_ESTs_Tub.group CHT_M1_ESTs_Tub.BlastX.vs.ath_ncbi_v4a_prot.info1 CHT_M1_ESTs_Tub
013 CHT_M2_Contig# 80-90 J.artichoke Helianthus tuberosus CHT(LMS) 0 0 0 0 -1 -1 -1 0 H/N complete set (in progress)
014a CLS_S3_Contig# 100-95 lettuce Lactuca sativa QG(ABCDI) CLS(XYZ) CLS(LMS) 76043 11455 17962 29417 22657 2.56 1.3 740 NA stringent cap3 conditions CLS_S3_ESTs_Sat.fasta CLS_S3_ESTs_Sat.assembly CLS_S3_ESTs_Sat.cluster CLS_S3_ESTs_Sat.group CLS_S3_ESTs_Sat.BlastX.vs.ath_ncbi_v4a_prot.info1 CLS_S3_ESTs_Sat
014b CLS_M3_Contig# 80-90 lettuce Lactuca sativa QG(ABCDI) CLS(XYZ) CLS(LMS) 76043 11567 15481 27048 -1 2.81 -1 0 H/N medium cap3 conditions CLS_M3_ESTs_Sat.fasta CLS_M3_ESTs_Sat.assembly CLS_M3_ESTs_Sat.cluster CLS_M3_ESTs_Sat.BlastX.vs.ath_ncbi_v4a_prot.info1 CLS_M3_ESTs_Sat
015 CLR_S1_Contig# 100-95 lettuce Lactuca serriola QG(EFGHJ) CLR(XYZ) 52034 7355 14972 22327 16643 2.33 1.34 0 H/N stringent cap3 conditions CLR_S1_ESTs_Ser.fasta CLR_S1_ESTs_Ser.assembly CLR_S1_ESTs_Ser.cluster CLR_S1_ESTs_Ser.group CLR_S1_ESTs_Ser.BlastX.vs.ath_ncbi_v4a_prot.info1 CLR_S1_ESTs_Ser
016 CLL_S1_Contig# 100-95 lettuce Lactuca saligna CLL(XYZ) 28851 4977 7013 11990 9536 2.41 1.26 0 80.63 stringent cap3 conditions CLL_S1_ESTs_Sal.fasta CLL_S1_ESTs_Sal.assembly CLL_S1_ESTs_Sal.cluster CLL_S1_ESTs_Sal.group CLL_S1_ESTs_Sal.BlastX.vs.ath_ncbi_v4a_prot.info1 CLL_S1_ESTs_Sal
017 CLP_S1_Contig# 100-95 lettuce Lactuca perennis CLP(XYZ) 28066 4601 8060 12661 9435 2.22 1.34 0 76.29 stringent cap3 conditions CLP_S1_ESTs_Per.fasta CLP_S1_ESTs_Per.assembly CLP_S1_ESTs_Per.cluster CLP_S1_ESTs_Per.group CLP_S1_ESTs_Per.BlastX.vs.ath_ncbi_v4a_prot.info1 CLP_S1_ESTs_Per
018 CLV_S1_Contig# 100-95 lettuce Lactuca virosa CLV(XYZ) 28335 4903 7830 12733 9913 2.23 1.28 0 74.26 stringent cap3 conditions CLV_S1_ESTs_Vir.fasta CLV_S1_ESTs_Vir.assembly CLV_S1_ESTs_Vir.cluster CLV_S1_ESTs_Vir.group CLV_S1_ESTs_Vir.BlastX.vs.ath_ncbi_v4a_prot.info1 CLV_S1_ESTs_Vir
019 CLX_S3_Contig# 100-95 lettuce L.sativa L.serriola QG(ABCDI) CLS(XYZ) CLS(LMS) QG(EFGHJ) CLR(XYZ) CLS_S3_Contig# 128077 16212 26343 42555 -1 -1 -1 0 H/N cap3 stringent conditions: custom assembly of two genotypes [sativa & serriola] for SNP discovery CLX_S3_ESTs_2XL.fasta CLX_S3_ESTs_2XL.assembly CLX_S3_ESTs_2XL.cluster CLX_S3_ESTs_2XL.BlastX.vs.ath_ncbi_v4a_prot.info1 CLX_S3_ESTs_2XL
020 CLX_S5_Contig# 100-95 lettuce L.sativa L.serriola L.saligna L.perennis L.virosa CLS_S3 CLR_S1 CLL_S1 CLP_S1 CLV_S1 0 0 0 0 -1 -1 -1 0 H/N assembly of the assemblies [stringent conditions]
021 CHW_M1_Contig# 80-90 sunflower Helianthus argophyllus CHW(LMS) 0 0 0 0 -1 -1 -1 0 H/N ----
022 CHE_M1_Contig# 80-90 sunflower Helianthus exilis CHE(LMS) 0 0 0 0 -1 -1 -1 0 H/N ----
023 CCI_M1_Contig# 80-90 chicory Cichorium intybus CCI(LMS) 38237 7115 15173 22288 -1 1.72 -1 790 H/N medium cap3 conditions CCI_M1_ESTs_Int.fasta CCI_M1_ESTs_Int.assembly CCI_M1_ESTs_Int.cluster CCI_M1_ESTs_Int.BlastX.vs.ath_ncbi_v4a_prot.info1 CCI_M1_ESTs_Int



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