XLS3_Contig1 AT4G15060 F-box protein-related, contains weak similarity to F-box domain Pfam:PF00646 [ 22328640 NP_193242.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8599031 CHROM_POS_END:8601757 } -=| MIDDLE_POINT:8600394 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.14 28 70 250 1 1137 572 XLS3_Contig2 AT5G51830 pfkB-type carbohydrate kinase family protein, contains Pfam profile: PF00294 pfkB family carbohydrate kinase [ 15242193 NP_199996.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21086935 CHROM_POS_END:21088676 } -=| MIDDLE_POINT:21087805 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.86 79 116 146 1 894 343 XLS3_Contig3 AT4G03110 RNA-binding protein, putative, similar to Etr-1 (Danio rerio) GI:7670536, BRUNO-like 6 RNA-binding protein (Homo sapiens) GI:15341327, CUG-BP and ETR-3 like factor 3 (Homo sapiens) GI:12746392 [ 18412143 NP_567249.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1376612 CHROM_POS_END:1379275 } -=| MIDDLE_POINT:1377943 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 200 301 1 910 441 XLS3_Contig4 AT2G45790 eukaryotic phosphomannomutase family protein, contains Pfam profile: PF03332 eukaryotic phosphomannomutase [ 15225896 NP_182103.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18862950 CHROM_POS_END:18864827 } -=| MIDDLE_POINT:18863888 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 167 209 1 922 246 XLS3_Contig5 AT1G62390 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein, contains Pfam profiles PF00564: PB1 domain, PF00515: TPR Domain [ 18407574 NP_564794.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:23088297 CHROM_POS_END:23090552 } -=| MIDDLE_POINT:23089424 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.76 67 146 215 1 825 751 XLS3_Contig6 AT2G14120 dynamin-like protein 2b (ADL2b), identical to dynamin like protein 2b (ADL2b) (Arabidopsis thaliana) GI:19032339 [ 42569021 NP_565363.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:5961335 CHROM_POS_END:5967097 } -=| MIDDLE_POINT:5964216 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 209 252 1 890 780 XLS3_Contig7 AT3G50530 calcium-dependent protein kinase, putative / CDPK, putative, similar to calcium/calmodulin-dependent protein kinase CaMK3 (Nicotiana tabacum) gi|16904226|gb|AAL30820 [ 15229785 NP_190622.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18764814 CHROM_POS_END:18767468 } -=| MIDDLE_POINT:18766141 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.64 64 128 197 1 857 601 XLS3_Contig8 AT4G37450 arabinogalactan-protein (AGP18), identical to gi_11935088_gb_AAG41964 [ 18420042 NP_568027.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17605920 CHROM_POS_END:17606728 } -=| MIDDLE_POINT:17606324 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.42 50 107 210 1 772 209 XLS3_Contig9 AT3G54420 class IV chitinase (CHIV), almost identical to class IV chitinase from GI:2597826 (Arabidopsis thaliana) [ 15232509 NP_191010.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20156913 CHROM_POS_END:20158012 } -=| MIDDLE_POINT:20157462 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 190 270 1 929 273 XLS3_Contig10 AT5G54190 protochlorophyllide reductase A, chloroplast / PCR A / NADPH-protochlorophyllide oxidoreductase A (PORA), identical to SP:Q42536 protochlorophyllide reductase A, chloroplast precursor (EC 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) (Arabidopsis thaliana) [ 15239574 NP_200230.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:22008409 CHROM_POS_END:22009999 } -=| MIDDLE_POINT:22009204 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 191 274 1 878 405 XLS3_Contig11 AT2G35410 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative, similar to SP|P19684 33 kDa ribonucleoprotein, chloroplast precursor {Nicotiana sylvestris} [ 15226983 NP_181084.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:14905420 CHROM_POS_END:14906669 } -=| MIDDLE_POINT:14906044 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.6 47 133 280 1 944 308 XLS3_Contig12 AT3G19860 similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:At4g36060.1) [ 79313299 NP_001030729.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:6903848 CHROM_POS_END:6905869 } -=| MIDDLE_POINT:6904858 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.52 51 112 219 1 962 337 XLS3_Contig13 AT4G16490 armadillo/beta-catenin repeat family protein, contains Pfam profile: PF00514 armadillo/beta-catenin-like repeat [ 18414673 NP_567501.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9294747 CHROM_POS_END:9295553 } -=| MIDDLE_POINT:9295150 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.74 60 156 259 1 940 268 XLS3_Contig14 AT4G24280 heat shock protein 70, putative / HSP70, putative, strong similarity to heat shock protein 70 (Arabidopsis thaliana) GI:6746592 [ 15233779 NP_194159.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12590104 CHROM_POS_END:12593447 } -=| MIDDLE_POINT:12591775 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 84 467 553 1 1663 718 XLS3_Contig15 AT2G19860 hexokinase 2 (HXK2), identical to hexokinase 2 (Arabidopsis thaliana) Swiss-Prot:P93834 [ 15224857 NP_179576.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8577900 CHROM_POS_END:8580844 } -=| MIDDLE_POINT:8579372 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.89 72 164 225 1 964 502 XLS3_Contig16 AT3G16480 mitochondrial processing peptidase alpha subunit, putative, similar to mitochondrial processing peptidase alpha subunit, mitochondrial precursor, Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II) (Potato) SWISS-PROT:P29677 [ 18401141 NP_566548.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5599912 CHROM_POS_END:5602722 } -=| MIDDLE_POINT:5601317 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 296 453 1 1516 499 XLS3_Contig17 AT5G48560 basic helix-loop-helix (bHLH) family protein, contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain [ 15239013 NP_199667.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19701386 CHROM_POS_END:19704097 } -=| MIDDLE_POINT:19702741 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.65 46 169 360 1 1417 498 XLS3_Contig18 AT1G24260 MADS-box protein (AGL9), strongly similar to GB:O22456, MADS-box protein, Location of EST gb|H37053 [ 22329771 NP_564214.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:8593779 CHROM_POS_END:8595851 } -=| MIDDLE_POINT:8594815 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.73 59 145 244 1 843 251 XLS3_Contig19 AT3G27570 expressed protein [ AT3G27570 30688845 NP_566821.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:10215513 CHROM_POS_END:10217918 } -=| MIDDLE_POINT:10216715 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 54 186 339 1 1444 379 XLS3_Contig20 AT3G14310 pectinesterase family protein, contains Pfam profiles: PF01095 pectinesterase, PF04043 plant invertase/pectin methylesterase inhibitor [ 15231828 NP_188048.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4772221 CHROM_POS_END:4775102 } -=| MIDDLE_POINT:4773661 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.98 72 166 230 1 880 592 XLS3_Contig21 AT2G47240 long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein, similar to GI:1617270 (MF7P) and gi:1617628 (MF45P) from (Brassica napus) [ 15226536 NP_182246.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:19400905 CHROM_POS_END:19404686 } -=| MIDDLE_POINT:19402795 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 63 310 490 1 1906 660 XLS3_Contig22 no_hits_found 0 0 XLS3_Contig23 AT5G22070 expressed protein, contains Pfam profile PF03267: Arabidopsis protein of unknown function, DUF266 [ 30688302 NP_680193.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7308258 CHROM_POS_END:7309346 } -=| MIDDLE_POINT:7308802 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.59 58 72 124 1 886 362 XLS3_Contig24 AT5G66060 oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to prolyl 4-hydroxylase, alpha subunit, from Rattus norvegicus (GI:474940), Mus musculus (SP|Q60715), Homo sapiens (GI:18073925) [ 15239240 NP_201407.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:26436707 CHROM_POS_END:26438156 } -=| MIDDLE_POINT:26437431 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.96 79 106 133 1 870 267 XLS3_Contig25 AT3G48700 expressed protein, similar to PrMC3 (Pinus radiata) GI:5487873 [ 15228426 NP_190439.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18049810 CHROM_POS_END:18050799 } -=| MIDDLE_POINT:18050304 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.69 47 137 286 1 911 329 XLS3_Contig26 AT3G05270 expressed protein, similar to endosome-associated protein (EEA1) (GI:1016368) (Homo sapiens) [ 30679450 NP_187178.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1500809 CHROM_POS_END:1502932 } -=| MIDDLE_POINT:1501870 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.81 51 180 351 1 1502 615 XLS3_Contig27 AT3G16200 expressed protein [ AT3G16200 79403686 NP_188241.4 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5491625 CHROM_POS_END:5493611 } -=| MIDDLE_POINT:5492618 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.92 79 119 149 1 853 456 XLS3_Contig28 AT5G57700 BNR/Asp-box repeat family protein, contains Pfam PF02012: BNR/Asp-box repeat [ 30696915 NP_851204.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:23392501 CHROM_POS_END:23394169 } -=| MIDDLE_POINT:23393335 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.71 77 113 145 1 628 352 XLS3_Contig29 AT1G63430 leucine-rich repeat transmembrane protein kinase, putative, contains Pfam profiles: PF00069 Eukaryotic protein kinase domain, PF00560 Leucine Rich Repeat [ 30696848 NP_176532.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:23526561 CHROM_POS_END:23530116 } -=| MIDDLE_POINT:23528338 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 54 190 350 1 1556 664 XLS3_Contig30 no_hits_found 0 0 XLS3_Contig31 AT3G49470 nascent polypeptide-associated complex (NAC) domain-containing protein, similar to alpha-NAC, non-muscle form (Mus musculus) GI:1666690 [ 15229149 NP_190516.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18352057 CHROM_POS_END:18353258 } -=| MIDDLE_POINT:18352657 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.74 72 141 195 1 813 217 XLS3_Contig32 AT3G46010 actin-depolymerizing factor 1 (ADF1), identical to SP|Q39250 Actin-depolymerizing factor 1 (ADF-1) (AtADF1) {Arabidopsis thaliana} [ 15231309 NP_190187.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16920664 CHROM_POS_END:16921663 } -=| MIDDLE_POINT:16921163 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.65 82 114 139 1 721 139 XLS3_Contig33 no_hits_found 0 0 XLS3_Contig34 AT1G72370 40S ribosomal protein SA (RPSaA), identical to laminin receptor-like protein GB:U01955 (Arabidopsis thaliana) [ 15218458 NP_177381.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:27246810 CHROM_POS_END:27248504 } -=| MIDDLE_POINT:27247657 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 208 259 1 873 298 XLS3_Contig35 AT1G17180 glutathione S-transferase, putative, Second of three repeated putative glutathione transferases. 72% identical to glutathione transferase (Arabidopsis thaliana) (gi|4006934). Location of ests 191A10T7 (gb|R90188) and 171N13T7 (gb|R65532) [ 15220041 NP_173161.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5872201 CHROM_POS_END:5872951 } -=| MIDDLE_POINT:5872576 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.84 64 141 218 1 859 221 XLS3_Contig36 AT1G59580 mitogen-activated protein kinase, putative / MAPK, putative (MPK2), identical to mitogen-activated protein kinase homolog 2 (AtMPK2)(Arabidopsis thaliana) SWISS-PROT:Q39022 [ 18406388 NP_564746.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21888186 CHROM_POS_END:21889408 } -=| MIDDLE_POINT:21888797 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.79 86 138 160 1 984 376 XLS3_Contig37 no_hits_found 0 0 XLS3_Contig38 AT2G45640 sin3 associated polypeptide p18 family protein, similar to Sin3 associated polypeptide p18 (2HOR0202) (Swiss-Prot:O00422) (Homo sapiens) [ 18406846 NP_566050.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18806955 CHROM_POS_END:18808397 } -=| MIDDLE_POINT:18807676 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.53 67 103 152 1 815 152 XLS3_Contig39 AT4G02730 transducin family protein / WD-40 repeat family protein, similar to C. elegans putative WD-repeat protein C14B1.4 (SP:Q17963) [ 15235470 NP_192182.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1207759 CHROM_POS_END:1209066 } -=| MIDDLE_POINT:1208412 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 216 296 1 921 333 XLS3_Contig40 AT5G64940 ABC1 family protein, contains Pfam domain, PF03109: ABC1 family [ 30698079 NP_851271.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:25966342 CHROM_POS_END:25970552 } -=| MIDDLE_POINT:25968447 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 281 336 1 1032 761 XLS3_Contig41 AT4G32420 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, weak similarity to CARS-Cyp (Homo sapiens) GI:1117968 [ 22329097 NP_194968.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15647556 CHROM_POS_END:15652109 } -=| MIDDLE_POINT:15649832 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.68 60 130 215 1 778 837 XLS3_Contig42 AT1G32440 pyruvate kinase, putative, similar to pyruvate kinase isozyme G, chloroplast precursor (Nicotiana tabacum) SWISS-PROT:Q40546 [ 18398434 NP_564402.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11712185 CHROM_POS_END:11714943 } -=| MIDDLE_POINT:11713564 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 222 261 1 1222 571 XLS3_Contig43 AT3G17170 ribosomal protein S6 family protein (RFC3), annotation temporarily based on supporting cDNA gi|15620809|dbj|AB057424.1| [ 18401405 NP_566568.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5853192 CHROM_POS_END:5854859 } -=| MIDDLE_POINT:5854025 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.79 61 143 232 1 869 314 XLS3_Contig44 AT2G39340 SAC3/GANP family protein, contains Pfam profile: PF03399 SAC3/GANP family [ 42569765 NP_181466.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16431121 CHROM_POS_END:16436849 } -=| MIDDLE_POINT:16433985 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.21 34 79 231 1 1012 1006 XLS3_Contig45 no_hits_found 0 0 XLS3_Contig46 AT3G12120 omega-6 fatty acid desaturase, endoplasmic reticulum (FAD2) / delta-12 desaturase, identical to omega-6 fatty acid desaturase, endoplasmic reticulum (FAD2) SP:P46313 (Arabidopsis thaliana (Mouse-ear cress)) (Plant Cell 6:147-158(1994)) [ 15229956 NP_187819.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3860598 CHROM_POS_END:3861749 } -=| MIDDLE_POINT:3861173 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 191 276 1 909 383 XLS3_Contig47 AT2G39770 GDP-mannose pyrophosphorylase (GMP1), identical to GDP-mannose pyrophosphorylase from Arabidopsis thaliana (GI:3598958) [ 15225553 NP_181507.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16596479 CHROM_POS_END:16597819 } -=| MIDDLE_POINT:16597149 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 89 244 273 1 886 361 XLS3_Contig48 AT5G67300 myb family transcription factor, contains PFAM profile: myb DNA binding domain PF00249 [ 15240708 NP_201531.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:26871335 CHROM_POS_END:26872252 } -=| MIDDLE_POINT:26871793 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.73 65 140 215 1 1004 305 XLS3_Contig49 AT1G60160 potassium transporter family protein, similar to potassium transporter HAK2p (Mesembryanthemum crystallinum) gi|14091471|gb|AAK53759 [ 42562825 NP_176222.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:22191995 CHROM_POS_END:22195060 } -=| MIDDLE_POINT:22193527 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.98 73 188 255 1 1158 827 XLS3_Contig50 AT1G69220 serine/threonine protein kinase, putative, identical to serine/threonine kinase (Arabidopsis thaliana) gi|2352084|gb|AAB68776 [ 18409220 NP_564955.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:26023961 CHROM_POS_END:26029782 } -=| MIDDLE_POINT:26026871 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.69 50 162 318 1 884 836 XLS3_Contig51 AT5G02490 heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2), identical to SP|P22954 Heat shock cognate 70 kDa protein 2 (Hsc70.2) {Arabidopsis thaliana} [ 15241847 NP_195869.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:550294 CHROM_POS_END:552563 } -=| MIDDLE_POINT:551428 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 195 284 1 939 653 XLS3_Contig52 AT1G32450 proton-dependent oligopeptide transport (POT) family protein, contains Pfam profile: PF00854 POT family [ 30692706 NP_174523.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11715317 CHROM_POS_END:11719787 } -=| MIDDLE_POINT:11717552 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 53 193 364 1 1196 614 XLS3_Contig53 AT1G15520 ABC transporter family protein, similar to ABC1 protein GI:14331118 from (Nicotiana plumbaginifolia) [ 15218218 NP_173005.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5331988 CHROM_POS_END:5338170 } -=| MIDDLE_POINT:5335079 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 384 490 1 1472 1423 XLS3_Contig54 AT2G42310 expressed protein [ AT2G42310 15227917 NP_181760.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17632329 CHROM_POS_END:17632673 } -=| MIDDLE_POINT:17632501 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.39 65 77 118 1 701 114 XLS3_Contig55 AT1G01360 expressed protein, similar to hypothetical protein GB:CAB45785 GI:5262156 from (Arabidopsis thaliana) [ 18378830 NP_563626.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:142138 CHROM_POS_END:142914 } -=| MIDDLE_POINT:142526 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.75 76 130 170 1 880 187 XLS3_Contig56 AT5G18420 expressed protein, non-consensus GC donor splice site at exon 1, unknown (C40) protein, Homo sapiens, EMBL:AF103798 [ 30686822 NP_850845.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:6105640 CHROM_POS_END:6109339 } -=| MIDDLE_POINT:6107489 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.36 34 87 250 1 876 442 XLS3_Contig57 AT4G27990 YGGT family protein, contains Pfam profile PF02325: YGGT family (unknown function) [ 15234345 NP_194528.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13923997 CHROM_POS_END:13924653 } -=| MIDDLE_POINT:13924325 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.57 56 129 228 1 897 218 XLS3_Contig58 AT3G20290 calcium-binding EF hand family protein, similar to EH-domain containing protein 1 from {Mus musculus} SP|Q9WVK4 and {Homo sapiens} SP|Q9H4M9, receptor-mediated endocytosis 1 from (Caenorhabditis elegans) GI:13487775, GI:13487777, GI:13487779 [ 18402561 NP_566657.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7075063 CHROM_POS_END:7078661 } -=| MIDDLE_POINT:7076862 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 192 264 1 980 545 XLS3_Contig59 AT1G18070 EF-1-alpha-related GTP-binding protein, putative, similar to EF-1-alpha-related GTP-binding protein gi|1009232|gb|AAA79032 [ 15220940 NP_173247.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:6214229 CHROM_POS_END:6218204 } -=| MIDDLE_POINT:6216216 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 389 525 1 2039 532 XLS3_Contig60 AT2G43630 expressed protein [ AT2G43630 30689439 NP_850396.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18103332 CHROM_POS_END:18104421 } -=| MIDDLE_POINT:18103876 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.26 32 80 246 1 842 274 XLS3_Contig61 AT5G42150 expressed protein [ AT5G42150 15238304 NP_199030.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16863475 CHROM_POS_END:16865137 } -=| MIDDLE_POINT:16864306 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.75 55 143 258 1 990 315 XLS3_Contig62 AT1G48310 SNF2 domain-containing protein / helicase domain-containing protein, contains similarity to DNA-dependent ATPase A GI:6651385 from (Bos taurus)} [ 42562605 NP_175265.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17852288 CHROM_POS_END:17857399 } -=| MIDDLE_POINT:17854843 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.61 47 126 264 1 850 673 XLS3_Contig63 AT3G13960 expressed protein, identical to transcription activator GRL5 (Arabidopsis thaliana) GI:21539888 (unpublished) [ 30682907 NP_188012.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4608533 CHROM_POS_END:4610167 } -=| MIDDLE_POINT:4609350 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.52 54 102 186 1 801 397 XLS3_Contig64 AT2G38670 ethanolamine-phosphate cytidylyltransferase, putative / phosphorylethanolamine transferase, putative / CTP:phosphoethanolamine cytidylyltransferase, putative, similar to SP|Q99447 Ethanolamine-phosphate cytidylyltransferase (EC 2.7.7.14) {Homo sapiens} [ 15224925 NP_181401.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16176057 CHROM_POS_END:16178758 } -=| MIDDLE_POINT:16177407 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.63 74 108 145 1 856 421 XLS3_Contig65 AT1G63220 C2 domain-containing protein, similar to phloem protein RPP16 (Oryza sativa (japonica cultivar-group)) GI:21998839 [ 15221718 NP_176511.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:23452682 CHROM_POS_END:23453909 } -=| MIDDLE_POINT:23453295 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.44 59 87 147 1 766 147 XLS3_Contig66 AT2G21120 expressed protein [ AT2G21120 30681265 NP_179708.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9059184 CHROM_POS_END:9061347 } -=| MIDDLE_POINT:9060265 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 216 302 1 1436 328 XLS3_Contig67 AT1G79120 expressed protein [ AT1G79120 15219295 NP_178033.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:29772207 CHROM_POS_END:29773448 } -=| MIDDLE_POINT:29772827 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.26 54 65 120 1 934 413 XLS3_Contig68 AT2G21620 universal stress protein (USP) family protein / responsive to dessication protein (RD2), strong similarity to RD2 protein (Arabidopsis thaliana) GI:15320408 [ 30681474 NP_850016.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9255829 CHROM_POS_END:9257066 } -=| MIDDLE_POINT:9256447 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.61 74 113 152 1 742 193 XLS3_Contig69 AT3G49240 pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat [ 15229107 NP_190493.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18267071 CHROM_POS_END:18268960 } -=| MIDDLE_POINT:18268015 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.85 61 158 259 1 1039 629 XLS3_Contig70 AT5G52820 WD-40 repeat family protein / notchless protein, putative, similar to notchless (Xenopus laevis) GI:3687833 [ 15237273 NP_200094.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21418649 CHROM_POS_END:21421429 } -=| MIDDLE_POINT:21420039 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 329 409 1 1376 473 XLS3_Contig71 AT2G25840 tRNA synthetase class I (W and Y) family protein, contains Pfam profile: PF00579 tRNA synthetases class I (W and Y) [ 42570919 NP_973533.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:11029002 CHROM_POS_END:11032236 } -=| MIDDLE_POINT:11030619 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.91 65 169 258 1 865 412 XLS3_Contig72 AT4G02090 expressed protein [ AT4G02090 15235229 NP_192118.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:923122 CHROM_POS_END:923730 } -=| MIDDLE_POINT:923426 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.2 36 71 195 1 842 202 XLS3_Contig73 AT5G39890 expressed protein [ AT5G39890 15242505 NP_198805.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15991771 CHROM_POS_END:15993241 } -=| MIDDLE_POINT:15992506 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.43 46 90 194 1 943 276 XLS3_Contig74 AT5G56280 COP9 signalosome subunit 6 / CSN subunit 6 (CSN6A), identical to CSN complex subunit 6A (Arabidopsis thaliana) GI:18056665, COP9 complex subunit 6 (Arabidopsis thaliana) GI:15809663 [ 18423847 NP_568839.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:22800843 CHROM_POS_END:22802756 } -=| MIDDLE_POINT:22801799 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 205 252 1 908 317 XLS3_Contig75 AT5G17920 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS), identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana} [ 15238686 NP_197294.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5935773 CHROM_POS_END:5939197 } -=| MIDDLE_POINT:5937485 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 90 427 473 1 1421 765 XLS3_Contig76 AT5G60800 heavy-metal-associated domain-containing protein, similar to farnesylated protein ATFP3 (GI:4097547) [ 22327990 NP_200888.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:24478342 CHROM_POS_END:24479690 } -=| MIDDLE_POINT:24479016 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.58 48 118 243 1 902 283 XLS3_Contig77 AT5G51430 conserved oligomeric Golgi complex component-related / COG complex component-related, contains weak similarity to Conserved oligomeric Golgi complex component 7 (Swiss-Prot:P83436) (Homo sapiens) [ 15242084 NP_199956.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20904270 CHROM_POS_END:20908021 } -=| MIDDLE_POINT:20906145 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 216 295 1 906 836 XLS3_Contig78 AT4G31880 expressed protein [ AT4G31880 30689185 NP_194916.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15419441 CHROM_POS_END:15423945 } -=| MIDDLE_POINT:15421693 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.73 60 142 234 1 1132 873 XLS3_Contig79 AT4G35790 phospholipase D delta / PLD delta (PLDDELTA), identical to phospholipase D delta SP: Q9C5Y0 from (Arabidopsis thaliana) [ 18419668 NP_567989.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:16955778 CHROM_POS_END:16959879 } -=| MIDDLE_POINT:16957828 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.55 54 91 168 1 875 868 XLS3_Contig80 AT4G32300 lectin protein kinase family protein, contains Pfam domains, PF01453: Lectin (probable mannose binding) and PF00069: Protein kinase domain [ 22329085 NP_194957.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15599976 CHROM_POS_END:15602441 } -=| MIDDLE_POINT:15601208 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.18 63 42 66 1 929 821 XLS3_Contig81 AT4G25280 adenylate kinase family protein, contains Pfam profile: PF00406 adenylate kinase [ 30686829 NP_194258.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12939078 CHROM_POS_END:12940733 } -=| MIDDLE_POINT:12939905 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.56 57 114 200 1 920 249 XLS3_Contig82 AT3G25400 expressed protein [ AT3G25400 30687841 NP_189167.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9214473 CHROM_POS_END:9215381 } -=| MIDDLE_POINT:9214927 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.37 68 71 103 1 663 141 XLS3_Contig83 AT3G63300 expressed protein [ AT3G63300 22331920 NP_191889.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:23396008 CHROM_POS_END:23398600 } -=| MIDDLE_POINT:23397304 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 61 276 447 1 1397 498 XLS3_Contig84 AT2G28950 expansin, putative (EXP6), similar to expansin GI:2828241 from (Brassica napus) [ 15227005 NP_180461.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12438917 CHROM_POS_END:12440559 } -=| MIDDLE_POINT:12439738 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 208 257 1 907 257 XLS3_Contig85 AT2G16460 expressed protein [ AT2G16460 18398123 NP_565388.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7140786 CHROM_POS_END:7142565 } -=| MIDDLE_POINT:7141675 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.83 79 155 195 1 762 230 XLS3_Contig86 no_hits_found 0 0 XLS3_Contig87 AT4G00950 expressed protein [ AT4G00950 15236999 NP_192004.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:405984 CHROM_POS_END:407087 } -=| MIDDLE_POINT:406535 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.18 32 91 281 1 883 291 XLS3_Contig88 AT3G06340 DNAJ heat shock N-terminal domain-containing protein, contains Pfam profile PF00226 DnaJ domain [ 15230701 NP_187285.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1920613 CHROM_POS_END:1922634 } -=| MIDDLE_POINT:1921623 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.46 46 104 226 1 890 673 XLS3_Contig89 AT5G55190 Ras-related GTP-binding protein (RAN3), identical to atran3 (Arabidopsis thaliana) GI:2058280 [ 15240474 NP_200330.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22409511 CHROM_POS_END:22411183 } -=| MIDDLE_POINT:22410347 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 98 218 221 1 975 221 XLS3_Contig90 AT5G04800 40S ribosomal protein S17 (RPS17D), 40S ribosomal protein S17, Lycopersicon esculentum, EMBL:AF161704 [ 15238332 NP_196100.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1389218 CHROM_POS_END:1389643 } -=| MIDDLE_POINT:1389430 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.57 79 118 149 1 751 141 XLS3_Contig91 AT4G28706 pfkB-type carbohydrate kinase family protein, contains Pfam profile: PF00294 pfkB family carbohydrate kinase [ 30688079 NP_849466.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:14167811 CHROM_POS_END:14170625 } -=| MIDDLE_POINT:14169218 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.95 65 175 267 1 949 404 XLS3_Contig92 AT3G13230 expressed protein [ AT3G13230 18399930 NP_566450.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4270430 CHROM_POS_END:4271077 } -=| MIDDLE_POINT:4270753 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.91 78 166 212 1 833 215 XLS3_Contig93 AT5G52450 MATE efflux protein-related, strong similarity to unknown protein (pir||T02324) [ 15237158 NP_200058.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21306268 CHROM_POS_END:21308975 } -=| MIDDLE_POINT:21307621 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.86 63 156 245 1 940 486 XLS3_Contig94 AT2G01420 auxin transport protein, putative, similar to auxin transport protein PIN7(Arabidopsis thaliana) gi|5817305|gb|AAD52697 [ 30677920 NP_849923.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:180477 CHROM_POS_END:183198 } -=| MIDDLE_POINT:181837 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 90 216 238 1 850 616 XLS3_Contig95 AT1G66070 translation initiation factor-related, similar to Eukaryotic translation initiation factor 3 subunit 1 (eIF-3 alpha) (eIF3 p35) (eIF3j) (Swiss-Prot:O75822) (Homo sapiens) [ 18408426 NP_564865.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:24599857 CHROM_POS_END:24601183 } -=| MIDDLE_POINT:24600520 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.8 68 158 232 1 942 226 XLS3_Contig96 AT2G40110 yippee family protein, similar to mdgl-1 (Mus musculus) GI:10441648, Yippee protein (Drosophila melanogaster) GI:5713279 [ 15225631 NP_181540.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:16755237 CHROM_POS_END:16756435 } -=| MIDDLE_POINT:16755836 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.57 77 101 130 1 799 130 XLS3_Contig97 AT5G23310 superoxide dismutase (Fe) / iron superoxide dismutase 3 (FSD3), identical to iron superoxide dismutase 3 (Arabidopsis thaliana) gi|3273757|gb|AAC24834 [ 15237281 NP_197722.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7850627 CHROM_POS_END:7852244 } -=| MIDDLE_POINT:7851435 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.67 65 119 181 1 888 263 XLS3_Contig98 AT4G31700 40S ribosomal protein S6 (RPS6A), ribosomal protein S6, Arabidopsis thaliana, PID:g2662469 [ 15236042 NP_194898.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15346312 CHROM_POS_END:15347720 } -=| MIDDLE_POINT:15347016 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 91 228 250 1 907 250 XLS3_Contig99 AT1G20260 vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative, strong similarity to SP|P11574 Vacuolar ATP synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar proton pump B subunit) (V-ATPase 57 kDa subunit) {Arabidopsis thaliana} [ 42571561 NP_973871.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7016962 CHROM_POS_END:7020280 } -=| MIDDLE_POINT:7018621 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 94 264 280 1 902 485 XLS3_Contig100 AT1G70310 spermidine synthase 2 (SPDSYN2) / putrescine aminopropyltransferase 2, identical to SP|O48661 Spermidine synthase 2 (EC 2.5.1.16) (Putrescine aminopropyltransferase 2) (SPDSY 2) {Arabidopsis thaliana} [ 15223115 NP_177188.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26489160 CHROM_POS_END:26491015 } -=| MIDDLE_POINT:26490087 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 220 268 1 973 340 XLS3_Contig101 AT3G62360 expressed protein [ AT3G62360 15228737 NP_191795.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:23083995 CHROM_POS_END:23091430 } -=| MIDDLE_POINT:23087712 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 175 270 1 1025 1227 XLS3_Contig102 AT1G64660 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme family protein, similar to SP|P13254 Methionine gamma-lyase (EC 4.4.1.11) (L-methioninase) {Pseudomonas putida} [ 15217709 NP_176647.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:24032640 CHROM_POS_END:24034200 } -=| MIDDLE_POINT:24033420 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 310 434 1 1352 441 XLS3_Contig103 AT2G37690 phosphoribosylaminoimidazole carboxylase, putative [ AT2G37690 42569706 NP_181305.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15813189 CHROM_POS_END:15817318 } -=| MIDDLE_POINT:15815253 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.3 66 63 95 1 1654 642 XLS3_Contig104 AT4G02570 cullin family protein, similar to cullin 3 (Homo sapiens) GI:3639052 [ 18411983 NP_567243.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1129315 CHROM_POS_END:1133435 } -=| MIDDLE_POINT:1131375 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 84 212 251 1 908 738 XLS3_Contig105 no_hits_found 0 0 XLS3_Contig106 AT5G52070 agenet domain-containing protein, contains Pfam PF05641: Agenet domain [ 22327754 NP_200020.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21179342 CHROM_POS_END:21181943 } -=| MIDDLE_POINT:21180642 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.34 38 82 213 1 769 271 XLS3_Contig107 AT5G66390 peroxidase 72 (PER72) (P72) (PRXR8), identical to SP|Q9FJZ9 Peroxidase 72 precursor (EC 1.11.1.7) (Atperox P72) (PRXR8) (ATP6a) {Arabidopsis thaliana} [ 15239370 NP_201440.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26533289 CHROM_POS_END:26534555 } -=| MIDDLE_POINT:26533922 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 223 308 1 1178 336 XLS3_Contig108 AT5G17920 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase / vitamin-B12-independent methionine synthase / cobalamin-independent methionine synthase (CIMS), identical to SP|O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana} [ 15238686 NP_197294.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5935773 CHROM_POS_END:5939197 } -=| MIDDLE_POINT:5937485 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 214 255 1 866 765 XLS3_Contig109 AT2G36530 enolase, identical to SWISS-PROT:P25696 enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)(2-phospho-D- glycerate hydro-lyase) (Arabidopsis thaliana) [ 15227987 NP_181192.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15328160 CHROM_POS_END:15330865 } -=| MIDDLE_POINT:15329512 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 210 247 1 850 444 XLS3_Contig110 AT3G46640 myb family transcription factor, contains Pfam profile: PF00249 myb-like DNA-binding domain [ 15232597 NP_190248.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17194233 CHROM_POS_END:17195204 } -=| MIDDLE_POINT:17194718 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.59 50 139 274 1 925 323 XLS3_Contig111 AT3G63030 methyl-CpG-binding domain-containing protein, contains Pfam profile PF01429: Methyl-CpG binding domain [ 15229373 NP_191862.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:23306369 CHROM_POS_END:23307400 } -=| MIDDLE_POINT:23306884 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.44 51 75 147 1 1460 186 XLS3_Contig112 AT3G30775 proline oxidase, mitochondrial / osmotic stress-responsive proline dehydrogenase (POX) (PRO1) (ERD5), nearly identical to SP|P92983 Proline oxidase, mitochondrial precursor (EC 1.5.3.-) (Osmotic stress- induced proline dehydrogenase) (Arabidopsis thaliana) [ 42565343 NP_189701.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12451359 CHROM_POS_END:12453605 } -=| MIDDLE_POINT:12452482 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.57 54 115 210 1 899 499 XLS3_Contig113 AT3G05010 transmembrane protein, putative, similar to GB:AAB61079 [ AT3G05010 18397089 NP_566244.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1389609 CHROM_POS_END:1391468 } -=| MIDDLE_POINT:1390538 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.42 49 88 179 1 892 300 XLS3_Contig114 AT4G09670 oxidoreductase family protein, similar to AX110P (Daucus carota) GI:285739 [ 15233990 NP_192705.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6107379 CHROM_POS_END:6109046 } -=| MIDDLE_POINT:6108212 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 181 274 1 925 362 XLS3_Contig115 AT2G19950 similar to expressed protein [Arabidopsis thaliana] (TAIR:At1g18190.1) [ 79557632 NP_179585.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8623422 CHROM_POS_END:8628300 } -=| MIDDLE_POINT:8625861 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.13 30 61 203 1 902 707 XLS3_Contig116 AT5G58270 mitochondrial half-ABC transporter (STA1), identical to half-molecule ABC transporter ATM3 GI:9964121 from (Arabidopsis thaliana) [ 15237155 NP_200635.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:23579394 CHROM_POS_END:23584266 } -=| MIDDLE_POINT:23581830 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.78 64 156 242 1 1121 728 XLS3_Contig117 AT3G61590 F-box family protein, contains weak hit to Pfam PF00646: F-box domain [ 15233154 NP_191718.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22803889 CHROM_POS_END:22805124 } -=| MIDDLE_POINT:22804506 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.46 58 93 160 1 905 411 XLS3_Contig118 no_hits_found 0 0 XLS3_Contig119 AT5G44200 nuclear cap-binding protein, putative, similar to SP|P52298 20 kDa nuclear cap binding protein (CBP20) (NCBP interacting protein 1) {Homo sapiens} [ 15241430 NP_199233.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17819289 CHROM_POS_END:17821102 } -=| MIDDLE_POINT:17820195 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 153 194 1 877 257 XLS3_Contig120 AT5G41210 glutathione S-transferase (GST10), identical to glutathione transferase AtGST 10 (Arabidopsis thaliana) GI:4049401 [ 15237583 NP_198937.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16509778 CHROM_POS_END:16511112 } -=| MIDDLE_POINT:16510445 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.82 63 151 239 1 875 245 XLS3_Contig121 AT5G49840 ATP-dependent Clp protease ATP-binding subunit ClpX, putative, similar to CLP protease regulatory subunit CLPX GI:2674203 from (Arabidopsis thaliana) [ 18423073 NP_568714.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20272469 CHROM_POS_END:20276261 } -=| MIDDLE_POINT:20274365 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.48 47 98 206 1 949 606 XLS3_Contig122 AT5G19400 similar to expressed protein [Arabidopsis thaliana] (TAIR:At1g28260.2) [ 79516777 NP_197441.3 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6540605 CHROM_POS_END:6544264 } -=| MIDDLE_POINT:6542434 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.27 35 78 220 1 1656 1059 XLS3_Contig123 AT2G42560 late embryogenesis abundant domain-containing protein / LEA domain-containing protein, low similarity to LEA protein (Glycine max) GI:1389897 [ 15227965 NP_181784.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17721891 CHROM_POS_END:17723899 } -=| MIDDLE_POINT:17722895 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.33 33 102 308 1 871 635 XLS3_Contig124 AT1G75500 nodulin MtN21 family protein, similar to MtN21 GB:CAA75575 GI:2598575 from (Medicago truncatula) (Mol. Plant Microbe Interact. 9 (4), 233-242 (1996)) [ 18410867 NP_565111.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:28341943 CHROM_POS_END:28343752 } -=| MIDDLE_POINT:28342847 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 185 257 1 931 389 XLS3_Contig125 AT4G11030 long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative, similar to acyl-CoA synthetase (MF7P) gi:1617270 from Brassica napus [ 15237023 NP_192841.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6738116 CHROM_POS_END:6742225 } -=| MIDDLE_POINT:6740170 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.91 68 148 217 1 868 666 XLS3_Contig126 AT5G20950 glycosyl hydrolase family 3 protein, beta-D-glucan exohydrolase, Nicotiana tabacum, EMBL:AB017502 [ 30688067 NP_851048.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7107611 CHROM_POS_END:7110777 } -=| MIDDLE_POINT:7109194 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 234 332 1 1086 624 XLS3_Contig127 AT2G31140 expressed protein [ AT2G31140 30684839 NP_180672.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:13277165 CHROM_POS_END:13278696 } -=| MIDDLE_POINT:13277930 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.71 61 126 205 1 767 205 XLS3_Contig128 AT5G46280 DNA replication licensing factor, putative, similar to SP|Q43704 DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) {Zea mays} [ 15237411 NP_199440.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18787129 CHROM_POS_END:18790833 } -=| MIDDLE_POINT:18788981 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 247 341 1 1071 776 XLS3_Contig129 AT1G10580 transducin family protein / WD-40 repeat family protein, similar to splicing factor hPRP17 (gi|3283220) [ 30681779 NP_172528.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3491561 CHROM_POS_END:3493666 } -=| MIDDLE_POINT:3492613 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 186 283 1 932 573 XLS3_Contig130 AT1G22380 similar to UDP-glucose glucosyltransferase, putative [Arabidopsis thaliana] (TAIR:At1g78270.1) [ 79349376 NP_173655.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7900511 CHROM_POS_END:7902321 } -=| MIDDLE_POINT:7901416 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.7 50 132 263 1 887 488 XLS3_Contig131 AT2G40190 glycosyl transferase family 1 protein, contains Pfam profile: PF00534 Glycosyl transferases group 1 [ 42569790 NP_181548.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16792310 CHROM_POS_END:16794335 } -=| MIDDLE_POINT:16793322 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 207 281 1 1034 463 XLS3_Contig132 AT2G14740 vacuolar sorting receptor, putative, nearly identical to vacuolar sorting receptor homolog (Arabidopsis thaliana) GI:1737220 [ 15225998 NP_179081.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:6315977 CHROM_POS_END:6319385 } -=| MIDDLE_POINT:6317681 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 282 339 1 1302 628 XLS3_Contig133 AT5G10980 histone H3, identical to HISTONE H3.2, MINOR, Medicago sativa, SWISSPROT:P11105, histone H3 variant H3.3 Lycopersicon esculentum GI:1435157 [ 15238916 NP_196659.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3472592 CHROM_POS_END:3473350 } -=| MIDDLE_POINT:3472971 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.71 100 136 136 1 733 136 XLS3_Contig134 AT1G32400 senescence-associated family protein, contains Pfam profile PF00335: Tetraspanin family [ 18398417 NP_564399.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:11689373 CHROM_POS_END:11690853 } -=| MIDDLE_POINT:11690113 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.89 62 152 243 1 867 280 XLS3_Contig135 AT2G41790 peptidase M16 family protein / insulinase family protein, contains Pfam domain, PF05193: Peptidase M16 inactive domain [ 15227435 NP_181710.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17436531 CHROM_POS_END:17443188 } -=| MIDDLE_POINT:17439859 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 200 259 1 837 970 XLS3_Contig136 no_hits_found 0 0 XLS3_Contig137 AT4G32850 similar to nucleotidyltransferase family protein [Arabidopsis thaliana] (TAIR:At1g17980.1) [ 79326212 NP_001031779.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:15850138 CHROM_POS_END:15854447 } -=| MIDDLE_POINT:15852292 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.84 78 109 139 1 886 765 XLS3_Contig138 AT1G15860 expressed protein [ AT1G15860 18394292 NP_563983.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5455050 CHROM_POS_END:5456735 } -=| MIDDLE_POINT:5455892 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.88 68 157 228 1 970 225 XLS3_Contig139 AT5G27850 60S ribosomal protein L18 (RPL18C), 60S ribosomal protein L18, Arabidopsis thaliana, SWISSPROT:RL18_ARATH [ 15241061 NP_198137.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9873173 CHROM_POS_END:9874301 } -=| MIDDLE_POINT:9873737 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.89 84 158 186 1 816 187 XLS3_Contig140 no_hits_found 0 0 XLS3_Contig141 no_hits_found 0 0 XLS3_Contig142 AT3G24750 expressed protein [ AT3G24750 79416717 NP_189119.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9036742 CHROM_POS_END:9037571 } -=| MIDDLE_POINT:9037156 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.11 36 49 135 1 901 169 XLS3_Contig143 AT3G57610 adenylosuccinate synthetase (ADSS), identical to adenylosuccinate synthetase, chloroplast precursor (EC 6.3.4.4) (IMP-- aspartate ligase) (AdSS) (AMPSase) (Swiss-Prot:Q96529) (Arabidopsis thaliana) [ 15230358 NP_191320.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21345496 CHROM_POS_END:21347580 } -=| MIDDLE_POINT:21346538 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 207 288 1 900 490 XLS3_Contig144 AT4G02120 CTP synthase, putative / UTP--ammonia ligase, putative, similar to SP|P17812 CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) {Homo sapiens} [ 30679055 NP_192121.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:940873 CHROM_POS_END:944097 } -=| MIDDLE_POINT:942485 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 408 476 1 1554 556 XLS3_Contig145 AT4G02570 cullin family protein, similar to cullin 3 (Homo sapiens) GI:3639052 [ 18411983 NP_567243.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1129315 CHROM_POS_END:1133435 } -=| MIDDLE_POINT:1131375 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 398 501 1 1716 738 XLS3_Contig146 AT5G02560 histone H2A, putative, similar to histone H2A from Pisum sativum SP|P25470, Zea mays SP|P40280, Petroselinum crispum SP|P19177 [ 15241857 NP_195876.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:575435 CHROM_POS_END:576454 } -=| MIDDLE_POINT:575944 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.63 81 125 153 1 662 153 XLS3_Contig147 AT1G08830 superoxide dismutase (Cu-Zn) (SODCC) / copper/zinc superoxide dismutase (CSD1), identical to SWISS-PROT: P24704 [ 15223944 NP_172360.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2827703 CHROM_POS_END:2829056 } -=| MIDDLE_POINT:2828379 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.67 80 122 152 1 684 152 XLS3_Contig148 AT3G52560 ubiquitin-conjugating enzyme family protein, similar to DNA-binding protein CROC-1B (Homo sapiens) GI:1066082 [ 30693656 NP_850684.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:19505656 CHROM_POS_END:19506932 } -=| MIDDLE_POINT:19506294 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.78 91 135 147 1 777 147 XLS3_Contig149 AT3G47070 expressed protein [ AT3G47070 15232724 NP_190291.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17348190 CHROM_POS_END:17348492 } -=| MIDDLE_POINT:17348341 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.13 46 41 89 1 583 100 XLS3_Contig150 AT4G35300 transporter-related, low similarity to hexose transporter (Solanum tuberosum) GI:8347246 [ 30690286 NP_849565.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:16796437 CHROM_POS_END:16799076 } -=| MIDDLE_POINT:16797756 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 366 509 1 1592 739 XLS3_Contig151 AT5G26830 threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS), identical to SP|O04630 Threonyl-tRNA synthetase, mitochondrial precursor (EC 6.1.1.3) (Threonine--tRNA ligase) (ThrRS) {Arabidopsis thaliana} [ 30690426 NP_198035.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9437354 CHROM_POS_END:9441571 } -=| MIDDLE_POINT:9439462 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 190 278 1 926 709 XLS3_Contig152 AT1G16860 merozoite surface protein-related, contains weak similarity to merozoite surface protein (Plasmodium falciparum) gi|12043655|gb|AAG47601 [ 18394411 NP_564009.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5768273 CHROM_POS_END:5770176 } -=| MIDDLE_POINT:5769224 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.62 50 143 286 1 1020 474 XLS3_Contig153 AT5G65750 2-oxoglutarate dehydrogenase E1 component, putative [ AT5G65750 15239128 NP_201376.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:26321438 CHROM_POS_END:26325173 } -=| MIDDLE_POINT:26323305 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 84 235 278 1 982 1025 XLS3_Contig154 AT4G28100 expressed protein [ AT4G28100 18417127 NP_567797.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13965306 CHROM_POS_END:13966703 } -=| MIDDLE_POINT:13966004 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.92 67 170 253 1 902 304 XLS3_Contig155 AT3G18430 calcium-binding EF hand family protein, similar to Calcineurin B subunit (Protein phosphatase 2B regulatory subunit) (Calcineurin regulatory subunit) SP:P42322 from (Naegleria gruberi) [ 18401887 NP_566610.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6326186 CHROM_POS_END:6327482 } -=| MIDDLE_POINT:6326834 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.71 74 131 175 1 989 175 XLS3_Contig156 AT3G07880 Rho GDP-dissociation inhibitor family protein, similar to SP|P52565 Rho GDP-dissociation inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens} [ 15231890 NP_187445.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2514181 CHROM_POS_END:2515550 } -=| MIDDLE_POINT:2514865 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.74 75 79 105 1 910 240 XLS3_Contig157 AT1G35680 50S ribosomal protein L21, chloroplast / CL21 (RPL21), identical to 50S ribosomal protein L21, chloroplast precursor (CL21) (Arabidopsis thaliana) SWISS-PROT:P51412 [ 15219695 NP_174808.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:13209989 CHROM_POS_END:13211458 } -=| MIDDLE_POINT:13210723 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.53 56 120 213 1 846 220 XLS3_Contig158 AT5G67070 rapid alkalinization factor (RALF) family protein, similar to RALF precursor (Nicotiana tabacum) GI:16566316 [ 15240191 NP_201508.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:26785346 CHROM_POS_END:26785735 } -=| MIDDLE_POINT:26785540 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.29 52 64 121 1 619 129 XLS3_Contig159 AT5G61790 calnexin 1 (CNX1), identical to calnexin homolog 1, Arabidopsis thaliana, EMBL:AT08315 (SP|P29402) [ 15240353 NP_200987.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:24844620 CHROM_POS_END:24846868 } -=| MIDDLE_POINT:24845744 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 201 249 1 882 530 XLS3_Contig160 no_hits_found 0 0 XLS3_Contig161 AT1G78420 expressed protein [ AT1G78420 18411948 NP_565180.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:29510171 CHROM_POS_END:29512165 } -=| MIDDLE_POINT:29511168 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 61 191 309 1 1239 401 XLS3_Contig162 AT1G43580 expressed protein [ AT1G43580 18400935 NP_564484.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16413113 CHROM_POS_END:16415052 } -=| MIDDLE_POINT:16414082 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 186 284 1 941 421 XLS3_Contig163 no_hits_found 0 0 XLS3_Contig164 AT4G22670 tetratricopeptide repeat (TPR)-containing protein, similar to Hsc70-interacting protein (Hip) from {Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503 [ 18415982 NP_567663.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11918247 CHROM_POS_END:11920682 } -=| MIDDLE_POINT:11919464 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 62 213 341 1 890 441 XLS3_Contig165 AT4G37990 mannitol dehydrogenase, putative (ELI3-2), identical to GI:16269 [ 15233643 NP_195512.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17855958 CHROM_POS_END:17857382 } -=| MIDDLE_POINT:17856670 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 172 259 1 893 359 XLS3_Contig166 no_hits_found 0 0 XLS3_Contig167 no_hits_found 0 0 XLS3_Contig168 AT4G12060 Clp amino terminal domain-containing protein, contains Pfam profile: PF02861 Clp amino terminal domain [ 18413740 NP_567386.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7228263 CHROM_POS_END:7229892 } -=| MIDDLE_POINT:7229077 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.6 51 123 241 1 834 241 XLS3_Contig169 AT1G24265 expressed protein [ AT1G24265 22329773 NP_683327.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:8600602 CHROM_POS_END:8603619 } -=| MIDDLE_POINT:8602110 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.61 59 106 178 1 1047 348 XLS3_Contig170 AT1G09020 protein kinase, putative, similar to protein kinase AKINbetagamma-2 (Zea mays) GI:11139548, AKINbetagamma-1 (Zea mays) GI:11139546 [ 18390971 NP_563834.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2900152 CHROM_POS_END:2904215 } -=| MIDDLE_POINT:2902183 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.39 40 86 212 1 996 487 XLS3_Contig171 no_hits_found 0 0 XLS3_Contig172 AT2G19430 transducin family protein / WD-40 repeat family protein, similar to WD-repeat protein 5 (SP:Q9UGP9) (Homo sapiens) [ 30680669 NP_849989.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8422299 CHROM_POS_END:8424822 } -=| MIDDLE_POINT:8423560 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.9 56 156 275 1 933 367 XLS3_Contig173 AT2G26710 cytochrome P450, putative [ AT2G26710 15225777 NP_180239.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11387778 CHROM_POS_END:11390491 } -=| MIDDLE_POINT:11389134 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.68 39 95 238 1 1556 520 XLS3_Contig174 AT4G13930 glycine hydroxymethyltransferase, putative / serine hydroxymethyltransferase, putative / serine/threonine aldolase, putative, similar to serine hydroxymethyltransferase (Chlamydomonas reinhardtii) GI:17066746 [ 15236375 NP_193129.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8048008 CHROM_POS_END:8050016 } -=| MIDDLE_POINT:8049012 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 88 243 274 1 896 471 XLS3_Contig175 AT2G17390 ankyrin repeat family protein, contains ankyrin repeats, Pfam:PF00023 [ 15227825 NP_179331.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7562952 CHROM_POS_END:7564825 } -=| MIDDLE_POINT:7563888 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.91 61 169 274 1 906 344 XLS3_Contig176 AT4G32440 agenet domain-containing protein, contains Pfam PF05641: Agenet domain [ 42573127 NP_974660.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:15657301 CHROM_POS_END:15659360 } -=| MIDDLE_POINT:15658330 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.32 42 91 216 1 938 393 XLS3_Contig177 AT5G61510 NADP-dependent oxidoreductase, putative, similar to zeta-crystallin homolog TED2 from Zinnia elegans (gi:531096) [ 42568692 NP_200959.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:24754310 CHROM_POS_END:24756201 } -=| MIDDLE_POINT:24755255 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 225 292 1 994 406 XLS3_Contig178 AT4G16830 nuclear RNA-binding protein (RGGA), identical to nuclear RNA binding protein GI:6492264 from (Arabidopsis thaliana) [ 15235894 NP_193416.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9470640 CHROM_POS_END:9472327 } -=| MIDDLE_POINT:9471483 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.62 54 143 262 1 938 355 XLS3_Contig179 AT3G19450 cinnamyl-alcohol dehydrogenase (CAD), identical to SP|P48523 Cinnamyl-alcohol dehydrogenase (EC 1.1.1.195) (CAD) (Arabidopsis thaliana) [ 15230382 NP_188576.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6744865 CHROM_POS_END:6747011 } -=| MIDDLE_POINT:6745938 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 191 240 1 891 365 XLS3_Contig180 AT5G24520 transparent testa glabra 1 protein (TTG1), identical to transparent testa glabra 1 (Ttg1) protein (GI:10177852) {Arabidopsis thaliana} [ 30689487 NP_851069.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:8371711 CHROM_POS_END:8372736 } -=| MIDDLE_POINT:8372223 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 199 260 1 884 341 XLS3_Contig181 AT1G08960 similar to cation exchanger, putative (CAX7) [Arabidopsis thaliana] (TAIR:At5g17860.1) [ 79339424 NP_172370.3 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2879701 CHROM_POS_END:2881880 } -=| MIDDLE_POINT:2880790 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.77 59 156 263 1 933 546 XLS3_Contig182 AT3G07670 SET domain-containing protein, similar to ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I (Spinacia oleracea) GI:3403236 [ 15231493 NP_187424.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2451657 CHROM_POS_END:2454623 } -=| MIDDLE_POINT:2453140 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 202 286 1 959 504 XLS3_Contig183 AT3G22850 expressed protein, similar to auxin down-regulated protein ARG10 (Vigna radiata) GI:2970051, wali7 (aluminum-induced protein) (Triticum aestivum) GI:451193 [ 15228883 NP_188925.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8089074 CHROM_POS_END:8090282 } -=| MIDDLE_POINT:8089678 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 181 248 1 1394 248 XLS3_Contig184 AT5G62030 diphthamide synthesis DPH2 family protein, contains InterPro accession IPR002728: Diphthamide synthesis DPH2 protein [ 15240408 NP_201009.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:24936272 CHROM_POS_END:24937633 } -=| MIDDLE_POINT:24936952 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.94 68 172 252 1 944 453 XLS3_Contig185 AT1G02840 pre-mRNA splicing factor SF2 (SF2) / SR1 protein, identical to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} [ 30678391 NP_850933.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:626918 CHROM_POS_END:629583 } -=| MIDDLE_POINT:628250 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.96 68 182 265 1 1005 303 XLS3_Contig186 AT3G53190 pectate lyase family protein, similar to pectate lyase 2 GP:6606534 from (Musa acuminata) [ 18409790 NP_566979.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19725149 CHROM_POS_END:19728515 } -=| MIDDLE_POINT:19726832 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 175 248 1 868 483 XLS3_Contig187 AT4G21350 U-box domain-containing protein, similar to immediate-early fungal elicitor protein CMPG1 (Petroselinum crispum) GI:14582198 [ 15234419 NP_193866.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11356154 CHROM_POS_END:11357278 } -=| MIDDLE_POINT:11356716 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.79 62 156 249 1 810 374 XLS3_Contig188 AT3G12680 floral homeotic protein (HUA1), identical to floral homeotic protein HUA1 (Arabidopsis thaliana) gi|16797661|gb|AAK01470 [ 22331028 NP_187874.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4025283 CHROM_POS_END:4029006 } -=| MIDDLE_POINT:4027144 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.67 50 134 265 1 872 524 XLS3_Contig189 AT2G30660 3-hydroxyisobutyryl-coenzyme A hydrolase, putative [ AT2G30660 42569479 NP_180624.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13065577 CHROM_POS_END:13068742 } -=| MIDDLE_POINT:13067159 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.77 50 144 283 1 910 378 XLS3_Contig190 AT5G52540 expressed protein, contains PF05684: Protein of unknown function (DUF819) [ 15237188 NP_200067.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21338898 CHROM_POS_END:21340928 } -=| MIDDLE_POINT:21339913 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.61 76 96 125 1 953 461 XLS3_Contig191 AT4G33150 lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme, identical to lysine-ketoglutarate reductase/saccharopine dehydrogenase GI:2052508 from (Arabidopsis thaliana) [ 18418158 NP_567914.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:15985482 CHROM_POS_END:15991072 } -=| MIDDLE_POINT:15988277 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 60 194 319 1 1058 1064 XLS3_Contig192 AT5G51600 microtubule associated protein (MAP65/ASE1) family protein, low similarity to SP|P50275 Anaphase spindle elongation protein {Saccharomyces cerevisiae}, protein regulating cytokinesis 1 (PRC1) (Homo sapiens) GI:2865521 [ 15242132 NP_199973.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20978287 CHROM_POS_END:20981306 } -=| MIDDLE_POINT:20979796 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.73 65 138 211 1 850 707 XLS3_Contig193 AT3G02560 40S ribosomal protein S7 (RPS7B), similar to ribosomal protein S7 GB:AAD26256 from (Secale cereale) [ 15232926 NP_186905.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:542348 CHROM_POS_END:543175 } -=| MIDDLE_POINT:542761 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.81 74 143 191 1 828 191 XLS3_Contig194 AT2G26560 patatin, putative, similar to patatin-like latex allergen (Hevea brasiliensis)(PMID:10589016) [ 15225332 NP_180224.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11300990 CHROM_POS_END:11302786 } -=| MIDDLE_POINT:11301888 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.98 59 174 291 1 882 407 XLS3_Contig195 AT5G48220 indole-3-glycerol phosphate synthase, putative, similar to SP|P49572 [ 15238914 NP_199633.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19567156 CHROM_POS_END:19569272 } -=| MIDDLE_POINT:19568214 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 236 331 1 1234 379 XLS3_Contig196 AT1G72480 expressed protein [ AT1G72480 15218497 NP_177392.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:27289966 CHROM_POS_END:27292001 } -=| MIDDLE_POINT:27290983 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 191 282 1 971 509 XLS3_Contig197 AT5G64170 dentin sialophosphoprotein-related, contains weak similarity to Swiss-Prot:Q9NZW4 dentin sialophosphoprotein precursor (Homo sapiens) [ 15237638 NP_201222.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:25690130 CHROM_POS_END:25692671 } -=| MIDDLE_POINT:25691400 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.18 38 60 156 1 910 566 XLS3_Contig198 AT3G61220 short-chain dehydrogenase/reductase (SDR) family protein, similar to carbonyl reductase GI:1049108 from (Mus musculus) [ 15233062 NP_191681.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22674000 CHROM_POS_END:22675291 } -=| MIDDLE_POINT:22674645 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.99 63 181 283 1 923 296 XLS3_Contig199 AT2G38940 phosphate transporter (PT2), identical to phosphate transporter (AtPT2) (Arabidopsis thaliana) GI:1502430 [ 15224985 NP_181428.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16265578 CHROM_POS_END:16267182 } -=| MIDDLE_POINT:16266380 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 342 422 1 1372 534 XLS3_Contig200 AT3G05580 serine/threonine protein phosphatase, putative, similar to serine/threonine protein phosphatase PP1 isozyme 8 SP:O82734 from (Arabidopsis thaliana) [ 15230010 NP_187209.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1618222 CHROM_POS_END:1619856 } -=| MIDDLE_POINT:1619039 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 91 211 231 1 920 318 XLS3_Contig201 AT4G30200 expressed protein, contains weak similarities to Pfam profiles: PF00041 Fibronectin type III domain, PF00628 PHD-finger [ 15234667 NP_194749.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:14786858 CHROM_POS_END:14790076 } -=| MIDDLE_POINT:14788467 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.61 54 124 228 1 914 714 XLS3_Contig202 AT2G46040 ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein, contains Pfam profiles PF01388: ARID/BRIGHT DNA binding domain, PF01448: ELM2 domain [ 30690195 NP_182128.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18942757 CHROM_POS_END:18944880 } -=| MIDDLE_POINT:18943818 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.23 44 55 124 1 960 562 XLS3_Contig203 AT3G08590 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative, strong similarity to SP|Q42908 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) {Mesembryanthemum crystallinum} [ 15231939 NP_187471.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2608689 CHROM_POS_END:2611243 } -=| MIDDLE_POINT:2609966 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 211 266 1 835 560 XLS3_Contig204 AT1G70370 BURP domain-containing protein / polygalacturonase, putative, similar to polygalacturonase isoenzyme 1 beta subunit (Lycopersicon esculentum) GI:170480 [ 15223133 NP_177194.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26516666 CHROM_POS_END:26518661 } -=| MIDDLE_POINT:26517663 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.94 61 168 272 1 874 626 XLS3_Contig205 AT3G25700 chloroplast nucleoid DNA-binding protein-related, contains weak similarity to CND41, chloroplast nucleoid DNA binding protein (GI:2541876) (Nicotiana tabacum) [ 15230868 NP_189198.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9360174 CHROM_POS_END:9361532 } -=| MIDDLE_POINT:9360853 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.9 59 164 277 1 930 452 XLS3_Contig206 AT1G01880 DNA repair protein, putative, similar to Swiss-Prot:P28706 DNA repair protein rad13 (Schizosaccharomyces pombe) [ 15223502 NP_171691.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:306558 CHROM_POS_END:308991 } -=| MIDDLE_POINT:307774 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 185 249 1 899 570 XLS3_Contig207 no_hits_found 0 0 XLS3_Contig208 AT5G07240 calmodulin-binding family protein, contains Pfam profile PF00612: IQ calmodulin-binding motif [ 15240730 NP_196341.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2272029 CHROM_POS_END:2274052 } -=| MIDDLE_POINT:2273040 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.43 45 125 277 1 810 401 XLS3_Contig209 AT5G09650 inorganic pyrophosphatase family protein, similar to SP|Q15181 Inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate {Homo sapiens} [ 15242465 NP_196527.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2991332 CHROM_POS_END:2993118 } -=| MIDDLE_POINT:2992225 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 185 265 1 922 300 XLS3_Contig210 AT5G17230 phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase, identical to GB:L25812 [ 15237933 NP_197225.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:5659841 CHROM_POS_END:5662089 } -=| MIDDLE_POINT:5660965 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.93 83 108 130 1 1174 422 XLS3_Contig211 AT1G71230 COP9 signalosome subunit 5A / CSN subunit 5A (CSN5A) / c-JUN coactivator protein AJH2, putative (AJH2), COP9 complex subunit CSN5-2 [ 15224003 NP_177279.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:26856222 CHROM_POS_END:26857917 } -=| MIDDLE_POINT:26857069 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 87 240 273 1 888 358 XLS3_Contig212 AT4G22010 multi-copper oxidase type I family protein, similar to pollen-specific BP10 protein (SP|Q00624)(Brassica napus) [ 15234688 NP_193932.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11663441 CHROM_POS_END:11666475 } -=| MIDDLE_POINT:11664958 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 287 414 1 1360 541 XLS3_Contig213 AT4G10960 UDP-glucose 4-epimerase, putative / UDP-galactose 4-epimerase, putative / Galactowaldenase, putative, similar to UDP-galactose 4-epimerase from Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba GI:3021357 (AJ005082) [ 15236988 NP_192834.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:6716079 CHROM_POS_END:6718468 } -=| MIDDLE_POINT:6717273 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.94 76 158 206 1 915 351 XLS3_Contig214 AT5G10920 argininosuccinate lyase, putative / arginosuccinase, putative, similar to argininosuccinate lyase (Nostoc punctiforme) GI:7672743 [ 15238899 NP_196653.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3441806 CHROM_POS_END:3443893 } -=| MIDDLE_POINT:3442849 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.98 68 183 266 1 948 517 XLS3_Contig215 AT4G24550 clathrin adaptor complexes medium subunit family protein, contains Pfam profile: PF00928 adaptor complexes medium subunit family [ 15233859 NP_194186.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:12675883 CHROM_POS_END:12678913 } -=| MIDDLE_POINT:12677398 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 87 285 325 1 1117 451 XLS3_Contig216 AT4G24760 expressed protein [ AT4G24760 15233975 NP_194207.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12761492 CHROM_POS_END:12763574 } -=| MIDDLE_POINT:12762533 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.9 75 156 208 1 890 365 XLS3_Contig217 AT1G62740 stress-inducible protein, putative, similar to sti (stress inducible protein) (Glycine max) GI:872116 [ 15221564 NP_176461.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:23234691 CHROM_POS_END:23237045 } -=| MIDDLE_POINT:23235868 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 333 456 1 1430 571 XLS3_Contig218 AT1G27060 regulator of chromosome condensation (RCC1) family protein, low similiarity to UVB-resistance protein UVR8 (Arabidopsis thaliana) GI:5478530 [ 15223423 NP_174026.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9395010 CHROM_POS_END:9396660 } -=| MIDDLE_POINT:9395835 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.75 60 139 231 1 1211 386 XLS3_Contig219 no_hits_found 0 0 XLS3_Contig220 AT4G39520 GTP-binding protein, putative, similar to SP|Q9Y295 Developmentally regulated GTP-binding protein 1 (DRG 1) {Homo sapiens} [ 15235111 NP_195662.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18371323 CHROM_POS_END:18373994 } -=| MIDDLE_POINT:18372658 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 91 255 278 1 964 369 XLS3_Contig221 AT1G09900 pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat [ 15218325 NP_172461.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3218135 CHROM_POS_END:3219931 } -=| MIDDLE_POINT:3219033 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 63 239 377 1 1300 598 XLS3_Contig222 AT3G19910 zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) [ 18402411 NP_566651.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6926503 CHROM_POS_END:6929330 } -=| MIDDLE_POINT:6927916 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.61 50 131 261 1 941 340 XLS3_Contig223 AT1G01420 UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase [ 15223396 NP_171649.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:154566 CHROM_POS_END:156011 } -=| MIDDLE_POINT:155288 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.79 52 148 282 1 863 481 XLS3_Contig224 AT4G29040 26S proteasome AAA-ATPase subunit (RPT2a), almost identical to 26S proteasome AAA-ATPase subunit RPT2a (GI:6652880) {Arabidopsis thaliana} [ 15235544 NP_194633.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:14312375 CHROM_POS_END:14314392 } -=| MIDDLE_POINT:14313383 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 93 245 261 1 877 443 XLS3_Contig225 AT4G35760 expressed protein [ AT4G35760 18419647 NP_567988.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16942738 CHROM_POS_END:16944627 } -=| MIDDLE_POINT:16943682 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.66 51 126 243 1 899 376 XLS3_Contig226 AT5G67030 zeaxanthin epoxidase (ZEP) (ABA1), identical to GI:9857296 AtABA1 [ 30698272 NP_851285.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:26770971 CHROM_POS_END:26774316 } -=| MIDDLE_POINT:26772643 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.86 65 170 259 1 912 667 XLS3_Contig227 AT4G17150 expressed protein, similar to expressed protein [Arabidopsis thaliana] (TAIR:At3g23540.1) [ 79476960 NP_193448.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9638602 CHROM_POS_END:9641659 } -=| MIDDLE_POINT:9640130 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.99 84 171 202 1 838 502 XLS3_Contig228 AT3G53110 DEAD/DEAH box helicase, putative, RNA helicase, Mus musculus, PIR:I49731 [ 15231748 NP_190879.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19698946 CHROM_POS_END:19701401 } -=| MIDDLE_POINT:19700173 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.93 62 178 285 1 922 496 XLS3_Contig229 AT5G20950 glycosyl hydrolase family 3 protein, beta-D-glucan exohydrolase, Nicotiana tabacum, EMBL:AB017502 [ 30688067 NP_851048.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7107611 CHROM_POS_END:7110777 } -=| MIDDLE_POINT:7109194 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.76 69 135 194 1 900 624 XLS3_Contig230 AT3G13340 WD-40 repeat family protein, contains Pfam profile: PF00400 WD domain, G-beta repeat (3 copies, 1 significant) [ 18399975 NP_566453.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4332377 CHROM_POS_END:4334610 } -=| MIDDLE_POINT:4333493 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.99 64 174 268 1 936 447 XLS3_Contig231 AT5G19440 cinnamyl-alcohol dehydrogenase, putative (CAD), similar to cinnamyl-alcohol dehydrogenase, Eucalyptus gunnii (GI:1143445), apple tree, PIR:T16995 [ 15239741 NP_197445.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6556495 CHROM_POS_END:6558125 } -=| MIDDLE_POINT:6557310 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.88 66 106 160 1 968 326 XLS3_Contig232 AT1G52190 proton-dependent oligopeptide transport (POT) family protein, contains Pfam profile: PF00854 POT family [ 15218183 NP_175630.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19438340 CHROM_POS_END:19442342 } -=| MIDDLE_POINT:19440341 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 361 555 1 2202 607 XLS3_Contig233 AT3G28715 H+-transporting two-sector ATPase, putative, similar to SP|P54641 Vacuolar ATP synthase subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit) (V-ATPase 41 KDa accessory protein) {Dictyostelium discoideum} [ 15229475 NP_189513.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10779262 CHROM_POS_END:10781587 } -=| MIDDLE_POINT:10780424 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 94 246 260 1 964 351 XLS3_Contig234 AT2G31190 expressed protein, contains Pfam domain, PF04884: Protein of unknown function, DUF647 [ 18402585 NP_565718.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13298535 CHROM_POS_END:13300758 } -=| MIDDLE_POINT:13299646 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 235 313 1 1026 433 XLS3_Contig235 AT3G05675 expressed protein [ AT3G05675 30679570 NP_850518.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1658431 CHROM_POS_END:1659865 } -=| MIDDLE_POINT:1659148 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.51 50 108 216 1 931 441 XLS3_Contig236 AT1G54560 myosin, putative, similar to myosin GI:433663 from (Arabidopsis thaliana) [ 15221848 NP_175858.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20375316 CHROM_POS_END:20383412 } -=| MIDDLE_POINT:20379364 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.18 83 40 48 1 1072 1529 XLS3_Contig237 AT4G14500 expressed protein, weak similarity to SP|Q9UKL6 Phosphatidylcholine transfer protein (PC-TP) {Homo sapiens} [ 18414239 NP_567433.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8334387 CHROM_POS_END:8337018 } -=| MIDDLE_POINT:8335702 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 62 277 444 1 1636 433 XLS3_Contig238 AT1G34380 5'-3' exonuclease family protein, similar to DNA polymerase type I (Rhodothermus sp. 'ITI 518') gi|4090935|gb|AAC98908 [ 42562521 NP_174698.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12553275 CHROM_POS_END:12554277 } -=| MIDDLE_POINT:12553776 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.35 42 94 219 1 965 264 XLS3_Contig239 AT2G20890 expressed protein [ AT2G20890 18399513 NP_565491.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8994864 CHROM_POS_END:8996266 } -=| MIDDLE_POINT:8995565 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.61 53 132 246 1 891 300 XLS3_Contig240 AT1G55510 2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 beta subunit, putative, strong similarity to branched chain alpha-keto acid dehydrogenase E1 beta subunit (Arabidopsis thaliana) GI:7021286 [ 15222731 NP_175947.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20727148 CHROM_POS_END:20729171 } -=| MIDDLE_POINT:20728159 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 87 295 337 1 1238 352 XLS3_Contig241 AT2G26600 glycosyl hydrolase family 17 protein [ AT2G26600 18401187 NP_565627.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:11323805 CHROM_POS_END:11325293 } -=| MIDDLE_POINT:11324549 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.84 61 91 148 1 1105 388 XLS3_Contig242 AT1G48420 desulfhydrase family, similar to similar to D-cysteine desulfhydrase (EC 4.4.1.15). (Swiss-Prot:P59329) (Escherichia coli O6) [ 30694324 NP_175275.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17900435 CHROM_POS_END:17902471 } -=| MIDDLE_POINT:17901453 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 198 275 1 1017 401 XLS3_Contig243 AT4G17830 peptidase M20/M25/M40 family protein, similar to acetylornithine deacetylase (Acetylornithinase, AO [ 42566909 NP_193517.3 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9915929 CHROM_POS_END:9918062 } -=| MIDDLE_POINT:9916995 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 220 274 1 916 440 XLS3_Contig244 AT2G36890 myb family transcription factor (MYB38), contains Pfam profile: PF00249 myb-like DNA-binding domain [ 15228049 NP_181226.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15492900 CHROM_POS_END:15494324 } -=| MIDDLE_POINT:15493612 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.64 57 132 231 1 953 298 XLS3_Contig245 AT4G10925 F-box family protein, contains Pfam PF00646: F-box domain [ 18413398 NP_567369.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:6702983 CHROM_POS_END:6704279 } -=| MIDDLE_POINT:6703631 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.42 68 79 115 1 839 231 XLS3_Contig246 AT4G38240 alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative, similar to N-acetylglucosaminyltransferase I from Arabidopsis thaliana (gi:5139335) [ 30691786 NP_195537.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17932000 CHROM_POS_END:17935203 } -=| MIDDLE_POINT:17933601 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 222 310 1 1088 444 XLS3_Contig247 AT4G27720 expressed protein, contains Pfam PF05631: Protein of unknown function (DUF791) [ 18417054 NP_567786.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:13831209 CHROM_POS_END:13833527 } -=| MIDDLE_POINT:13832368 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 88 233 262 1 996 460 XLS3_Contig248 AT3G20050 T-complex protein 1 alpha subunit / TCP-1-alpha / chaperonin (CCT1), identical to SWISS-PROT:P28769- T-complex protein 1, alpha subunit (TCP-1-alpha) (Arabidopsis thaliana) [ 15231024 NP_188640.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6998550 CHROM_POS_END:7002272 } -=| MIDDLE_POINT:7000411 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 87 260 298 1 983 545 XLS3_Contig249 AT3G46640 myb family transcription factor, contains Pfam profile: PF00249 myb-like DNA-binding domain [ 15232597 NP_190248.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17194233 CHROM_POS_END:17195204 } -=| MIDDLE_POINT:17194718 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.67 56 147 262 1 976 323 XLS3_Contig250 AT1G11870 seryl-tRNA synthetase, putative / serine--tRNA ligase, putative, similar to PIR|T03949 serine--tRNA ligase (EC 6.1.1.11) serS {Zea mays} [ 30682484 NP_849647.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4003894 CHROM_POS_END:4006555 } -=| MIDDLE_POINT:4005224 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.87 69 161 231 1 949 514 XLS3_Contig251 AT4G36850 PQ-loop repeat family protein / transmembrane family protein, similar to SP|Q10482 Seven transmembrane protein 1 {Schizosaccharomyces pombe} [ 42567473 NP_568009.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17353418 CHROM_POS_END:17355824 } -=| MIDDLE_POINT:17354621 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.63 51 127 246 1 1086 374 XLS3_Contig252 AT3G27090 expressed protein, similar to gda-1 (Pisum sativum) GI:2765418 [ 15232081 NP_189345.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9991257 CHROM_POS_END:9992644 } -=| MIDDLE_POINT:9991950 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 210 299 1 1274 296 XLS3_Contig253 AT5G05850 leucine-rich repeat family protein, contains Pfam PF00560: Leucine Rich Repeat domains [ 15239256 NP_196204.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1762692 CHROM_POS_END:1764610 } -=| MIDDLE_POINT:1763651 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.89 60 168 276 1 975 506 XLS3_Contig254 AT3G02600 phosphatidic acid phosphatase family protein / PAP2 family protein, similar to phosphatidic acid phosphatase (Mus musculus) GI:1487873 [ 18396250 NP_566177.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:551541 CHROM_POS_END:554418 } -=| MIDDLE_POINT:552979 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.8 70 103 146 1 880 364 XLS3_Contig255 AT4G23160 protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain [ 42567050 NP_194047.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12129496 CHROM_POS_END:12134097 } -=| MIDDLE_POINT:12131796 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.54 36 101 278 1 929 1262 XLS3_Contig256 AT3G56200 amino acid transporter family protein, low similarity to N system amino acids transporter NAT-1 (Mus musculus) GI:7406950 [ 15228851 NP_191179.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20861066 CHROM_POS_END:20862758 } -=| MIDDLE_POINT:20861912 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.9 61 165 268 1 924 435 XLS3_Contig257 AT1G47128 cysteine proteinase (RD21A) / thiol protease, identical to SP|P43297 Cysteine proteinase RD21A precursor (EC 3.4.22.-) {Arabidopsis thaliana}, thiol protease RD21A SP:P43297 from (Arabidopsis thaliana) [ 18401614 NP_564497.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17285579 CHROM_POS_END:17288049 } -=| MIDDLE_POINT:17286814 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 182 275 1 916 462 XLS3_Contig258 AT1G03110 transducin family protein / WD-40 repeat family protein, contains 4 WD-40 repeats (PF00400) [ 18379056 NP_563675.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:749359 CHROM_POS_END:751796 } -=| MIDDLE_POINT:750577 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.98 61 179 289 1 982 427 XLS3_Contig259 AT4G13870 Werner Syndrome-like exonuclease (WEX), contains Pfam profile PF01612: 3'-5' exonuclease [ 42572893 NP_974543.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:8023559 CHROM_POS_END:8025538 } -=| MIDDLE_POINT:8024548 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.61 60 86 143 1 1219 288 XLS3_Contig260 AT2G31880 leucine-rich repeat transmembrane protein kinase, putative [ 15225153 NP_180747.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:13561997 CHROM_POS_END:13563922 } -=| MIDDLE_POINT:13562959 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.61 44 138 310 1 956 641 XLS3_Contig261 AT1G69630 F-box family protein, contains F-box domain Pfam:PF00646 [ 15222387 NP_177121.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26195303 CHROM_POS_END:26196837 } -=| MIDDLE_POINT:26196070 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.2 34 73 213 1 942 451 XLS3_Contig262 AT4G38630 26S proteasome regulatory subunit S5A (RPN10), identical to multiubiquitin chain binding protein (MBP1) SP:P55034, GI:1165206 [ 15233973 NP_195575.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18057351 CHROM_POS_END:18059453 } -=| MIDDLE_POINT:18058402 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 209 265 1 918 386 XLS3_Contig263 AT1G44170 aldehyde dehydrogenase, putative (ALDH), similar to aldehyde dehydrogenase ALDH (Craterostigma plantagineum) gi|17065918|emb|CAC84900 [ 15219358 NP_175081.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:16799004 CHROM_POS_END:16802471 } -=| MIDDLE_POINT:16800737 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 193 275 1 1076 484 XLS3_Contig264 AT5G14040 mitochondrial phosphate transporter, identical to mitochondrial phosphate transporter GI:3318617 from (Arabidopsis thaliana) [ 15241291 NP_196908.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4531061 CHROM_POS_END:4532967 } -=| MIDDLE_POINT:4532014 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 218 285 1 916 375 XLS3_Contig265 AT4G36380 cytochrome P450 90C1 (CYP90C1) / rotundifolia3 (ROT3), identical to Cytochrome P450 90C1 (ROTUNDIFOLIA3) (SP:Q9M066) (Arabidopsis thaliana) [ 18419825 NP_568002.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17187976 CHROM_POS_END:17192205 } -=| MIDDLE_POINT:17190090 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 168 252 1 1801 524 XLS3_Contig266 AT1G08280 glycosyl transferase family 29 protein / sialyltransferase family protein, contains Pfam profile: PF00777 sialyltransferase (Glycosyltransferase family 29) [ 15223174 NP_172305.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2608405 CHROM_POS_END:2609601 } -=| MIDDLE_POINT:2609003 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.5 38 84 220 1 1019 398 XLS3_Contig267 AT4G04955 amidohydrolase family protein, similar to SP|P32375 Allantoinase (EC 3.5.2.5) {Saccharomyces cerevisiae} [ 18412757 NP_567276.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2522299 CHROM_POS_END:2525257 } -=| MIDDLE_POINT:2523778 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 273 367 1 1216 506 XLS3_Contig268 AT5G50790 nodulin MtN3 family protein, similar to MtN3 GI:1619602 (root nodule development) from (Medicago truncatula) [ 15241265 NP_199892.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20673687 CHROM_POS_END:20675053 } -=| MIDDLE_POINT:20674370 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.72 60 125 206 1 891 289 XLS3_Contig269 AT5G63870 serine/threonine protein phosphatase (PP7), identical to PP7 (Arabidopsis thaliana) GI:2791900 [ 30697908 NP_851259.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:25578562 CHROM_POS_END:25580134 } -=| MIDDLE_POINT:25579348 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.71 73 118 161 1 903 413 XLS3_Contig270 AT3G50930 AAA-type ATPase family protein, contains Pfam profile: ATPase family PF00004 [ 30693378 NP_190662.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18940798 CHROM_POS_END:18942528 } -=| MIDDLE_POINT:18941663 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.77 48 135 280 1 929 576 XLS3_Contig271 AT5G50130 short-chain dehydrogenase/reductase (SDR) family protein, contains INTERPRO family IPR002198 Short-chain dehydrogenase/reductase (SDR) superfamily [ 18423110 NP_568721.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:20407292 CHROM_POS_END:20410279 } -=| MIDDLE_POINT:20408785 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 218 325 1 1215 339 XLS3_Contig272 AT3G51550 protein kinase family protein, contains protein kinase domain, Pfam:PF00069 [ 15230520 NP_190723.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19128856 CHROM_POS_END:19131543 } -=| MIDDLE_POINT:19130199 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.82 46 171 364 1 1314 895 XLS3_Contig273 AT1G75900 family II extracellular lipase 3 (EXL3), EXL3 (PMID:11431566) [ 15222901 NP_177718.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:28502840 CHROM_POS_END:28504604 } -=| MIDDLE_POINT:28503722 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.82 57 156 273 1 906 364 XLS3_Contig274 AT4G34200 D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putative, similar to phosphoglycerate dehydrogenase, Arabidopsis thaliana, SP:O04130 [ 15235282 NP_195146.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16374045 CHROM_POS_END:16376565 } -=| MIDDLE_POINT:16375305 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 199 272 1 881 603 XLS3_Contig275 AT3G47800 aldose 1-epimerase family protein, similar to ALDOSE 1-EPIMERASE PRECURSOR GB:P05149 (SP|P05149) from (Acinetobacter calcoaceticus) [ 15228261 NP_190364.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17645956 CHROM_POS_END:17647983 } -=| MIDDLE_POINT:17646969 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.85 59 152 257 1 897 358 XLS3_Contig276 AT1G59580 mitogen-activated protein kinase, putative / MAPK, putative (MPK2), identical to mitogen-activated protein kinase homolog 2 (AtMPK2)(Arabidopsis thaliana) SWISS-PROT:Q39022 [ 18406388 NP_564746.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21888186 CHROM_POS_END:21889408 } -=| MIDDLE_POINT:21888797 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 88 200 225 1 1062 376 XLS3_Contig277 AT1G24360 3-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductase, identical to 3-oxoacyl-(acyl-carrier protein) reductase SP:P33207 from (Arabidopsis thaliana) [ 18395461 NP_564216.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8640809 CHROM_POS_END:8643272 } -=| MIDDLE_POINT:8642040 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.83 71 143 199 1 966 319 XLS3_Contig278 AT3G21865 expressed protein [ AT3G21865 42565097 NP_566696.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7701315 CHROM_POS_END:7703225 } -=| MIDDLE_POINT:7702270 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.82 67 164 243 1 1090 283 XLS3_Contig279 AT3G63490 ribosomal protein L1 family protein, ribosomal protein L1, S.oleracea, EMBL:SORPL1 [ 15229443 NP_191908.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:23455244 CHROM_POS_END:23456995 } -=| MIDDLE_POINT:23456119 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 201 285 1 942 346 XLS3_Contig280 AT5G41190 expressed protein, [ AT5G41190 15237579 NP_198935.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16504856 CHROM_POS_END:16507240 } -=| MIDDLE_POINT:16506048 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.98 59 183 306 1 921 602 XLS3_Contig281 AT4G38540 monooxygenase, putative (MO2), identical to GI:3426064 [ AT4G38540 15233923 NP_195566.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18023181 CHROM_POS_END:18024821 } -=| MIDDLE_POINT:18024001 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.64 53 120 226 1 894 407 XLS3_Contig282 AT5G53850 haloacid dehalogenase-like hydrolase family protein, low similarity to enolase-phosphatase E-1 enzyme (Klebsiella oxytoca) GI:401712 [ 42573670 NP_974931.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21878381 CHROM_POS_END:21882043 } -=| MIDDLE_POINT:21880212 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.48 56 97 172 1 1024 507 XLS3_Contig283 AT5G63160 speckle-type POZ protein-related, contains Pfam PF00651 : BTB/POZ domain [ 15242656 NP_201121.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:25350711 CHROM_POS_END:25352625 } -=| MIDDLE_POINT:25351668 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.97 64 179 277 1 917 365 XLS3_Contig284 AT2G44510 p21Cip1-binding protein-related, similar to p21Cip1-binding protein TOK-1beta (GI:7339688) (Homo sapiens) [ 18406554 NP_566018.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18384487 CHROM_POS_END:18386106 } -=| MIDDLE_POINT:18385296 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.53 50 112 221 1 935 326 XLS3_Contig285 AT5G02920 F-box family protein, low similarity to ribosomal RNA apurinic site specific lyase (Triticum aestivum) GI:6505722 [ 18414060 NP_568109.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:680539 CHROM_POS_END:681775 } -=| MIDDLE_POINT:681157 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.13 25 64 249 1 1029 345 XLS3_Contig286 AT2G20420 succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative, identical to SP|O82662 Succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial precursor (EC 6.2.1.4) (Succinyl-CoA synthetase, beta chain) (SCS- beta) {Arabidopsis thaliana} [ 15225353 NP_179632.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8812655 CHROM_POS_END:8814939 } -=| MIDDLE_POINT:8813797 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 87 368 419 1 1528 421 XLS3_Contig287 AT4G10170 synaptobrevin-related family protein, similar to Vesicle-associated membrane protein 722 (AtVAMP722) Synaptobrevin-related protein 1 (SP:P47192) {Arabidopsis thaliana} [ 15234957 NP_192755.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:6344583 CHROM_POS_END:6345347 } -=| MIDDLE_POINT:6344965 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.5 54 101 187 1 916 254 XLS3_Contig288 AT1G56310 3'-5' exonuclease domain-containing protein, contains Pfam profile PF01612: 3'-5' exonuclease [ 15223514 NP_176027.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21086528 CHROM_POS_END:21088965 } -=| MIDDLE_POINT:21087746 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.67 48 126 260 1 927 582 XLS3_Contig289 AT2G32080 PUR alpha-1 protein, identical to PUR alpha-1 GI:5081612 from (Arabidopsis thaliana) [ 18402871 NP_565736.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:13649793 CHROM_POS_END:13651113 } -=| MIDDLE_POINT:13650453 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.98 73 192 263 1 987 296 XLS3_Contig290 AT1G21880 peptidoglycan-binding LysM domain-containing protein, contains Pfam profile PF01476: LysM domain [ 18395044 NP_564153.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7680678 CHROM_POS_END:7682515 } -=| MIDDLE_POINT:7681596 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 199 283 1 993 416 XLS3_Contig291 AT1G71980 protease-associated zinc finger (C3HC4-type RING finger) family protein, identical to ReMembR-H2 protein JR702 (Arabidopsis thaliana) gi|6942149|gb|AAF32326 [ 22330577 NP_177343.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:27101912 CHROM_POS_END:27103543 } -=| MIDDLE_POINT:27102727 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.58 64 76 118 1 904 448 XLS3_Contig292 AT1G23740 oxidoreductase, zinc-binding dehydrogenase family protein, contains Pfam profile PF00107: oxidoreductase, zinc-binding dehydrogenase family [ 15220854 NP_173786.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8398234 CHROM_POS_END:8399645 } -=| MIDDLE_POINT:8398939 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.87 65 180 275 1 864 386 XLS3_Contig293 AT1G04880 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein, low similarity to SP|O15347|HMG4_HUMAN High mobility group protein 4 (HMG-4) (High mobility group protein 2a) (HMG-2a) {Homo sapiens} [ 15220344 NP_171980.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1376105 CHROM_POS_END:1378263 } -=| MIDDLE_POINT:1377184 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.47 41 109 265 1 908 448 XLS3_Contig294 AT5G50700 short-chain dehydrogenase/reductase (SDR) family protein, contains oxidoreductase, short chain dehydrogenase/reductase family domain, Pfam:PF00106 [ 22327700 NP_680418.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20640485 CHROM_POS_END:20642221 } -=| MIDDLE_POINT:20641353 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 61 178 290 1 992 349 XLS3_Contig295 AT3G63000 NPL4 family protein, contains Pfam domain, PF05021: NPL4 family [ 15229360 NP_191859.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:23294811 CHROM_POS_END:23296332 } -=| MIDDLE_POINT:23295571 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.29 69 57 82 1 472 413 XLS3_Contig296 AT3G29670 transferase family protein, similar to anthocyanin 5-aromatic acyltransferase from Gentiana triflora GI:4185599, malonyl CoA:anthocyanin 5-O-glucoside-6'''-O-malonyltransferase from Perilla frutescens GI:17980232, Salvia splendens GI:17980234 [ 15230048 NP_189609.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11530431 CHROM_POS_END:11531786 } -=| MIDDLE_POINT:11531108 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.41 36 108 296 1 909 451 XLS3_Contig297 AT4G31810 enoyl-CoA hydratase/isomerase family protein, similar to CHY1 (gi:8572760) [ 22329062 NP_194909.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15387371 CHROM_POS_END:15390296 } -=| MIDDLE_POINT:15388833 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 63 180 283 1 899 409 XLS3_Contig298 AT3G51860 cation exchanger, putative (CAX3), similar to high affinity calcium antiporter CAX1 (Arabidopsis thaliana) gi|9256741|gb|AAB05913 [ 30693547 NP_190754.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19250435 CHROM_POS_END:19253496 } -=| MIDDLE_POINT:19251965 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 62 199 316 1 971 459 XLS3_Contig299 AT1G31770 ABC transporter family protein, contains Pfam profile: PF00005: ABC transporter [ 18398110 NP_564383.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11375233 CHROM_POS_END:11377625 } -=| MIDDLE_POINT:11376429 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 191 279 1 975 648 XLS3_Contig300 AT3G58970 magnesium transporter CorA-like family protein, contains Pfam profile PF01544: CorA-like Mg2+ transporter protein [ 18411070 NP_567076.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21800636 CHROM_POS_END:21802140 } -=| MIDDLE_POINT:21801388 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.87 64 182 283 1 1066 436 XLS3_Contig301 no_hits_found 0 0 XLS3_Contig302 AT1G54150 zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) [ 18404810 NP_564653.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20219147 CHROM_POS_END:20220970 } -=| MIDDLE_POINT:20220058 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.64 49 128 257 1 968 383 XLS3_Contig303 no_hits_found 0 0 XLS3_Contig304 AT2G36530 enolase, identical to SWISS-PROT:P25696 enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)(2-phospho-D- glycerate hydro-lyase) (Arabidopsis thaliana) [ 15227987 NP_181192.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15328160 CHROM_POS_END:15330865 } -=| MIDDLE_POINT:15329512 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 87 237 270 1 966 444 XLS3_Contig305 AT3G22970 expressed protein, contains Pfam profile PF04720: Protein of unknown function (DUF506) [ 15228917 NP_188937.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:8152599 CHROM_POS_END:8153888 } -=| MIDDLE_POINT:8153243 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.29 57 73 128 1 889 370 XLS3_Contig306 no_hits_found 0 0 XLS3_Contig307 AT4G31340 myosin heavy chain-related, contains weak similarity to Myosin heavy chain, nonmuscle type A (Cellular myosin heavy chain, type A) (Nonmuscle myosin heavy chain-A) (NMMHC-A) (Swiss-Prot:P35579) (Homo sapiens) [ 18417787 NP_567873.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:15205668 CHROM_POS_END:15208956 } -=| MIDDLE_POINT:15207312 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.93 45 173 378 1 1283 437 XLS3_Contig308 AT5G46190 KH domain-containing protein, strong similarity to unknown protein (pir||T04533) [ 15237393 NP_199431.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18740662 CHROM_POS_END:18743061 } -=| MIDDLE_POINT:18741861 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.75 55 149 269 1 930 644 XLS3_Contig309 AT1G01710 acyl-CoA thioesterase family protein, contains Pfam profiles: PF02551 acyl-CoA thioesterase, PF00027 cyclic nucleotide-binding domain [ 30678177 NP_563632.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:262950 CHROM_POS_END:266029 } -=| MIDDLE_POINT:264489 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 172 260 1 889 427 XLS3_Contig310 AT2G19810 zinc finger (CCCH-type) family protein, contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) [ 15224852 NP_179571.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8557501 CHROM_POS_END:8558580 } -=| MIDDLE_POINT:8558040 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.75 53 152 286 1 913 359 XLS3_Contig311 AT3G48560 acetolactate synthase, chloroplast / acetohydroxy-acid synthase (ALS), nearly identical to SP|P17597 Acetolactate synthase, chloroplast precursor (EC 2.2.1.6, formerly EC 4.1.3.18) (Acetohydroxy-acid synthase) (ALS) {Arabidopsis thaliana} [ 15228401 NP_190425.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18012515 CHROM_POS_END:18014527 } -=| MIDDLE_POINT:18013521 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 202 303 1 939 670 XLS3_Contig312 AT1G17140 tropomyosin-related, similar to Tropomyosin 1. (Baker's yeast)(SP:P17536) {Saccharomyces cerevisiae} [ 18394444 NP_564015.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:5856733 CHROM_POS_END:5857854 } -=| MIDDLE_POINT:5857293 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.47 44 118 265 1 901 344 XLS3_Contig313 AT3G09470 expressed protein [ AT3G09470 30680871 NP_187558.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2910674 CHROM_POS_END:2914416 } -=| MIDDLE_POINT:2912545 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.8 64 157 242 1 900 464 XLS3_Contig314 AT3G02150 TCP family transcription factor, putative, similar to transcription factor PCF6 (Oryza sativa (japonica cultivar-group)) GI:20975255 [ 30678498 NP_850501.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:391529 CHROM_POS_END:392596 } -=| MIDDLE_POINT:392062 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.4 68 81 118 1 921 355 XLS3_Contig315 AT1G14000 protein kinase family protein / ankyrin repeat family protein, contains Pfam profiles: PF00069 protein kinase domain, PF00023 ankyrin repeat [ 15223025 NP_172853.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4797603 CHROM_POS_END:4800040 } -=| MIDDLE_POINT:4798821 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 205 254 1 1071 438 XLS3_Contig316 AT5G08560 transducin family protein / WD-40 repeat family protein, contains 7 WD-40 repeats (PF00400) [ 15242311 NP_196473.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2771105 CHROM_POS_END:2773828 } -=| MIDDLE_POINT:2772466 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 56 234 416 1 1488 589 XLS3_Contig317 AT4G14880 cysteine synthase / O-acetylserine (thiol)-lyase / O-acetylserine sulfhydrylase (OAS1), nearly identical to SP|P47998 Cysteine synthase (EC 4.2.99.8) (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) {Arabidopsis thaliana} [ 15233613 NP_193224.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:8518204 CHROM_POS_END:8520045 } -=| MIDDLE_POINT:8519124 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.89 69 148 213 1 948 322 XLS3_Contig318 AT1G64780 ammonium transporter 1, member 2 (AMT1.2), nearly identical to SP|Q9ZPJ8 Ammonium transporter 1, member 2 (AtAMT1 [ 15217741 NP_176658.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:24064684 CHROM_POS_END:24066228 } -=| MIDDLE_POINT:24065456 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 244 304 1 923 514 XLS3_Contig319 AT5G05210 nucleolar matrix protein-related, contains Pfam domain, PF04935: Surfeit locus protein 6 [ 15239036 NP_196140.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1548199 CHROM_POS_END:1549535 } -=| MIDDLE_POINT:1548867 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.42 38 94 247 1 916 386 XLS3_Contig320 AT5G66730 zinc finger (C2H2 type) family protein, contains Pfam domain, PF00096: Zinc finger, C2H2 type [ 15240072 NP_201474.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26659140 CHROM_POS_END:26661109 } -=| MIDDLE_POINT:26660124 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.79 76 133 175 1 928 500 XLS3_Contig321 AT3G48410 hydrolase, alpha/beta fold family protein, low simiilarity to 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (Rhodococcus sp. RHA1) GI:8978311, SP|Q59695|ACOC_PSEPU Dihydrolipoamide acetyltransferase component of acetoin cleaving system (EC 2.3.1.12) (Acetoin dehydrogenase E2 component) {Pseudomonas putida} [ 15228377 NP_190412.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17936771 CHROM_POS_END:17939085 } -=| MIDDLE_POINT:17937928 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.91 56 167 293 1 978 385 XLS3_Contig322 AT1G15520 ABC transporter family protein, similar to ABC1 protein GI:14331118 from (Nicotiana plumbaginifolia) [ 15218218 NP_173005.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5331988 CHROM_POS_END:5338170 } -=| MIDDLE_POINT:5335079 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 60 289 479 1 1437 1423 XLS3_Contig323 AT1G62940 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein, similar to gi:112801 from Petroselinum crispum, GB:AAD40664 from (Solanum tuberosum) (J. Biol. Chem. 266 (13), 8551-8559 (1991)) [ 15221636 NP_176482.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:23314219 CHROM_POS_END:23316412 } -=| MIDDLE_POINT:23315315 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 368 534 1 1795 542 XLS3_Contig324 AT5G48050 expressed protein, low similarity to copia-like polyprotein (Arabidopsis thaliana) GI:13872712 [ 15238877 NP_199616.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19489887 CHROM_POS_END:19490996 } -=| MIDDLE_POINT:19490441 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.3 37 77 206 1 974 369 XLS3_Contig325 AT3G11810 expressed protein [ AT3G11810 15229864 NP_187787.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3727825 CHROM_POS_END:3728871 } -=| MIDDLE_POINT:3728348 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.39 36 116 315 1 946 348 XLS3_Contig326 AT2G22250 aminotransferase class I and II family protein, similar to aspartate aminotransferase from Bacillus stearothermophilus SP|Q59228, Thermus aquaticus SP|O33822 [ 18399915 NP_565529.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9465091 CHROM_POS_END:9467377 } -=| MIDDLE_POINT:9466234 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 191 268 1 924 475 XLS3_Contig327 no_hits_found 0 0 XLS3_Contig328 AT3G05675 expressed protein [ AT3G05675 30679570 NP_850518.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1658431 CHROM_POS_END:1659865 } -=| MIDDLE_POINT:1659148 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.14 31 54 169 1 970 441 XLS3_Contig329 AT1G06620 2-oxoglutarate-dependent dioxygenase, putative, similar to 2A6 (GI:599622) and tomato ethylene synthesis regulatory protein E8 (SP|P10967) [ 30679748 NP_172147.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2025617 CHROM_POS_END:2027093 } -=| MIDDLE_POINT:2026355 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.93 55 159 284 1 904 365 XLS3_Contig330 AT4G21470 riboflavin kinase/FAD synthetase family protein, contains Pfam profiles PF01687: Riboflavin kinase / FAD synthetase, PF00702: haloacid dehalogenase-like hydrolase [ 42567011 NP_193878.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11431295 CHROM_POS_END:11433208 } -=| MIDDLE_POINT:11432251 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.6 50 109 217 1 860 379 XLS3_Contig331 AT3G21070 ATP-NAD kinase family protein, contains Pfam domain, PF01513: ATP-NAD kinase [ 42565070 NP_188744.3 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7380440 CHROM_POS_END:7383880 } -=| MIDDLE_POINT:7382160 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.69 56 97 173 1 819 530 XLS3_Contig332 AT1G34190 no apical meristem (NAM) family protein, contains Pfam PF02365: No apical meristem (NAM) protein [ 18399168 NP_564440.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12451707 CHROM_POS_END:12453892 } -=| MIDDLE_POINT:12452799 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.87 41 198 472 1 1378 557 XLS3_Contig333 AT3G21300 RNA methyltransferase family protein, contains TIGRfam TIGR00479: RNA methyltransferase, TrmA family [ 42565079 NP_188767.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7493660 CHROM_POS_END:7496263 } -=| MIDDLE_POINT:7494961 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.86 58 160 274 1 853 554 XLS3_Contig334 AT3G11340 UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase [ 15229731 NP_187742.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3556734 CHROM_POS_END:3558155 } -=| MIDDLE_POINT:3557444 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.62 46 129 279 1 979 447 XLS3_Contig335 AT5G19220 glucose-1-phosphate adenylyltransferase large subunit 1 (APL1) / ADP-glucose pyrophosphorylase (ADG2), identical to SP|P55229 [ 15239684 NP_197423.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6463933 CHROM_POS_END:6466777 } -=| MIDDLE_POINT:6465355 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 303 374 1 1261 522 XLS3_Contig336 AT5G63110 histone deacetylase, putative, similar to SP|O22446 Histone deacetylase (HD) {Arabidopsis thaliana} [ 15242626 NP_201116.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:25333060 CHROM_POS_END:25335453 } -=| MIDDLE_POINT:25334256 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 218 264 1 920 471 XLS3_Contig337 AT5G45670 GDSL-motif lipase/hydrolase family protein, similar to family II lipases EXL3 GI:15054386, EXL1 GI:15054382, EXL2 GI:15054384 from (Arabidopsis thaliana) [ 15242458 NP_199379.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18545827 CHROM_POS_END:18547391 } -=| MIDDLE_POINT:18546609 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.71 50 125 250 1 820 362 XLS3_Contig338 AT5G44640 glycosyl hydrolase family 1 protein, contains Pfam PF00232 : Glycosyl hydrolase family 1 domain [ 15241543 NP_199277.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18028373 CHROM_POS_END:18029896 } -=| MIDDLE_POINT:18029134 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 46 197 426 1 1330 507 XLS3_Contig339 AT2G22590 glycosyltransferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase [ 18400022 NP_565540.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9600092 CHROM_POS_END:9601504 } -=| MIDDLE_POINT:9600798 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 47 219 457 1 1557 470 XLS3_Contig340 AT4G18210 purine permease family protein, similar to purine permease (Arabidopsis thaliana) GI:7620007, contains Pfam profile PF03151: Domain of unknown function, DUF250 [ 30684325 NP_193555.3 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10076186 CHROM_POS_END:10077506 } -=| MIDDLE_POINT:10076846 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.52 51 94 184 1 1002 390 XLS3_Contig341 AT2G01350 quinolinate phosphoribosyl transferase family protein, contains Pfam profile: PF01729 quinolinate phosphoribosyl transferase, C-terminal domain [ 18379203 NP_565259.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:165331 CHROM_POS_END:167208 } -=| MIDDLE_POINT:166269 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.9 77 109 140 1 922 348 XLS3_Contig342 AT5G62610 basic helix-loop-helix (bHLH) family protein, contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain [ 15241896 NP_201067.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:25150343 CHROM_POS_END:25151826 } -=| MIDDLE_POINT:25151084 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.58 54 127 231 1 1007 281 XLS3_Contig343 AT1G31350 F-box family protein, similar to hypothetical protein GB:AAF24593 GI:6692128 from (Arabidopsis thaliana) [ 15221685 NP_174420.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11221500 CHROM_POS_END:11222687 } -=| MIDDLE_POINT:11222093 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.7 48 130 268 1 836 395 XLS3_Contig344 AT1G15170 MATE efflux family protein, similar to ripening regulated protein DDTFR18 (Lycopersicon esculentum) GI:12231296 [ 15218070 NP_172969.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5220685 CHROM_POS_END:5222751 } -=| MIDDLE_POINT:5221718 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 56 243 429 1 1415 481 XLS3_Contig345 AT1G08980 amidase family protein, similar to component of chloroplast outer membrane translocon Toc64 (Pisum sativum) GI:7453538 [ 18390964 NP_563831.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2884458 CHROM_POS_END:2886433 } -=| MIDDLE_POINT:2885445 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.94 59 176 295 1 911 425 XLS3_Contig346 AT5G12920 expressed protein, contains 3 weak WD-40 repeats (PF00400) [ 15239941 NP_196796.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4077920 CHROM_POS_END:4081418 } -=| MIDDLE_POINT:4079669 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.67 46 141 302 1 1139 442 XLS3_Contig347 AT1G76550 pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative, strong similarity to SP|Q41140 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase alpha subunit (EC 2.7.1.90) (PFP) (PPI-PFK) {Ricinus communis} [ 15223082 NP_177781.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:28727794 CHROM_POS_END:28731823 } -=| MIDDLE_POINT:28729808 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.99 74 178 238 1 856 617 XLS3_Contig348 AT3G26410 expressed protein [ AT3G26410 18404931 NP_566792.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9670745 CHROM_POS_END:9672510 } -=| MIDDLE_POINT:9671627 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 185 260 1 913 477 XLS3_Contig349 AT1G26460 pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat [ 18395911 NP_564247.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9151803 CHROM_POS_END:9154394 } -=| MIDDLE_POINT:9153098 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 60 246 406 1 1266 630 XLS3_Contig350 AT1G04970 lipid-binding serum glycoprotein family protein, low similarity to SP|P17213 Bactericidal permeability-increasing protein precursor (BPI) {Homo sapiens} [ 18390462 NP_563724.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1411215 CHROM_POS_END:1413430 } -=| MIDDLE_POINT:1412322 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.62 50 117 231 1 849 488 XLS3_Contig351 AT5G64430 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein, contains Pfam profile PF00564: PB1 domain [ 15237703 NP_201248.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:25779766 CHROM_POS_END:25781307 } -=| MIDDLE_POINT:25780536 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.63 47 135 284 1 864 513 XLS3_Contig352 AT3G60590 expressed protein [ AT3G60590 42572745 NP_974468.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:22409203 CHROM_POS_END:22410728 } -=| MIDDLE_POINT:22409965 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.56 58 96 163 1 937 404 XLS3_Contig353 no_hits_found 0 0 XLS3_Contig354 AT5G45310 expressed protein [ AT5G45310 18422537 NP_568641.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18376600 CHROM_POS_END:18378023 } -=| MIDDLE_POINT:18377311 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.33 32 86 267 1 912 352 XLS3_Contig355 AT1G19600 pfkB-type carbohydrate kinase family protein, contains Pfam profile: PF00294 pfkB family carbohydrate kinase [ 15223593 NP_173390.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6779076 CHROM_POS_END:6780889 } -=| MIDDLE_POINT:6779982 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.93 62 165 265 1 978 355 XLS3_Contig356 AT3G29270 expressed protein [ AT3G29270 15228658 NP_189573.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:11236563 CHROM_POS_END:11237354 } -=| MIDDLE_POINT:11236958 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.76 59 144 244 1 1205 263 XLS3_Contig357 AT5G04980 endonuclease/exonuclease/phosphatase family protein, contains similarity to inositol polyphosphate 5-phosphatase I (GI:10444261) and II (GI:10444263) (Arabidopsis thaliana) [ 30680735 NP_196117.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1468576 CHROM_POS_END:1470483 } -=| MIDDLE_POINT:1469529 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.68 47 138 288 1 1203 437 XLS3_Contig358 AT1G17370 oligouridylate-binding protein, putative, similar to oligouridylate binding protein (Nicotiana plumbaginifolia) GI:6996560 [ 18394471 NP_564018.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5951835 CHROM_POS_END:5954818 } -=| MIDDLE_POINT:5953326 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 305 364 1 1199 419 XLS3_Contig359 AT5G53140 protein phosphatase 2C, putative / PP2C, putative [ AT5G53140 18423476 NP_568786.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21566454 CHROM_POS_END:21569358 } -=| MIDDLE_POINT:21567906 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.75 61 146 238 1 981 420 XLS3_Contig360 AT5G12380 annexin, putative, similar to annexin (Fragaria x ananassa) GI:6010777, annexin p33 (Zea mays) GI:6272285 [ 22326753 NP_568271.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4009224 CHROM_POS_END:4010688 } -=| MIDDLE_POINT:4009956 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.8 52 144 275 1 918 316 XLS3_Contig361 AT5G51710 K+ efflux antiporter, putative (KEA5), Monovalent cation:proton antiporter family 2 (CPA2 family) member, PMID:11500563 [ 18423310 NP_568763.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21021792 CHROM_POS_END:21025806 } -=| MIDDLE_POINT:21023799 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 84 179 212 1 1264 568 XLS3_Contig362 AT4G21960 peroxidase 42 (PER42) (P42) (PRXR1), identical to SP|Q9SB81 Peroxidase 42 precursor (EC 1.11.1.7) (Atperox P42) (PRXR1) (ATP1a/ATP1b) {Arabidopsis thaliana} [ 18415810 NP_567641.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11646625 CHROM_POS_END:11648324 } -=| MIDDLE_POINT:11647474 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 260 331 1 1105 330 XLS3_Contig363 AT1G70280 NHL repeat-containing protein, contains Pfam profile PF01436: NHL repeat [ 30698020 NP_177185.3 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:26469749 CHROM_POS_END:26472134 } -=| MIDDLE_POINT:26470941 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.99 67 183 270 1 1089 509 XLS3_Contig364 no_hits_found 0 0 XLS3_Contig365 AT5G64440 amidase family protein, low similarity to enantiomerase-selective amidase (Rhodococcus sp.) GI:152052 [ 15237704 NP_201249.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:25783455 CHROM_POS_END:25787486 } -=| MIDDLE_POINT:25785470 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 191 278 1 836 607 XLS3_Contig366 AT3G33520 actin-related protein 6 (ARP6), nearly identical to actin-related protein 6 (ARP6) (Arabidopsis thaliana) GI:21427467 [ 18406999 NP_566861.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14104777 CHROM_POS_END:14106462 } -=| MIDDLE_POINT:14105619 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 62 198 318 1 970 421 XLS3_Contig367 AT1G53700 protein kinase, putative, similar to cucumber protein kinase CsPK3 (Cucumis sativus) gi|7416109|dbj|BAA93704 [ 15220907 NP_175774.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20052272 CHROM_POS_END:20053702 } -=| MIDDLE_POINT:20052987 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.9 67 174 257 1 868 476 XLS3_Contig368 AT1G27980 pyridoxal-dependent decarboxylase family protein, similar to sphingosine-1-phosphate lyase (Homo sapiens) GI:10129683 [ 15217780 NP_174119.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9748799 CHROM_POS_END:9752605 } -=| MIDDLE_POINT:9750702 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 193 267 1 1079 544 XLS3_Contig369 AT3G13160 pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat [ 18399887 NP_566445.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4230001 CHROM_POS_END:4231185 } -=| MIDDLE_POINT:4230593 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.82 51 145 283 1 968 394 XLS3_Contig370 AT2G21950 SKP1 interacting partner 6 (SKIP6), identical to SKP1 interacting partner 6 GI:10716957 from (Arabidopsis thaliana) [ 18399840 NP_565522.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9360606 CHROM_POS_END:9361724 } -=| MIDDLE_POINT:9361165 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.8 52 150 286 1 923 372 XLS3_Contig371 AT5G20280 sucrose-phosphate synthase, putative, similar to sucrose-phosphate synthase (EC 2.4.1.14) isoform 1 - Citrus unshiu, EMBL:AB005023 [ 15241313 NP_197528.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6844996 CHROM_POS_END:6849999 } -=| MIDDLE_POINT:6847497 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.98 60 173 286 1 1550 1043 XLS3_Contig372 AT5G10490 similar to mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein [Arabidopsis thaliana] (TAIR:At1g58200.2) [ 79510333 NP_568230.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3300377 CHROM_POS_END:3304006 } -=| MIDDLE_POINT:3302191 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.71 52 144 273 1 973 673 XLS3_Contig373 AT1G09830 phosphoribosylamine--glycine ligase (PUR2), Identical to phosphoribosylamine--glycine ligase, chloroplast (precursor) SP:P52420 from (Arabidopsis thaliana) [ 15218286 NP_172454.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3192785 CHROM_POS_END:3194938 } -=| MIDDLE_POINT:3193861 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.95 77 172 221 1 936 532 XLS3_Contig374 AT4G01100 mitochondrial substrate carrier family protein, contains Pfam profile: PF00153 mitochondrial carrier protein [ 15234063 NP_192019.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:477411 CHROM_POS_END:479590 } -=| MIDDLE_POINT:478500 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 210 267 1 907 352 XLS3_Contig375 no_hits_found 0 0 XLS3_Contig376 AT2G39220 patatin family protein, similar to patatin-like latex allergen (Hevea brasiliensis)(PMID:10589016) [ 15225054 NP_181455.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16382133 CHROM_POS_END:16383741 } -=| MIDDLE_POINT:16382937 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 63 193 304 1 1285 499 XLS3_Contig377 no_hits_found 0 0 XLS3_Contig378 AT1G16860 merozoite surface protein-related, contains weak similarity to merozoite surface protein (Plasmodium falciparum) gi|12043655|gb|AAG47601 [ 18394411 NP_564009.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5768273 CHROM_POS_END:5770176 } -=| MIDDLE_POINT:5769224 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 334 462 1 1620 474 XLS3_Contig379 AT4G18710 shaggy-related protein kinase eta / ASK-eta (ASK7), identical to shaggy-related protein kinase eta (ASK-eta) (Arabidopsis thaliana) SWISS-PROT:Q39011 [ 15233984 NP_193606.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10296485 CHROM_POS_END:10298924 } -=| MIDDLE_POINT:10297704 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 88 258 290 1 997 380 XLS3_Contig380 AT5G17520 root cap 1 (RCP1), identical to GI:6137138 [ AT5G17520 18418329 NP_568349.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5772798 CHROM_POS_END:5775233 } -=| MIDDLE_POINT:5774015 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.67 70 111 158 1 922 415 XLS3_Contig381 AT5G03070 armadillo/beta-catenin repeat family protein, contains Pfam profile: PF00514 armadillo/beta-catenin-like repeat [ 15242618 NP_195927.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:718467 CHROM_POS_END:721394 } -=| MIDDLE_POINT:719930 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 204 287 1 947 483 XLS3_Contig382 AT5G42350 kelch repeat-containing F-box family protein, contains Pfam profiles PF01344: Kelch motif, PF00646: F-box domain [ 15238934 NP_199050.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16949334 CHROM_POS_END:16951025 } -=| MIDDLE_POINT:16950179 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.43 48 93 191 1 903 563 XLS3_Contig383 AT1G12990 glycosyl transferase family 17 protein, low similarity to beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144) from Mus musculus (SP|Q10470), Rattus norvegicus (SP|Q02527), Homo sapiens (SP|Q09327) [ 30683061 NP_172759.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4433971 CHROM_POS_END:4435550 } -=| MIDDLE_POINT:4434760 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 286 380 1 1402 392 XLS3_Contig384 AT4G02060 prolifera protein (PRL) / DNA replication licensing factor Mcm7 (MCM7), identical to DNA replication licensing factor Mcm7 SP|P43299 PROLIFERA protein {Arabidopsis thaliana} [ 15235220 NP_192115.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:901484 CHROM_POS_END:905297 } -=| MIDDLE_POINT:903390 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 87 405 464 1 1394 716 XLS3_Contig385 AT3G63220 kelch repeat-containing F-box family protein, contains Pfam profiles PF01344: Kelch motif, PF00646: F-box domain [ 42572771 NP_974481.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:23368515 CHROM_POS_END:23369573 } -=| MIDDLE_POINT:23369044 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.96 71 158 220 1 964 352 XLS3_Contig386 AT1G55810 uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative, similar to SP|O65583 Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase) {Arabidopsis thaliana} [ 15222778 NP_175977.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:20864939 CHROM_POS_END:20867669 } -=| MIDDLE_POINT:20866304 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 391 474 1 1800 466 XLS3_Contig387 AT3G01480 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative, similar to peptidyl-prolyl cis-trans isomerase, chloroplast precursor (40 kDa thylakoid lumen PPIase, 40 kDa thylakoid lumen rotamase) (Spinacia oleracea) SWISS-PROT:O49939 [ 15232123 NP_186797.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:188576 CHROM_POS_END:190681 } -=| MIDDLE_POINT:189628 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.83 69 153 220 1 937 437 XLS3_Contig388 AT1G74470 geranylgeranyl reductase, identical to geranylgeranyl reductase GB:Y14044 (Arabidopsis thaliana) (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15 [ 15221261 NP_177587.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:27994909 CHROM_POS_END:27996506 } -=| MIDDLE_POINT:27995707 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 199 285 1 901 467 XLS3_Contig389 AT1G56600 galactinol synthase, putative, similar to galactinol synthase, isoform GolS-1 GI:5608497 from (Ajuga reptans) [ 15223567 NP_176053.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21211285 CHROM_POS_END:21212956 } -=| MIDDLE_POINT:21212120 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 193 238 1 890 335 XLS3_Contig390 AT3G56860 UBP1 interacting protein 2a (UBA2a), identical to UBP1 interacting protein 2a (Arabidopsis thaliana) GI:19682816 [ 30694529 NP_850711.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21061687 CHROM_POS_END:21063123 } -=| MIDDLE_POINT:21062405 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.68 47 134 284 1 964 478 XLS3_Contig391 AT3G23990 chaperonin (CPN60) (HSP60), identical to SWISS-PROT:P29197- chaperonin CPN60, mitochondrial precursor (HSP60) (Arabidopsis thaliana) [ 15229559 NP_189041.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8669020 CHROM_POS_END:8672285 } -=| MIDDLE_POINT:8670652 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 87 268 305 1 1072 577 XLS3_Contig392 AT5G63180 pectate lyase family protein, similar to pectate lyase GP:14289169 from (Salix gilgiana) [ 18424677 NP_568967.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:25358332 CHROM_POS_END:25360339 } -=| MIDDLE_POINT:25359335 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 200 273 1 887 432 XLS3_Contig393 AT1G61730 DNA-binding storekeeper protein-related, contains Pfam profile: PF04504 protein of unknown function, DUF573 [ 18407307 NP_564784.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:22797112 CHROM_POS_END:22798242 } -=| MIDDLE_POINT:22797677 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.25 28 97 344 1 1108 376 XLS3_Contig394 AT5G26680 endonuclease, putative, similar to Swiss-Prot:P39748 FLAP endonuclease-1 (Maturation factor 1) (MF1) (Homo sapiens) [ 42570539 NP_850877.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9311885 CHROM_POS_END:9315461 } -=| MIDDLE_POINT:9313673 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 87 227 259 1 884 453 XLS3_Contig395 AT5G56340 zinc finger (C3HC4-type RING finger) family protein, contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) [ 15241188 NP_200445.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22835480 CHROM_POS_END:22836670 } -=| MIDDLE_POINT:22836075 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.87 53 170 318 1 1200 396 XLS3_Contig396 AT2G39840 serine/threonine protein phosphatase PP1 isozyme 4 (TOPP4) / phosphoprotein phosphatase 1, identical to SP|P48484 Serine/threonine protein phosphatase PP1 isozyme 4 (EC 3.1.3.16) {Arabidopsis thaliana}, phosphoprotein phosphatase 1 GI:166801 (Arabidopsis thaliana) [ 15225576 NP_181514.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16634508 CHROM_POS_END:16635867 } -=| MIDDLE_POINT:16635187 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 209 251 1 919 321 XLS3_Contig397 AT1G74320 choline kinase, putative, similar to GmCK2p choline kinase gi|1438881|gb|AAC49375 [ 22330627 NP_177572.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:27944853 CHROM_POS_END:27946564 } -=| MIDDLE_POINT:27945708 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.91 67 160 237 1 938 350 XLS3_Contig398 AT1G63180 UDP-glucose 4-epimerase, putative / UDP-galactose 4-epimerase, putative / Galactowaldenase, putative, strong similarity to SP|Q42605 (GI:1143392) from (Arabidopsis thaliana) (Arch. Biochem. Biophys. 327 (1), 27-34 (1996)) [ 18407751 NP_564811.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:23431224 CHROM_POS_END:23433049 } -=| MIDDLE_POINT:23432136 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 238 295 1 1041 351 XLS3_Contig399 AT2G31740 expressed protein [ AT2G31740 30685043 NP_850171.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13498130 CHROM_POS_END:13502086 } -=| MIDDLE_POINT:13500108 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.87 64 157 242 1 823 760 XLS3_Contig400 AT3G12050 Aha1 domain-containing protein, contains Pfam PF05146: Aha1 domain [ 18399461 NP_566410.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:3839295 CHROM_POS_END:3841309 } -=| MIDDLE_POINT:3840302 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 257 361 1 1419 360 XLS3_Contig401 AT5G62460 zinc finger (C3HC4-type RING finger) family protein, contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) [ 18424590 NP_568953.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:25092771 CHROM_POS_END:25094298 } -=| MIDDLE_POINT:25093534 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.83 61 154 249 1 1068 307 XLS3_Contig402 AT2G19450 diacylglycerol O-acyltransferase / acyl CoA:diacylglycerol acyltransferase (DGAT), identical to gi:5050913, gi:6625553 [ 15224779 NP_179535.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8433518 CHROM_POS_END:8436537 } -=| MIDDLE_POINT:8435027 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 230 328 1 1412 520 XLS3_Contig403 AT1G28960 MutT/nudix family protein, similar to coenzyme A diphosphatase (Mus musculus) GI:12746410 [ 18396900 NP_564316.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:10110121 CHROM_POS_END:10111593 } -=| MIDDLE_POINT:10110857 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.62 57 130 227 1 905 293 XLS3_Contig404 AT4G08960 phosphotyrosyl phosphatase activator (PTPA) family protein, similar to Protein phosphatase 2A, regulatory subunit B' (PP2A, subunit B', PR53 isoform) (Phosphotyrosyl phosphatase activator) (PTPA) (Swiss-Prot:Q28717) (Oryctolagus cuniculus) [ 18413175 NP_567342.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5746323 CHROM_POS_END:5747991 } -=| MIDDLE_POINT:5747157 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 209 286 1 949 392 XLS3_Contig405 no_hits_found 0 0 XLS3_Contig406 AT1G25580 no apical meristem (NAM) family protein, contains Pfam PF02365: No apical meristem (NAM) domain [ 30689293 NP_564238.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8997051 CHROM_POS_END:8999587 } -=| MIDDLE_POINT:8998319 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 180 262 1 897 449 XLS3_Contig407 AT5G15390 tRNA/rRNA methyltransferase (SpoU) family protein, similar to SP|P19396 tRNA (Guanosine-2'-O-)-methyltransferase (EC 2.1.1.34) {Escherichia coli O157:H7} [ 15242287 NP_197043.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4995336 CHROM_POS_END:4997258 } -=| MIDDLE_POINT:4996297 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.65 49 141 283 1 938 350 XLS3_Contig408 AT4G31430 expressed protein [ AT4G31430 42573113 NP_974653.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:15248516 CHROM_POS_END:15252210 } -=| MIDDLE_POINT:15250363 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.3 39 94 240 1 892 574 XLS3_Contig409 AT1G54320 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein, Similar to GI:11994416 [ 18404877 NP_564656.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20279399 CHROM_POS_END:20281460 } -=| MIDDLE_POINT:20280429 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 248 344 1 1475 349 XLS3_Contig410 AT2G45970 cytochrome P450, putative [ AT2G45970 15225914 NP_182121.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18919621 CHROM_POS_END:18921234 } -=| MIDDLE_POINT:18920427 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 190 242 1 992 537 XLS3_Contig411 AT5G59590 UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase [ 15238467 NP_200767.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:24026378 CHROM_POS_END:24027811 } -=| MIDDLE_POINT:24027094 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.45 40 74 184 1 912 449 XLS3_Contig412 AT1G17370 oligouridylate-binding protein, putative, similar to oligouridylate binding protein (Nicotiana plumbaginifolia) GI:6996560 [ 18394471 NP_564018.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5951835 CHROM_POS_END:5954818 } -=| MIDDLE_POINT:5953326 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 300 418 1 1508 419 XLS3_Contig413 AT2G23910 cinnamoyl-CoA reductase-related, similar to cinnamoyl-CoA reductase from Pinus taeda (GI:17978649), Saccharum officinarum (GI:3341511) [ 18400407 NP_565557.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10184982 CHROM_POS_END:10186869 } -=| MIDDLE_POINT:10185925 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.64 45 134 297 1 1310 304 XLS3_Contig414 AT5G56780 expressed protein, contains similarity to transcription repressor [ 15241932 NP_200489.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:22981610 CHROM_POS_END:22983467 } -=| MIDDLE_POINT:22982538 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.62 44 142 319 1 1023 488 XLS3_Contig415 AT5G16150 hexose transporter, putative, strong similarity to hexose transporter (Arabidopsis thaliana) GI:8347250 [ 18417892 NP_568328.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:5272907 CHROM_POS_END:5275681 } -=| MIDDLE_POINT:5274294 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 193 251 1 874 546 XLS3_Contig416 AT2G25520 phosphate translocator-related, low similarity to SP|P52178 Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor (CTPT) {Brassica oleracea}, phosphoenolpyruvate/phosphate translocator precursor (Mesembryanthemum crystallinum) GI:9295275 [ 15224742 NP_180122.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10868028 CHROM_POS_END:10869071 } -=| MIDDLE_POINT:10868549 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 188 221 1 848 347 XLS3_Contig417 AT4G05150 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein, various predicted proteins contains Pfam profile PF00564: PB1 domain [ 18412822 NP_567290.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2660337 CHROM_POS_END:2662673 } -=| MIDDLE_POINT:2661505 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.68 55 163 296 1 944 477 XLS3_Contig418 AT2G22780 malate dehydrogenase, glyoxysomal, putative, strong similarity to glyoxysomal malate dehydrogenase (EC 1.1.1.37) SP|P19446 {Citrullus lanatus}, SP|P46488 {Cucumis sativus}, (Medicago sativa) GI:2827078, SP|Q42972 {Oryza sativa}, SP|Q9ZP05 {Arabidopsis thaliana}, SP|P37228 {Glycine max} [ 15227752 NP_179863.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9697075 CHROM_POS_END:9699003 } -=| MIDDLE_POINT:9698039 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 254 298 1 978 354 XLS3_Contig419 AT1G25350 glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative, similar to tRNA-glutamine synthetase GI:2995454 from (Lupinus luteus) [ 22329783 NP_173906.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8889267 CHROM_POS_END:8894192 } -=| MIDDLE_POINT:8891729 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 348 418 1 1279 795 XLS3_Contig420 AT3G52940 C-14 sterol reductase / delta(14)-sterol reductase [ AT3G52940 18409727 NP_566975.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:19641347 CHROM_POS_END:19644090 } -=| MIDDLE_POINT:19642718 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 254 337 1 1083 369 XLS3_Contig421 AT1G16870 mitochondrial 28S ribosomal protein S29-related, contains weak similarity to Swiss-Prot:P51398 mitochondrial 28S ribosomal protein S29 (MRP-S29, Death-associated protein 3, DAP-3) (Homo sapiens) [ 15219396 NP_173131.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5770957 CHROM_POS_END:5773150 } -=| MIDDLE_POINT:5772053 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.76 54 158 289 1 888 480 XLS3_Contig422 AT5G18170 glutamate dehydrogenase 1 (GDH1), identical to glutamate dehydrogenase 1 (GDH 1) (Arabidopsis thaliana) SWISS-PROT:Q43314 [ 15238762 NP_197318.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6006174 CHROM_POS_END:6008250 } -=| MIDDLE_POINT:6007212 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 88 365 411 1 1575 411 XLS3_Contig423 AT3G12120 omega-6 fatty acid desaturase, endoplasmic reticulum (FAD2) / delta-12 desaturase, identical to omega-6 fatty acid desaturase, endoplasmic reticulum (FAD2) SP:P46313 (Arabidopsis thaliana (Mouse-ear cress)) (Plant Cell 6:147-158(1994)) [ 15229956 NP_187819.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3860598 CHROM_POS_END:3861749 } -=| MIDDLE_POINT:3861173 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.92 56 156 277 1 924 383 XLS3_Contig424 AT1G68530 very-long-chain fatty acid condensing enzyme (CUT1), identical to very-long-chain fatty acid condensing enzyme (CUT1) GB:AF129511 (required for cuticular wax biosynthesis and pollen fertility: Millar,A.A., et al., Plant Cell (1999)) [ 15221431 NP_177020.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:25716544 CHROM_POS_END:25718396 } -=| MIDDLE_POINT:25717470 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.81 57 91 159 1 896 497 XLS3_Contig425 AT5G46800 mitochondrial carnitine/acyl carrier, putative / a bout de souffle (BOU) / CAC-like protein, identical to SP|Q93XM7 Mitochondrial carnitine/acylcarnitine carrier-like protein (A BOUT DE SOUFFLE) (Carnitine/acylcarnitine translocase-like protein) (CAC-like protein) {Arabidopsis thaliana} [ 18422718 NP_568670.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19006006 CHROM_POS_END:19007037 } -=| MIDDLE_POINT:19006521 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.58 80 110 137 1 921 300 XLS3_Contig426 AT3G25670 leucine-rich repeat family protein, contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611 [ 15230865 NP_189195.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9345769 CHROM_POS_END:9347538 } -=| MIDDLE_POINT:9346653 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.48 66 87 131 1 924 475 XLS3_Contig427 AT5G17790 zinc finger (Ran-binding) family protein, contains Pfam domain, PF00641: Zn-finger in Ran binding protein and others [ 15238027 NP_197281.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5869812 CHROM_POS_END:5872673 } -=| MIDDLE_POINT:5871242 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.17 38 58 150 1 804 758 XLS3_Contig428 AT3G61880 cytochrome P450, putative, similar to cytochrome p450 SP:O48927 from (Arabidopsis thaliana) [ 15228624 NP_191747.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:22917089 CHROM_POS_END:22918865 } -=| MIDDLE_POINT:22917977 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 308 480 1 1383 534 XLS3_Contig429 AT1G32120 expressed protein, contains Pfam profile PF04819: Family of unknown function (DUF716) (Plant viral-response family) [ 15222573 NP_174491.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11552906 CHROM_POS_END:11558588 } -=| MIDDLE_POINT:11555747 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.67 37 162 436 1 1564 1206 XLS3_Contig430 AT1G09660 KH domain-containing quaking protein, putative, similar to GB:AAC67357 [ 22329449 NP_172437.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:3128034 CHROM_POS_END:3130793 } -=| MIDDLE_POINT:3129413 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.89 62 168 270 1 1070 298 XLS3_Contig431 AT3G05900 neurofilament protein-related, similar to NF-180 (GI:632549) (Petromyzon marinus) similar to Neurofilament triplet H protein (200 kDa neurofilament protein) (Neurofilament heavy polypeptide) (NF-H) (Swiss-Prot:P12036) (Homo sapiens) [ 30679640 NP_187241.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1761414 CHROM_POS_END:1763860 } -=| MIDDLE_POINT:1762637 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.3 27 137 498 1 1647 673 XLS3_Contig432 AT4G11820 hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase, identical to Hydroxymethylglutaryl-CoA synthase (EC 4.1.3.5) (HMG-CoA synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) (Swiss-Prot:P54873) (Arabidopsis thaliana) [ 15234313 NP_192919.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7109118 CHROM_POS_END:7111895 } -=| MIDDLE_POINT:7110506 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 232 284 1 1017 461 XLS3_Contig433 no_hits_found 0 0 XLS3_Contig434 AT1G32400 senescence-associated family protein, contains Pfam profile PF00335: Tetraspanin family [ 18398417 NP_564399.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:11689373 CHROM_POS_END:11690853 } -=| MIDDLE_POINT:11690113 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 194 281 1 1216 280 XLS3_Contig435 AT1G70770 expressed protein [ AT1G70770 15223242 NP_177234.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26692284 CHROM_POS_END:26694847 } -=| MIDDLE_POINT:26693565 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.48 45 106 231 1 993 610 XLS3_Contig436 AT3G46550 fasciclin-like arabinogalactan family protein, similar to fasciclin-like arabinogalactan protein FLA8 (Arabidopsis thaliana) gi|10880493|gb|AAG24276 [ 15231453 NP_190239.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17147597 CHROM_POS_END:17148859 } -=| MIDDLE_POINT:17148228 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.82 52 169 325 1 1038 420 XLS3_Contig437 AT3G58010 expressed protein [ AT3G58010 15230933 NP_191360.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21486926 CHROM_POS_END:21488440 } -=| MIDDLE_POINT:21487683 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.73 56 139 244 1 964 308 XLS3_Contig438 AT1G76810 eukaryotic translation initiation factor 2 family protein / eIF-2 family protein, similar to IF2 protein (Drosophila melanogaster) GI:7108770 [ 42563275 NP_177807.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:28836260 CHROM_POS_END:28841204 } -=| MIDDLE_POINT:28838732 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.41 46 117 249 1 957 1294 XLS3_Contig439 AT2G31390 pfkB-type carbohydrate kinase family protein, contains Pfam profile: PF00294 pfkB family carbohydrate kinase [ 15224669 NP_180697.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13390712 CHROM_POS_END:13393193 } -=| MIDDLE_POINT:13391952 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 270 325 1 1028 325 XLS3_Contig440 AT4G13360 similar to enoyl-CoA hydratase/isomerase family protein [Arabidopsis thaliana] (TAIR:At3g24360.1) [ 79473201 NP_193072.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7775129 CHROM_POS_END:7777697 } -=| MIDDLE_POINT:7776413 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 212 297 1 963 421 XLS3_Contig441 AT1G34630 expressed protein [ AT1G34630 22329938 NP_174722.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12685295 CHROM_POS_END:12687413 } -=| MIDDLE_POINT:12686354 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.62 59 136 230 1 746 481 XLS3_Contig442 AT1G01500 expressed protein, identical to cDNA unknown protein GI:1922247 embY10087.1 [ 18378846 NP_563628.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:185260 CHROM_POS_END:186573 } -=| MIDDLE_POINT:185916 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.53 54 111 204 1 855 327 XLS3_Contig443 AT4G23160 protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain [ 42567050 NP_194047.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12129496 CHROM_POS_END:12134097 } -=| MIDDLE_POINT:12131796 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.87 36 171 470 1 1635 1262 XLS3_Contig444 no_hits_found 0 0 XLS3_Contig445 no_hits_found 0 0 XLS3_Contig446 AT2G03090 expansin, putative (EXP15), identical to SWISS-PROT:O80622 alpha-expansin 15 precursor (At-EXP15)(Arabidopsis thaliana) [ 22325441 NP_178409.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:917360 CHROM_POS_END:918553 } -=| MIDDLE_POINT:917956 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 197 251 1 913 253 XLS3_Contig447 AT5G40870 uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative, similar to SP|O65583 Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase) {Arabidopsis thaliana} [ 15237512 NP_198903.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16392249 CHROM_POS_END:16395612 } -=| MIDDLE_POINT:16393930 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 231 292 1 888 486 XLS3_Contig448 AT3G02650 pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat [ 15232945 NP_186914.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:566278 CHROM_POS_END:569872 } -=| MIDDLE_POINT:568075 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.18 24 60 244 1 903 1077 XLS3_Contig449 AT2G45440 dihydrodipicolinate synthase 2 (DHDPS2), identical to dihydrodipicolinate synthase 2 (DHDPS2) (Arabidopsis thaliana) GI:11066382 [ 15225477 NP_182068.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18738368 CHROM_POS_END:18739941 } -=| MIDDLE_POINT:18739154 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.97 86 160 186 1 922 365 XLS3_Contig450 AT1G02910 tetratricopeptide repeat (TPR)-containing protein, contains Pfam profile PF00515: TPR Domain [ 15218638 NP_171790.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:655749 CHROM_POS_END:658125 } -=| MIDDLE_POINT:656937 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 211 304 1 947 453 XLS3_Contig451 AT3G03310 lecithin:cholesterol acyltransferase family protein [ AT3G03310 18396510 NP_566201.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:778774 CHROM_POS_END:781495 } -=| MIDDLE_POINT:780134 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 171 242 1 868 447 XLS3_Contig452 AT5G20270 expressed protein, contains Pfam domain, PF03006: Uncharacterised protein family (Hly-III / UPF0073) [ 15241302 NP_197527.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6841027 CHROM_POS_END:6842658 } -=| MIDDLE_POINT:6841842 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.67 51 123 237 1 973 332 XLS3_Contig453 AT5G60620 phospholipid/glycerol acyltransferase family protein, contains Pfam PF01553: Acyltransferase [ 18424377 NP_568925.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:24384492 CHROM_POS_END:24386873 } -=| MIDDLE_POINT:24385682 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 84 253 299 1 932 376 XLS3_Contig454 AT5G15900 expressed protein, several hypothetical proteins - Arabidopsis thaliana [ 15237213 NP_197094.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5189527 CHROM_POS_END:5192073 } -=| MIDDLE_POINT:5190800 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.91 54 148 270 1 931 426 XLS3_Contig455 AT2G46495 zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) [ 30690409 NP_850456.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19087326 CHROM_POS_END:19092776 } -=| MIDDLE_POINT:19090051 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.28 31 78 249 1 842 878 XLS3_Contig456 AT4G18880 heat shock transcription factor 21 (HSF21), identical to heat shock transcription factor 21 (Arabidopsis thaliana) GI:3399765 [ 15234053 NP_193623.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:10347780 CHROM_POS_END:10349062 } -=| MIDDLE_POINT:10348421 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.59 53 111 206 1 899 401 XLS3_Contig457 AT4G39210 glucose-1-phosphate adenylyltransferase large subunit 3 (APL3) / ADP-glucose pyrophosphorylase, identical to SP|P55231 [ 15234972 NP_195632.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18260326 CHROM_POS_END:18263175 } -=| MIDDLE_POINT:18261750 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.59 74 109 147 1 920 521 XLS3_Contig458 AT5G24870 zinc finger (C3HC4-type RING finger) family protein, similar to Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) [ 30689641 NP_568462.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:8545011 CHROM_POS_END:8546926 } -=| MIDDLE_POINT:8545968 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.25 41 76 184 1 936 520 XLS3_Contig459 AT5G39250 F-box family protein, [ AT5G39250 15241675 NP_198741.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15742088 CHROM_POS_END:15742846 } -=| MIDDLE_POINT:15742467 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.89 59 150 252 1 1369 252 XLS3_Contig460 AT2G45050 zinc finger (GATA type) family protein, identical to cDNA GATA transcription factor 2 GI:2959731 [ 15225399 NP_182031.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18590033 CHROM_POS_END:18590920 } -=| MIDDLE_POINT:18590476 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.66 51 138 269 1 955 264 XLS3_Contig461 AT5G65470 expressed protein, contains Pfam PF03138: Plant protein family. The function of this family of plant proteins is unknown [ 22328073 NP_201350.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:26189658 CHROM_POS_END:26192130 } -=| MIDDLE_POINT:26190894 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 260 336 1 1010 504 XLS3_Contig462 AT2G14520 CBS domain-containing protein, contains Pfam profiles PF00571: CBS domain, PF01595: Domain of unknown function [ 42569036 NP_179058.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6189444 CHROM_POS_END:6191730 } -=| MIDDLE_POINT:6190587 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 84 239 282 1 1183 423 XLS3_Contig463 AT5G48300 glucose-1-phosphate adenylyltransferase small subunit 1 (APS1) / ADP-glucose pyrophosphorylase (ADG1), identical to SP|P55228 [ 15238933 NP_199641.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19587552 CHROM_POS_END:19589783 } -=| MIDDLE_POINT:19588667 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 84 395 470 1 1460 520 XLS3_Contig464 AT1G21870 glucose-6-phosphate/phosphate translocator-related, similar to glucose 6 phosphate/phosphate translocators from Pisum sativum) GI:2997591, (Mesembryanthemum crystallinum) GI:9295277, (Solanum tuberosum) GI:2997593 [ 15219121 NP_173605.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7678197 CHROM_POS_END:7679686 } -=| MIDDLE_POINT:7678941 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 102 122 1 954 341 XLS3_Contig465 AT2G25670 expressed protein [ AT2G25670 18400901 NP_565603.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:10936140 CHROM_POS_END:10937697 } -=| MIDDLE_POINT:10936918 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.26 57 65 114 1 882 318 XLS3_Contig466 AT2G15230 lipase family protein, similar to SP|P07098 Triacylglycerol lipase, gastric precursor (EC 3.1.1.3) {Homo sapiens} [ 30679362 NP_179126.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6619748 CHROM_POS_END:6622286 } -=| MIDDLE_POINT:6621017 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.78 56 137 243 1 924 393 XLS3_Contig467 AT5G42050 expressed protein, similar to gda-1 (Pisum sativum) GI:2765418 [ 18422167 NP_568600.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16832858 CHROM_POS_END:16834160 } -=| MIDDLE_POINT:16833509 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.54 45 126 277 1 804 349 XLS3_Contig468 AT4G33670 L-galactose dehydrogenase (L-GalDH), identical to L-galactose dehydrogenase (Arabidopsis thaliana) GI:16555790 [ 15235040 NP_195093.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16169673 CHROM_POS_END:16171449 } -=| MIDDLE_POINT:16170561 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 223 284 1 901 319 XLS3_Contig469 AT5G67300 myb family transcription factor, contains PFAM profile: myb DNA binding domain PF00249 [ 15240708 NP_201531.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:26871335 CHROM_POS_END:26872252 } -=| MIDDLE_POINT:26871793 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.72 64 138 214 1 951 305 XLS3_Contig470 AT4G36930 basic helix-loop-helix (bHLH) protein SPATULA (SPT), identical to SPATULA (SPT) GI:11245493 from (Arabidopsis thaliana) [ 18419937 NP_568010.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17414164 CHROM_POS_END:17415942 } -=| MIDDLE_POINT:17415053 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.29 55 73 131 1 945 373 XLS3_Contig471 AT5G67260 cyclin family protein, similar to cyclin D3.1 protein (Nicotiana tabacum) GI:4160300 [ 15240257 NP_201527.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:26853539 CHROM_POS_END:26854891 } -=| MIDDLE_POINT:26854215 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.51 45 101 223 1 1015 367 XLS3_Contig472 AT1G12680 protein kinase family protein, contains protein kinase domain, Pfam:PF00069 [ 15222045 NP_172728.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4320121 CHROM_POS_END:4322267 } -=| MIDDLE_POINT:4321194 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.52 64 98 153 1 1013 470 XLS3_Contig473 AT3G59380 farnesyltransferase alpha subunit, putative / FTA, putative / protein farnesyltransferase, putative, similar to farnesyltransferase alpha subunit (GI:2246442)(Pisum sativum) [ 18411158 NP_567084.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21955186 CHROM_POS_END:21956758 } -=| MIDDLE_POINT:21955972 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 177 267 1 908 326 XLS3_Contig474 AT5G03290 isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative, strong similarity to isocitrate dehydrogenase (NAD+) (Nicotiana tabacum) GI:3021506 [ 18414179 NP_568113.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:794042 CHROM_POS_END:795938 } -=| MIDDLE_POINT:794990 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.9 61 181 296 1 1125 374 XLS3_Contig475 AT4G10610 RNA-binding protein, putative [ AT4G10610 15235177 NP_192799.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:6557332 CHROM_POS_END:6559139 } -=| MIDDLE_POINT:6558235 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.22 39 77 196 1 1062 336 XLS3_Contig476 AT3G01080 WRKY family transcription factor, similar to NtWRKY1 transcription factor GB:BAA82107 from (Nicotiana tabacum) [ 22330782 NP_186757.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:25514 CHROM_POS_END:27456 } -=| MIDDLE_POINT:26485 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.22 33 55 165 1 880 423 XLS3_Contig477 AT3G01360 expressed protein, contains Pfam profile PF04819: Family of unknown function (DUF716) (Plant viral-response family) [ 15232098 NP_186785.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:137779 CHROM_POS_END:138738 } -=| MIDDLE_POINT:138258 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.73 47 136 285 1 1365 319 XLS3_Contig478 AT5G50150 expressed protein, strong similarity to unknown protein (gb|AAF04872.1) contains Pfam profile PF03080: Arabidopsis proteins of unknown function [ 15240622 NP_199826.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20419670 CHROM_POS_END:20423601 } -=| MIDDLE_POINT:20421635 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 206 302 1 1182 420 XLS3_Contig479 AT4G32940 vacuolar processing enzyme gamma / gamma-VPE, nearly identical to SP|Q39119 Vacuolar processing enzyme, gamma-isozyme precursor (EC 3.4.22.-) (Gamma-VPE) {Arabidopsis thaliana} [ 15233996 NP_195020.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15900560 CHROM_POS_END:15903164 } -=| MIDDLE_POINT:15901862 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 213 283 1 892 494 XLS3_Contig480 AT1G10970 metal transporter, putative (ZIP4), similar to Zn and Cd transporter ZNT1 (Thlaspi caerulescens) gi|7381054|gb|AAF61374 [ 30682009 NP_172566.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3665201 CHROM_POS_END:3666933 } -=| MIDDLE_POINT:3666067 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.71 54 148 270 1 1023 408 XLS3_Contig481 no_hits_found 0 0 XLS3_Contig482 AT2G35600 expressed protein [ AT2G35600 18403894 NP_565809.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14948171 CHROM_POS_END:14950360 } -=| MIDDLE_POINT:14949265 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.28 47 80 167 1 828 331 XLS3_Contig483 AT1G22380 similar to UDP-glucose glucosyltransferase, putative [Arabidopsis thaliana] (TAIR:At1g78270.1) [ 79349376 NP_173655.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7900511 CHROM_POS_END:7902321 } -=| MIDDLE_POINT:7901416 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.77 48 130 267 1 931 488 XLS3_Contig484 AT2G27600 AAA-type ATPase family protein / vacuolar sorting protein-related, similar to SP|P46467 SKD1 protein (Vacuolar sorting protein 4b) {Mus musculus} [ 15226199 NP_180328.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11788303 CHROM_POS_END:11790807 } -=| MIDDLE_POINT:11789555 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 238 278 1 1259 435 XLS3_Contig485 AT1G71840 transducin family protein / WD-40 repeat family protein, contains Pfam profile:PF00560 Leucine Rich Repeat (4 copies) [ 30698820 NP_177329.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:27026086 CHROM_POS_END:27028042 } -=| MIDDLE_POINT:27027064 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 266 395 1 1443 407 XLS3_Contig486 AT2G40800 expressed protein [ AT2G40800 15226745 NP_181612.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17031731 CHROM_POS_END:17033847 } -=| MIDDLE_POINT:17032789 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.61 55 124 224 1 917 377 XLS3_Contig487 AT1G13570 F-box family protein, contains F-box domain Pfam:PF00646 [ 15222887 NP_172814.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4642525 CHROM_POS_END:4643927 } -=| MIDDLE_POINT:4643226 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.29 38 75 195 1 871 416 XLS3_Contig488 AT5G14540 proline-rich family protein, contains proline rich extensin domains, INTERPRO:IPR002965 [ 42567849 NP_196958.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4687336 CHROM_POS_END:4689627 } -=| MIDDLE_POINT:4688481 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.82 43 204 471 1 1440 547 XLS3_Contig489 AT5G49820 expressed protein, contains Pfam domain, PF04884: Protein of unknown function, DUF647 [ 18423070 NP_568713.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20263979 CHROM_POS_END:20266658 } -=| MIDDLE_POINT:20265318 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.9 69 172 249 1 967 497 XLS3_Contig490 AT3G53420 plasma membrane intrinsic protein 2A (PIP2A) / aquaporin PIP2.1 (PIP2.1), identical to plasma membrane intrinsic protein 2A SP: P43286 from (Arabidopsis thaliana) [ 15231810 NP_190910.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:19814884 CHROM_POS_END:19816432 } -=| MIDDLE_POINT:19815658 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.98 69 187 268 1 879 287 XLS3_Contig491 AT5G48930 transferase family protein, similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (GI:3288180, GI:2239091) [ 15239747 NP_199704.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19853880 CHROM_POS_END:19855318 } -=| MIDDLE_POINT:19854599 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.81 54 150 275 1 913 433 XLS3_Contig492 AT2G17440 leucine-rich repeat family protein, contains Pfam PF00560: Leucine Rich Repeats [ 15227838 NP_179336.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7578413 CHROM_POS_END:7580488 } -=| MIDDLE_POINT:7579450 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.5 38 116 299 1 898 526 XLS3_Contig493 AT1G67970 heat shock factor protein, putative (HSF5) / heat shock transcription factor, putative (HSTF5), identical to heat shock transcription factor 5 (HSF5) SP:Q9S7U5 from (Arabidopsis thaliana) [ 15220611 NP_176964.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:25488507 CHROM_POS_END:25489976 } -=| MIDDLE_POINT:25489241 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.59 43 133 308 1 1069 374 XLS3_Contig494 AT4G37310 cytochrome P450, putative [ AT4G37310 30690935 NP_568024.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17556146 CHROM_POS_END:17558827 } -=| MIDDLE_POINT:17557486 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.7 45 145 322 1 995 518 XLS3_Contig495 AT5G19350 RNA-binding protein 45 (RBP45), putative [ AT5G19350 15239715 NP_197436.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6518980 CHROM_POS_END:6521297 } -=| MIDDLE_POINT:6520138 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 266 411 1 1304 425 XLS3_Contig496 AT2G38090 myb family transcription factor, contains Pfam profile: PF00249 myb-like DNA-binding domain [ 30687381 NP_181344.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15952356 CHROM_POS_END:15953853 } -=| MIDDLE_POINT:15953104 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.23 60 49 81 1 922 298 XLS3_Contig497 AT1G70520 protein kinase family protein, contains Pfam domain, PF00069: Protein kinase domain [ 15223169 NP_177209.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26588551 CHROM_POS_END:26590997 } -=| MIDDLE_POINT:26589774 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.24 28 65 232 1 883 649 XLS3_Contig498 AT4G34020 DJ-1 family protein, similar to CAP1 (Rattus norvegicus) GI:3250916, ThiJ protein, Escherichia coli, PIR:H64771 [ 22329146 NP_195128.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:16298558 CHROM_POS_END:16300902 } -=| MIDDLE_POINT:16299730 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.78 55 156 280 1 912 472 XLS3_Contig499 no_hits_found 0 0 XLS3_Contig500 AT5G47730 SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative, similar to polyphosphoinositide binding protein SEC14 homolog Ssh1p (GI:2739044) {Glycine max} [ 15238794 NP_199584.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19351818 CHROM_POS_END:19353844 } -=| MIDDLE_POINT:19352831 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 226 335 1 1339 341 XLS3_Contig501 AT2G16050 DC1 domain-containing protein, contains Pfam domain PF03107: DC1 domain [ 15226674 NP_179203.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6987532 CHROM_POS_END:6988035 } -=| MIDDLE_POINT:6987783 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.24 40 56 140 1 1042 167 XLS3_Contig502 AT1G08530 expressed protein [ AT1G08530 30680683 NP_172329.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2701255 CHROM_POS_END:2702955 } -=| MIDDLE_POINT:2702105 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.53 60 111 184 1 848 257 XLS3_Contig503 AT2G37770 similar to aldo/keto reductase family protein [Arabidopsis thaliana] (TAIR:At3g53880.1) [ 79324628 NP_001031505.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:15841966 CHROM_POS_END:15843737 } -=| MIDDLE_POINT:15842851 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 183 235 1 1022 315 XLS3_Contig504 AT3G51520 diacylglycerol acyltransferase family, contains Pfam PF03982: Diacylglycerol acyltransferase [ 18409359 NP_566952.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19121718 CHROM_POS_END:19123497 } -=| MIDDLE_POINT:19122607 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.91 59 157 263 1 1020 314 XLS3_Contig505 AT5G38510 rhomboid family protein, contains Pfam profile PF01694: Rhomboid family [ 15240938 NP_198667.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15435069 CHROM_POS_END:15437232 } -=| MIDDLE_POINT:15436150 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.54 41 120 288 1 906 434 XLS3_Contig506 AT5G07850 transferase family protein, similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase, Dianthus caryophyllus (gi:2239091) [ 15240871 NP_196402.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2508918 CHROM_POS_END:2510504 } -=| MIDDLE_POINT:2509711 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.79 48 145 298 1 944 456 XLS3_Contig507 AT1G17050 geranyl diphosphate synthase, putative / GPPS, putative / dimethylallyltransferase, putative / prenyl transferase, putative, similar to GI:11322965 [ 22329620 NP_173148.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5829282 CHROM_POS_END:5831208 } -=| MIDDLE_POINT:5830245 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.41 52 107 203 1 1012 417 XLS3_Contig508 AT3G25430 CAF1 family ribonuclease, contains Pfam domain, PF04857: CAF1 family ribonuclease [ 15230837 NP_189170.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9222441 CHROM_POS_END:9224937 } -=| MIDDLE_POINT:9223689 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.48 54 99 181 1 982 618 XLS3_Contig509 AT2G40620 bZIP transcription factor family protein, identical to b-Zip DNA binding protein GI:2246376 from (Arabidopsis thaliana) [ 15226727 NP_181594.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16961882 CHROM_POS_END:16963950 } -=| MIDDLE_POINT:16962916 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.76 64 164 254 1 848 367 XLS3_Contig510 AT4G12230 esterase/lipase/thioesterase family protein, low similarity to 2-hydroxy-6-ketonona-2,4-dienedoic acid hydrolase [ 15234483 NP_192960.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7284639 CHROM_POS_END:7287342 } -=| MIDDLE_POINT:7285990 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 228 273 1 1093 392 XLS3_Contig511 AT4G27680 MSP1 protein, putative / intramitochondrial sorting protein, putative, similar to Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4) (Saccharomyces cerevisiae) [ 15234242 NP_194498.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:13821269 CHROM_POS_END:13823089 } -=| MIDDLE_POINT:13822179 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 86 247 284 1 941 398 XLS3_Contig512 AT4G00110 NAD-dependent epimerase/dehydratase family protein, similar to nucleotide sugar epimerase from Vibrio vulnificus GI:3093975 (PID:g3093975), WbnF (Escherichia coli) GI:5739472, CAPI protein {Staphylococcus aureus} SP|P39858 [ 15236712 NP_191922.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:38702 CHROM_POS_END:39994 } -=| MIDDLE_POINT:39348 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 209 255 1 1212 430 XLS3_Contig513 AT4G35850 pentatricopeptide (PPR) repeat-containing protein, low similarity to CRP1 (Zea mays) GI:3289002 [ 18419731 NP_567990.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16983641 CHROM_POS_END:16986684 } -=| MIDDLE_POINT:16985162 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.99 64 176 273 1 906 444 XLS3_Contig514 AT5G60820 zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) [ 15239441 NP_200890.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:24486862 CHROM_POS_END:24488121 } -=| MIDDLE_POINT:24487491 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.11 30 87 282 1 993 419 XLS3_Contig515 AT1G49970 ATP-dependent Clp protease proteolytic subunit (ClpR1) (nClpP5), identical to nClpP5 GB:BAA82069 GI:5360595 from (Arabidopsis thaliana) [ 18402863 NP_564560.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18505604 CHROM_POS_END:18508130 } -=| MIDDLE_POINT:18506867 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 226 329 1 1022 387 XLS3_Contig516 AT5G18640 lipase class 3 family protein, low similarity to Triacylglycerol Acylhydrolase (E.C.3.1.1.3) (Rhizomucor miehei) GI:230348 [ 15238889 NP_197365.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6213249 CHROM_POS_END:6215496 } -=| MIDDLE_POINT:6214372 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 60 214 351 1 1375 369 XLS3_Contig517 AT3G59310 expressed protein, identical to anthocyanin-related membrane protein 1 (Arabidopsis thaliana) GI:16416383 [ 42572725 NP_974458.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21933293 CHROM_POS_END:21935290 } -=| MIDDLE_POINT:21934291 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.82 71 145 204 1 901 363 XLS3_Contig518 AT3G12900 oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to SP|P10967 1-aminocyclopropane-1-carboxylate oxidase homolog (Protein E8) {Lycopersicon esculentum}, desacetoxyvindoline-4-hydroxylase (Catharanthus roseus) GI:2352812 [ 15230628 NP_187896.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4104583 CHROM_POS_END:4106119 } -=| MIDDLE_POINT:4105351 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 55 193 346 1 1075 357 XLS3_Contig519 AT1G22540 proton-dependent oligopeptide transport (POT) family protein, contains Pfam profile: PF00854 POT family [ 30687920 NP_173670.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7964191 CHROM_POS_END:7966211 } -=| MIDDLE_POINT:7965201 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.93 70 168 237 1 992 557 XLS3_Contig520 AT1G62990 homeodomain transcription factor (KNAT7), contains Pfam profiles: PF03789 ELK domain, PF03790 KNOX1 domain, PF03791 KNOX2 domain [ 18407708 NP_564805.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:23341133 CHROM_POS_END:23344013 } -=| MIDDLE_POINT:23342573 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 192 255 1 1211 291 XLS3_Contig521 AT2G26260 3-beta hydroxysteroid dehydrogenase/isomerase family protein, contains Pfam profile PF01073 3-beta hydroxysteroid dehydrogenase/isomerase domain [ 42569340 NP_180194.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:11185315 CHROM_POS_END:11189950 } -=| MIDDLE_POINT:11187632 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 197 253 1 861 564 XLS3_Contig522 no_hits_found 0 0 XLS3_Contig523 AT5G02270 ABC transporter family protein, NBD-like protein POP, Arabidopsis thaliana, EMBL:AF127664 [ 15241744 NP_195847.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:467267 CHROM_POS_END:469039 } -=| MIDDLE_POINT:468153 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 165 202 1 1037 328 XLS3_Contig524 AT4G27410 no apical meristem (NAM) family protein (RD26), contains Pfam PF02365: No apical meristem (NAM) domain [ 18416983 NP_567773.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:13707934 CHROM_POS_END:13709019 } -=| MIDDLE_POINT:13708476 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 175 243 1 859 297 XLS3_Contig525 AT3G17880 tetratricoredoxin (TDX), identical to tetratricoredoxin (Arabidopsis thaliana) GI:18041544 [ 30684711 NP_188415.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6123540 CHROM_POS_END:6126119 } -=| MIDDLE_POINT:6124829 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.85 58 165 282 1 925 380 XLS3_Contig526 AT3G14100 oligouridylate-binding protein, putative, similar to GB:CAB75429 (GI:6996560) from (Nicotiana plumbaginifolia), contains Pfam profiles: PF00076 RNA recognition motif (3 copies) [ 15231783 NP_188026.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4673034 CHROM_POS_END:4675957 } -=| MIDDLE_POINT:4674495 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 192 243 1 892 427 XLS3_Contig527 AT2G37035 expressed protein [ AT2G37035 30687010 NP_850276.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15562453 CHROM_POS_END:15563859 } -=| MIDDLE_POINT:15563156 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.6 46 133 287 1 954 433 XLS3_Contig528 AT3G13920 similar to eukaryotic translation initiation factor 4A, putative / eIF-4A, putative [Arabidopsis thaliana] (TAIR:At1g72730.1) [ 79313227 NP_001030693.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4592593 CHROM_POS_END:4594135 } -=| MIDDLE_POINT:4593364 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 92 341 369 1 1223 415 XLS3_Contig529 AT2G34590 transketolase family protein, similar to SP|O66113 Pyruvate dehydrogenase E1 component, beta subunit (EC 1.2.4.1). {Zymomonas mobilis} [ 15226781 NP_181006.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14576035 CHROM_POS_END:14577923 } -=| MIDDLE_POINT:14576979 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 206 262 1 949 406 XLS3_Contig530 AT3G63200 patatin-related, low similarity to patatin-like latex protein allergen Hev b 7 - Hevea brasiliensis, EMBL:AF113546 [ 18412659 NP_567142.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:23357115 CHROM_POS_END:23358354 } -=| MIDDLE_POINT:23357734 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 182 261 1 983 384 XLS3_Contig531 AT2G46210 delta-8 sphingolipid desaturase, putative, similar to delta-8 sphingolipid desaturase GI:3819708 from (Brassica napus) [ 15225939 NP_182144.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18984615 CHROM_POS_END:18985964 } -=| MIDDLE_POINT:18985289 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.98 66 155 233 1 899 449 XLS3_Contig532 AT4G14900 hydroxyproline-rich glycoprotein family protein [ AT4G14900 18414336 NP_567447.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8521754 CHROM_POS_END:8523602 } -=| MIDDLE_POINT:8522678 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.88 55 172 310 1 1242 532 XLS3_Contig533 AT5G48930 transferase family protein, similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (GI:3288180, GI:2239091) [ 15239747 NP_199704.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19853880 CHROM_POS_END:19855318 } -=| MIDDLE_POINT:19854599 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.72 58 123 212 1 856 433 XLS3_Contig534 AT4G33950 protein kinase, putative, similar to abscisic acid-activated protein kinase (Vicia faba) gi|6739629|gb|AAF27340 [ 18418337 NP_567945.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16272369 CHROM_POS_END:16274662 } -=| MIDDLE_POINT:16273515 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 92 203 219 1 907 362 XLS3_Contig535 AT3G06810 acyl-CoA dehydrogenase-related, low similarity to acyl-CoA dehydrogenase (Acinetobacter sp. NCIMB9871) GI:14587418 [ 30680020 NP_187337.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2146540 CHROM_POS_END:2150660 } -=| MIDDLE_POINT:2148600 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.12 71 25 35 1 861 824 XLS3_Contig536 AT1G08040 expressed protein, contains Pfam profile PF05212: Protein of unknown function (DUF707) [ 18390845 NP_563805.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2495504 CHROM_POS_END:2497970 } -=| MIDDLE_POINT:2496737 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 176 250 1 904 382 XLS3_Contig537 AT3G56860 UBP1 interacting protein 2a (UBA2a), identical to UBP1 interacting protein 2a (Arabidopsis thaliana) GI:19682816 [ 30694529 NP_850711.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21061687 CHROM_POS_END:21063123 } -=| MIDDLE_POINT:21062405 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.72 51 145 280 1 879 478 XLS3_Contig538 AT1G07570 protein kinase (APK1a), identical to Protein kinase APK1A from (Arabidopsis thaliana) SWISS-PROT:Q06548 [ 42571375 NP_973778.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2331366 CHROM_POS_END:2333207 } -=| MIDDLE_POINT:2332286 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.85 68 159 233 1 898 410 XLS3_Contig539 AT1G09160 protein phosphatase 2C-related / PP2C-related, similar to GB:AAC16260 [ 30680988 NP_849621.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2953201 CHROM_POS_END:2955061 } -=| MIDDLE_POINT:2954131 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 186 218 1 964 428 XLS3_Contig540 AT4G31580 splicing factor RSZp22 (RSZP22) / 9G8-like SR protein (SRZ22), identical to RSZp22 protein (Arabidopsis thaliana) gi|2582645|emb|CAA05352, 9G8-like SR protein (Arabidopsis thaliana) GI:3435094 [ 15236000 NP_194886.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15306989 CHROM_POS_END:15308070 } -=| MIDDLE_POINT:15307529 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.69 70 145 207 1 911 200 XLS3_Contig541 AT5G54590 protein kinase family protein, contains eukaryotic protein kinase domain, INTERPRO:IPR000719 [ 30696480 NP_568809.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:22197706 CHROM_POS_END:22199924 } -=| MIDDLE_POINT:22198815 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 199 265 1 965 440 XLS3_Contig542 AT2G46225 expressed protein [ AT2G46225 18407012 NP_566067.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18989186 CHROM_POS_END:18991147 } -=| MIDDLE_POINT:18990166 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.7 55 141 255 1 871 298 XLS3_Contig543 AT5G35460 expressed protein [ AT5G35460 15238520 NP_198396.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:13689828 CHROM_POS_END:13691776 } -=| MIDDLE_POINT:13690802 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 220 283 1 1145 381 XLS3_Contig544 AT3G23750 leucine-rich repeat family protein / protein kinase family protein, contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain [ 15229508 NP_189017.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8558339 CHROM_POS_END:8561270 } -=| MIDDLE_POINT:8559804 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 310 386 1 1330 928 XLS3_Contig545 AT1G68530 very-long-chain fatty acid condensing enzyme (CUT1), identical to very-long-chain fatty acid condensing enzyme (CUT1) GB:AF129511 (required for cuticular wax biosynthesis and pollen fertility: Millar,A.A., et al., Plant Cell (1999)) [ 15221431 NP_177020.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:25716544 CHROM_POS_END:25718396 } -=| MIDDLE_POINT:25717470 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 217 268 1 881 497 XLS3_Contig546 AT4G29380 protein kinase family protein / WD-40 repeat family protein, contains Pfam PF00400: WD domain, G-beta repeat [ 15233564 NP_194667.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:14458828 CHROM_POS_END:14464698 } -=| MIDDLE_POINT:14461763 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 208 242 1 952 1494 XLS3_Contig547 AT1G25450 very-long-chain fatty acid condensing enzyme, putative, nearly identical to fatty acid condensing enzyme CUT1 GI:5001734 from (Arabidopsis thaliana) [ 15222592 NP_173916.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8938666 CHROM_POS_END:8940269 } -=| MIDDLE_POINT:8939467 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.9 54 160 292 1 1038 492 XLS3_Contig548 AT3G03770 leucine-rich repeat transmembrane protein kinase, putative, may contain C-terminal ser/thr protein kinase domain, similar to serine/threonine protein kinase Pto GB:AAB47421 (Lycopersicon esculentum) [ 18396660 NP_566213.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:945310 CHROM_POS_END:948443 } -=| MIDDLE_POINT:946876 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.8 46 164 354 1 1089 802 XLS3_Contig549 no_hits_found 0 0 XLS3_Contig550 AT4G24740 protein kinase (AFC2), identical to protein kinase AFC2 (Arabidopsis thaliana) SWISS-PROT:P51567 [ 15233948 NP_194205.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:12754739 CHROM_POS_END:12757663 } -=| MIDDLE_POINT:12756201 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 277 338 1 1157 427 XLS3_Contig551 AT4G13310 cytochrome P450 71A20, putative (CYP71A20), Identical to Cytochrome P450 (SP:Q9T0K2) (Arabidopsis thaliana) [ 42566749 NP_193067.3 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7750449 CHROM_POS_END:7753045 } -=| MIDDLE_POINT:7751747 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.43 36 104 283 1 850 497 XLS3_Contig552 AT5G64150 methylase family protein, contains TIGRfam TIGR00536: modification methylase, HemK family [ 15237618 NP_201220.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:25686223 CHROM_POS_END:25687957 } -=| MIDDLE_POINT:25687090 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.83 51 142 277 1 919 377 XLS3_Contig553 AT5G07830 glycosyl hydrolase family 79 N-terminal domain-containing protein, similar to beta-glucuronidase GI:8918740 from (Scutellaria baicalensis) [ 42567736 NP_196400.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2504169 CHROM_POS_END:2506568 } -=| MIDDLE_POINT:2505368 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 62 245 394 1 1469 543 XLS3_Contig554 AT5G60360 cysteine proteinase, putative / AALP protein (AALP), identical to AALP protein GI:7230640 from (Arabidopsis thaliana) [ 18424347 NP_568921.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:24297270 CHROM_POS_END:24299378 } -=| MIDDLE_POINT:24298324 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 250 358 1 1309 358 XLS3_Contig555 AT1G72550 tRNA synthetase beta subunit family protein, contains Pfam profiles: PF03484 phenylalanine-tRNA synthetase, B5 domain, PF03483 B3/4 domain [ 15218527 NP_177399.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:27323609 CHROM_POS_END:27327570 } -=| MIDDLE_POINT:27325589 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 190 248 1 916 598 XLS3_Contig556 AT5G23570 XS domain-containing protein / XS zinc finger domain-containing protein-related, contains Pfam profiles PF03468: XS domain, weak hit to PF03470: XS zinc finger domain [ 15237789 NP_197747.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7943624 CHROM_POS_END:7945877 } -=| MIDDLE_POINT:7944750 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.77 60 131 216 1 961 625 XLS3_Contig557 AT2G42300 basic helix-loop-helix (bHLH) family protein, contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain [ 30688981 NP_850368.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17628620 CHROM_POS_END:17631713 } -=| MIDDLE_POINT:17630166 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.54 50 128 254 1 881 327 XLS3_Contig558 AT5G05160 leucine-rich repeat transmembrane protein kinase, putative [ 15238453 NP_196135.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1528001 CHROM_POS_END:1530018 } -=| MIDDLE_POINT:1529009 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.49 48 85 175 1 1269 640 XLS3_Contig559 AT4G34160 cyclin delta-3 (CYCD3), identical to SP|P42753 Cyclin delta-3 {Arabidopsis thaliana} [ 15235254 NP_195142.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16357907 CHROM_POS_END:16359308 } -=| MIDDLE_POINT:16358607 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.65 51 134 258 1 888 376 XLS3_Contig560 AT2G14720 vacuolar sorting receptor, putative, identical to GB:U79960 GI:1737220 [ 15225994 NP_179079.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:6307960 CHROM_POS_END:6311238 } -=| MIDDLE_POINT:6309599 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 217 266 1 1019 628 XLS3_Contig561 AT2G45750 dehydration-responsive family protein, similar to early-responsive to dehydration stress ERD3 protein (Arabidopsis thaliana) GI:15320410 [ 15225560 NP_182099.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18849729 CHROM_POS_END:18852417 } -=| MIDDLE_POINT:18851073 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.82 60 150 247 1 806 631 XLS3_Contig562 AT2G45260 expressed protein, contains Pfam profile PF04859: Plant protein of unknown function (DUF641 [ 15225441 NP_182051.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18671735 CHROM_POS_END:18673012 } -=| MIDDLE_POINT:18672373 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 269 382 1 1391 425 XLS3_Contig563 AT2G38560 transcription factor S-II (TFIIS) domain-containing protein, similar to SP|P49373 Transcription elongation factor S-II (TFIIS) {Schizosaccharomyces pombe} [ 15224901 NP_181390.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16141880 CHROM_POS_END:16143397 } -=| MIDDLE_POINT:16142638 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.74 49 153 308 1 923 378 XLS3_Contig564 AT1G56020 expressed protein [ AT1G56020 15222823 NP_175998.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20955881 CHROM_POS_END:20957077 } -=| MIDDLE_POINT:20956479 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.44 46 119 255 1 888 398 XLS3_Contig565 AT1G80170 polygalacturonase, putative / pectinase, putative, similar to polygalacturonase GI:7381227 from (Lycopersicon esculentum) [ 18412685 NP_565232.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:30158538 CHROM_POS_END:30160575 } -=| MIDDLE_POINT:30159556 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.73 54 127 232 1 905 444 XLS3_Contig566 AT2G32760 expressed protein [ AT2G32760 30685426 NP_850197.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:13899217 CHROM_POS_END:13901372 } -=| MIDDLE_POINT:13900294 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.42 51 86 167 1 910 352 XLS3_Contig567 AT1G63120 rhomboid family protein, contains PFAM domain PF01694, Rhomboid family [ 15221690 NP_176500.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:23412719 CHROM_POS_END:23414390 } -=| MIDDLE_POINT:23413554 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 175 255 1 1019 317 XLS3_Contig568 no_hits_found 0 0 XLS3_Contig569 AT1G05200 glutamate receptor family protein (GLR3.4), plant glutamate receptor family, PMID:11379626 [ 30679161 NP_172012.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1505641 CHROM_POS_END:1509001 } -=| MIDDLE_POINT:1507321 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 247 344 1 1135 959 XLS3_Contig570 AT2G28000 RuBisCO subunit binding-protein alpha subunit, chloroplast / 60 kDa chaperonin alpha subunit / CPN-60 alpha, identical to SWISS-PROT:P21238- RuBisCO subunit binding-protein alpha subunit, chloroplast precursor (60 kDa chaperonin alpha subunit, CPN-60 alpha) (Arabidopsis thaliana) [ 15226314 NP_180367.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11933680 CHROM_POS_END:11936261 } -=| MIDDLE_POINT:11934970 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 226 283 1 912 586 XLS3_Contig571 AT1G29220 transcriptional regulator family protein, similar to Transcriptional regulator protein HCNGP (Swiss-Prot:Q02614) (Mus musculus) [ 18396997 NP_564324.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:10210664 CHROM_POS_END:10212557 } -=| MIDDLE_POINT:10211610 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.22 39 66 166 1 985 351 XLS3_Contig572 AT1G09130 ATP-dependent Clp protease proteolytic subunit, putative, similar to nClpP5 GI:5360595 from (Arabidopsis thaliana) [ 18390982 NP_563836.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2940065 CHROM_POS_END:2942219 } -=| MIDDLE_POINT:2941142 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 244 331 1 1304 330 XLS3_Contig573 AT5G35220 peptidase M50 family protein / sterol-regulatory element binding protein (SREBP) site 2 protease family protein, contains PFam PF02163: sterol-regulatory element binding protein (SREBP) site 2 protease [ 15238440 NP_198372.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13501836 CHROM_POS_END:13504776 } -=| MIDDLE_POINT:13503306 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.7 51 149 288 1 1037 548 XLS3_Contig574 AT5G67460 glycosyl hydrolase family protein 17, similar to beta-1,3-glucanase GI:6714534 from (Salix gilgiana) [ 15240743 NP_201547.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26939210 CHROM_POS_END:26940500 } -=| MIDDLE_POINT:26939855 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.3 35 101 287 1 931 380 XLS3_Contig575 AT3G59340 expressed protein, identical to anthocyanin-related membrane protein 3 (GI:16416387) (Arabidopsis thaliana) [ 18411146 NP_567081.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21939948 CHROM_POS_END:21942007 } -=| MIDDLE_POINT:21940977 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.5 40 94 232 1 1071 333 XLS3_Contig576 AT3G07360 armadillo/beta-catenin repeat family protein / U-box domain-containing protein, contains Pfam domain, PF00514: Armadillo/beta-catenin-like repeats and Pfam, PF04564: U-box domain [ 18397921 NP_566304.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2354890 CHROM_POS_END:2356619 } -=| MIDDLE_POINT:2355754 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.51 46 107 230 1 944 460 XLS3_Contig577 AT5G58600 expressed protein, various predicted proteins, Arabidopsis thaliana and Oryza sativa [ 15237711 NP_200668.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:23701170 CHROM_POS_END:23702905 } -=| MIDDLE_POINT:23702037 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.89 62 141 225 1 904 402 XLS3_Contig578 AT2G13360 serine-glyoxylate aminotransferase-related, similar to serine-glyoxylate aminotransferase (GI:21535798)(Methylobacterium dichloromethanicum [ 15225026 NP_178969.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:5546499 CHROM_POS_END:5547984 } -=| MIDDLE_POINT:5547241 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 251 294 1 938 401 XLS3_Contig579 AT5G61820 expressed protein, MtN19, Medicago truncatula, EMBL:MTY15367 [ 22328003 NP_200990.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:24851731 CHROM_POS_END:24853449 } -=| MIDDLE_POINT:24852590 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.87 55 152 274 1 1092 475 XLS3_Contig580 AT4G24460 expressed protein [ AT4G24460 30686536 NP_194177.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12642898 CHROM_POS_END:12645320 } -=| MIDDLE_POINT:12644109 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.71 65 135 205 1 854 431 XLS3_Contig581 AT2G37560 origin recognition complex subunit 2 (ORC2), identical to origin recognition complex subunit 2 (ORC2) SP:Q38899 from (Arabidopsis thaliana) [ 15224316 NP_181292.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:15766646 CHROM_POS_END:15768194 } -=| MIDDLE_POINT:15767420 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 188 290 1 901 363 XLS3_Contig582 AT2G19160 expressed protein, contains Pfam profile PF03267: Arabidopsis protein of unknown function, DUF266 [ 30680587 NP_849985.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8318003 CHROM_POS_END:8320677 } -=| MIDDLE_POINT:8319340 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.57 61 95 154 1 894 394 XLS3_Contig583 AT3G46540 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related, contains Pfam PF01417: ENTH domain. ENTH (Epsin N-terminal homology) domain [ 15231451 NP_190238.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17145189 CHROM_POS_END:17146396 } -=| MIDDLE_POINT:17145792 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.63 58 122 208 1 892 307 XLS3_Contig584 no_hits_found 0 0 XLS3_Contig585 AT5G18410 expressed protein, similar to p53 inducible protein (Homo sapiens) GI:5616320 [ 30686810 NP_197342.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:6097458 CHROM_POS_END:6104785 } -=| MIDDLE_POINT:6101121 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 272 391 1 1186 1234 XLS3_Contig586 AT1G11760 expressed protein, weak similarity to Pfam PF01648: 4'-phosphopantetheinyl transferase superfamily [ 15221091 NP_172641.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3970545 CHROM_POS_END:3973295 } -=| MIDDLE_POINT:3971920 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.3 40 68 170 1 834 393 XLS3_Contig587 AT5G56090 cytochrome oxidase assembly family protein, contains PF02628: Cytochrome oxidase assembly protein [ 15241121 NP_200420.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22731860 CHROM_POS_END:22733831 } -=| MIDDLE_POINT:22732845 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 182 254 1 960 457 XLS3_Contig588 no_hits_found 0 0 XLS3_Contig589 no_hits_found 0 0 XLS3_Contig590 AT1G78850 curculin-like (mannose-binding) lectin family protein, low similarity to ser/thr protein kinase from Zea mays (GI:2598067) [ 15219200 NP_178006.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:29646965 CHROM_POS_END:29648290 } -=| MIDDLE_POINT:29647627 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.71 55 138 248 1 804 441 XLS3_Contig591 AT5G12470 expressed protein [ AT5G12470 18416870 NP_568280.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4044953 CHROM_POS_END:4047293 } -=| MIDDLE_POINT:4046123 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.76 61 139 225 1 936 386 XLS3_Contig592 AT5G50400 calcineurin-like phosphoesterase family protein, contains Pfam profile: PF00149 calcineurin-like phosphoesterase [ 42568444 NP_199851.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20540801 CHROM_POS_END:20543457 } -=| MIDDLE_POINT:20542129 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.88 62 155 249 1 897 611 XLS3_Contig593 AT1G61590 protein kinase, putative, contains protein kinase domain, Pfam:PF00069 [ 15220535 NP_176353.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:22727356 CHROM_POS_END:22729687 } -=| MIDDLE_POINT:22728521 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 226 288 1 901 424 XLS3_Contig594 AT3G58460 rhomboid family protein / ubiquitin-associated (UBA)/TS-N domain-containing protein, contains Pfam profiles PF01694: Rhomboid family, PF00627: UBA/TS-N domain [ 18410961 NP_567064.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21634351 CHROM_POS_END:21637325 } -=| MIDDLE_POINT:21635838 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 191 268 1 924 403 XLS3_Contig595 AT5G43060 cysteine proteinase, putative / thiol protease, putative, similar to cysteine proteinase RD21A precursor (thiol protease) GI:435619, SP:P43297 from (Arabidopsis thaliana) [ 18422289 NP_568620.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17287012 CHROM_POS_END:17289345 } -=| MIDDLE_POINT:17288178 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 61 232 375 1 1212 463 XLS3_Contig596 AT3G14610 cytochrome P450, putative, similar to GB:Q05047 from (Catharanthus roseus) [ 15231889 NP_188079.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4912572 CHROM_POS_END:4914510 } -=| MIDDLE_POINT:4913541 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.76 52 141 268 1 844 512 XLS3_Contig597 AT5G22070 expressed protein, contains Pfam profile PF03267: Arabidopsis protein of unknown function, DUF266 [ 30688302 NP_680193.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7308258 CHROM_POS_END:7309346 } -=| MIDDLE_POINT:7308802 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.59 49 119 240 1 976 362 XLS3_Contig598 AT3G01640 GHMP kinase family protein, contains GHMP kinases putative ATP-binding protein domain, Pfam:PF00288 [ 30678384 NP_566144.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:239425 CHROM_POS_END:241205 } -=| MIDDLE_POINT:240315 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 196 263 1 991 362 XLS3_Contig599 AT5G01180 proton-dependent oligopeptide transport (POT) family protein, contains Pfam profile: PF00854 POT family [ 15240905 NP_195738.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:61256 CHROM_POS_END:63239 } -=| MIDDLE_POINT:62247 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 192 272 1 1061 570 XLS3_Contig600 AT2G35930 U-box domain-containing protein, similar to immediate-early fungal elicitor protein CMPG1 (Petroselinum crispum) GI:14582200 [ 30686609 NP_181137.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15090180 CHROM_POS_END:15091415 } -=| MIDDLE_POINT:15090797 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.73 53 148 275 1 950 411 XLS3_Contig601 AT4G37650 short-root transcription factor (SHR) [ AT4G37650 15235646 NP_195480.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17691865 CHROM_POS_END:17693460 } -=| MIDDLE_POINT:17692662 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 55 286 517 1 1616 531 XLS3_Contig602 AT4G24570 mitochondrial substrate carrier family protein, contains Pfam profile: PF00153 mitochondrial carrier protein [ 15233884 NP_194188.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12686556 CHROM_POS_END:12687497 } -=| MIDDLE_POINT:12687026 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.93 72 176 243 1 993 313 XLS3_Contig603 AT1G13870 expressed protein, similar to KTI12 protein (SP:P34253) {Saccharomyces cerevisiae} [ 15222972 NP_172840.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4747434 CHROM_POS_END:4748342 } -=| MIDDLE_POINT:4747888 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.89 68 155 225 1 840 302 XLS3_Contig604 AT3G21280 ubiquitin-specific protease 7, putative (UBP7), similar to GI:11993467 [ 42565077 NP_566680.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7478172 CHROM_POS_END:7482043 } -=| MIDDLE_POINT:7480107 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 221 291 1 934 532 XLS3_Contig605 AT5G54810 tryptophan synthase, beta subunit 1 (TSB1), identical to SP|P14671 [ 15239755 NP_200292.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:22282031 CHROM_POS_END:22283964 } -=| MIDDLE_POINT:22282997 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 222 291 1 944 470 XLS3_Contig606 no_hits_found 0 0 XLS3_Contig607 AT1G74680 exostosin family protein, contains Pfam profile: PF03016 Exostosin family [ 18410670 NP_565089.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:28063189 CHROM_POS_END:28064645 } -=| MIDDLE_POINT:28063917 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.76 49 143 291 1 868 461 XLS3_Contig608 AT2G39990 eukaryotic translation initiation factor 3 subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1), identical to SP|O04202 Eukaryotic translation initiation factor 3 subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f) {Arabidopsis thaliana} [ 15225611 NP_181528.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16705410 CHROM_POS_END:16707007 } -=| MIDDLE_POINT:16706208 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 184 256 1 927 293 XLS3_Contig609 AT3G14850 expressed protein, similar to expressed protein [Arabidopsis thaliana] (TAIR:At1g29050.1) [ 79607892 NP_974314.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4995622 CHROM_POS_END:4997618 } -=| MIDDLE_POINT:4996620 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.83 53 133 250 1 902 356 XLS3_Contig610 AT5G65970 seven transmembrane MLO family protein / MLO-like protein 10 (MLO10), identical to membrane protein Mlo10 (Arabidopsis thaliana) gi|14091590|gb|AAK53803 [ 15239213 NP_201398.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26404735 CHROM_POS_END:26407633 } -=| MIDDLE_POINT:26406184 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 269 399 1 1450 569 XLS3_Contig611 AT4G00234 expressed protein [ AT4G00234 18411261 NP_567158.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:100919 CHROM_POS_END:101788 } -=| MIDDLE_POINT:101353 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.47 47 94 197 1 887 263 XLS3_Contig612 AT1G34670 myb family transcription factor, similar to myb-related protein mixta GI:485867 from (Antirrhinum majus) [ 15218730 NP_174726.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12709106 CHROM_POS_END:12710401 } -=| MIDDLE_POINT:12709753 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.77 59 147 248 1 985 365 XLS3_Contig613 AT3G56860 UBP1 interacting protein 2a (UBA2a), identical to UBP1 interacting protein 2a (Arabidopsis thaliana) GI:19682816 [ 30694529 NP_850711.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21061687 CHROM_POS_END:21063123 } -=| MIDDLE_POINT:21062405 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.52 40 107 265 1 893 478 XLS3_Contig614 AT5G13710 sterol 24-C-methyltransferase, putative, similar to SP:P25087 Sterol 24-C-methyltransferase, Delta(24)-sterol C- methyltransferase, Saccharomyces cerevisiae [ 15240691 NP_196875.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4424051 CHROM_POS_END:4426869 } -=| MIDDLE_POINT:4425460 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 86 179 208 1 876 336 XLS3_Contig615 AT2G38670 ethanolamine-phosphate cytidylyltransferase, putative / phosphorylethanolamine transferase, putative / CTP:phosphoethanolamine cytidylyltransferase, putative, similar to SP|Q99447 Ethanolamine-phosphate cytidylyltransferase (EC 2.7.7.14) {Homo sapiens} [ 15224925 NP_181401.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16176057 CHROM_POS_END:16178758 } -=| MIDDLE_POINT:16177407 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 248 310 1 1037 421 XLS3_Contig616 AT2G20900 diacylglycerol kinase, putative, contains INTERPRO domain, IPR001206, DAG-kinase catalytic domain [ 30681194 NP_850007.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:8996493 CHROM_POS_END:8999879 } -=| MIDDLE_POINT:8998186 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.63 61 113 183 1 887 509 XLS3_Contig617 AT3G10700 GHMP kinase family protein, contains Pfam profile: PF00288 GHMP kinases putative ATP-binding proteins [ 22330971 NP_187681.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3346794 CHROM_POS_END:3350868 } -=| MIDDLE_POINT:3348831 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.78 73 142 194 1 731 424 XLS3_Contig618 AT1G49450 transducin family protein / WD-40 repeat family protein, contains 7 WD-40 repeats (PF00400) [ 15222143 NP_175369.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18309352 CHROM_POS_END:18310767 } -=| MIDDLE_POINT:18310059 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.64 52 140 269 1 865 471 XLS3_Contig619 AT3G53520 NAD-dependent epimerase/dehydratase family protein, similar to UDP-glucuronic acid decarboxylase Uxs1p from Filobasidiella neoformans GI:14318327 [ 30693847 NP_190920.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:19852613 CHROM_POS_END:19855035 } -=| MIDDLE_POINT:19853824 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.87 64 173 267 1 930 426 XLS3_Contig620 AT4G35890 La domain-containing protein, contains Pfam PF05383: La domain [ 18419738 NP_567991.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16997436 CHROM_POS_END:17000413 } -=| MIDDLE_POINT:16998924 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.44 37 122 325 1 1434 523 XLS3_Contig621 AT1G20670 DNA-binding bromodomain-containing protein, contains bromodomain, INTERPRO:IPR001487 [ 15218005 NP_173490.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7164527 CHROM_POS_END:7167923 } -=| MIDDLE_POINT:7166225 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.6 55 118 214 1 908 652 XLS3_Contig622 AT4G05020 NADH dehydrogenase-related, similar to alternative NADH-dehydrogenase (Yarrowia lipolytica) GI:3718005, 64 kDa mitochondrial NADH dehydrogenase (Neurospora crassa) GI:4753821 [ 18412775 NP_567283.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2572750 CHROM_POS_END:2576220 } -=| MIDDLE_POINT:2574485 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 196 284 1 1000 582 XLS3_Contig623 AT2G18950 homogentisate phytylprenyltransferase family protein (HPT1) / tocopherol phytyltransferase family protein (TPT1), identical to gi:17104828 [ 30680535 NP_849984.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8214573 CHROM_POS_END:8217129 } -=| MIDDLE_POINT:8215851 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.41 57 91 157 1 841 393 XLS3_Contig624 AT3G07700 ABC1 family protein, contains Pfam domain, PF03109: ABC1 family [ 18398032 NP_566315.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2459702 CHROM_POS_END:2463247 } -=| MIDDLE_POINT:2461474 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.28 38 88 226 1 960 695 XLS3_Contig625 AT4G35140 transducin family protein / WD-40 repeat family protein, contains 6 (3 significant) WD-40 repeats [ 30690225 NP_195240.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16723878 CHROM_POS_END:16726482 } -=| MIDDLE_POINT:16725180 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.9 63 156 244 1 874 496 XLS3_Contig626 AT3G30775 proline oxidase, mitochondrial / osmotic stress-responsive proline dehydrogenase (POX) (PRO1) (ERD5), nearly identical to SP|P92983 Proline oxidase, mitochondrial precursor (EC 1.5.3.-) (Osmotic stress- induced proline dehydrogenase) (Arabidopsis thaliana) [ 42565343 NP_189701.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12451359 CHROM_POS_END:12453605 } -=| MIDDLE_POINT:12452482 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.56 55 116 210 1 892 499 XLS3_Contig627 no_hits_found 0 0 XLS3_Contig628 AT4G37070 patatin, putative, similar to patatin-like latex allergen (Hevea brasiliensis)(PMID:10589016) [ 30690843 NP_849511.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17464910 CHROM_POS_END:17467052 } -=| MIDDLE_POINT:17465981 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.97 59 168 282 1 882 414 XLS3_Contig629 AT3G26210 cytochrome P450 71B23, putative (CYP71B23), Identical to Cytochrome P450 71B23 (SP:Q9LTM0)(Arabidopsis thaliana) [ 15231526 NP_189252.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9594566 CHROM_POS_END:9596439 } -=| MIDDLE_POINT:9595502 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.93 40 188 462 1 1383 501 XLS3_Contig630 AT5G60920 phytochelatin synthetase, putative / COBRA cell expansion protein COB, putative, similar to phytochelatin synthetase GI:29570314 [ 18424412 NP_568930.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:24528692 CHROM_POS_END:24531158 } -=| MIDDLE_POINT:24529925 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 191 262 1 905 456 XLS3_Contig631 AT1G26520 similar to PRLI-interacting factor L, putative [Arabidopsis thaliana] (TAIR:At1g15730.1) [ 79352873 NP_173974.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9163435 CHROM_POS_END:9165581 } -=| MIDDLE_POINT:9164508 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 191 264 1 901 334 XLS3_Contig632 no_hits_found 0 0 XLS3_Contig633 AT2G24360 serine/threonine/tyrosine kinase, putative, similar to serine/threonine/tyrosine kinase (Arachis hypogaea) gi|13124865|gb|AAK11734 [ 18400528 NP_565568.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:10371822 CHROM_POS_END:10373155 } -=| MIDDLE_POINT:10372488 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.59 59 124 210 1 875 411 XLS3_Contig634 AT4G28200 expressed protein [ AT4G28200 15234413 NP_194549.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13987814 CHROM_POS_END:13990428 } -=| MIDDLE_POINT:13989121 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 55 293 528 1 1594 648 XLS3_Contig635 AT1G19400 expressed protein [ AT1G19400 30686353 NP_850946.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:6712213 CHROM_POS_END:6713667 } -=| MIDDLE_POINT:6712940 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.48 51 103 200 1 854 303 XLS3_Contig636 AT5G62700 tubulin beta-2/beta-3 chain (TUB3), nearly identical to SP|P29512 Tubulin beta-2/beta-3 chain {Arabidopsis thaliana} [ 18424622 NP_568960.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:25201727 CHROM_POS_END:25203652 } -=| MIDDLE_POINT:25202689 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 97 264 272 1 923 450 XLS3_Contig637 AT5G03450 zinc finger (C3HC4-type RING finger) family protein [ AT5G03450 42567616 NP_195965.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:858953 CHROM_POS_END:862237 } -=| MIDDLE_POINT:860595 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.31 37 69 182 1 728 630 XLS3_Contig638 AT5G59210 myosin heavy chain-related, contains weak similarity to Myosin heavy chain, gizzard smooth muscle (Swiss-Prot:P10587) (Gallus gallus) [ 30697185 NP_851219.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:23908028 CHROM_POS_END:23910845 } -=| MIDDLE_POINT:23909436 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 61 183 300 1 962 434 XLS3_Contig639 AT1G44750 purine permease family protein, similar to purine permease (Arabidopsis thaliana) GI:7620007 [ 15219436 NP_175096.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:16895128 CHROM_POS_END:16897608 } -=| MIDDLE_POINT:16896368 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 192 286 1 976 379 XLS3_Contig640 AT4G39910 ubiquitin-specific protease 3 (UBP3), identical to GI:2347098 [ 18420557 NP_568074.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18511852 CHROM_POS_END:18514133 } -=| MIDDLE_POINT:18512992 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 220 262 1 996 371 XLS3_Contig641 AT1G30700 FAD-binding domain-containing protein, similar to SP|P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) (Eschscholzia californica) [ 15221473 NP_174357.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10892605 CHROM_POS_END:10894419 } -=| MIDDLE_POINT:10893512 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.78 50 141 280 1 926 527 XLS3_Contig642 AT1G32450 proton-dependent oligopeptide transport (POT) family protein, contains Pfam profile: PF00854 POT family [ 30692706 NP_174523.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11715317 CHROM_POS_END:11719787 } -=| MIDDLE_POINT:11717552 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 281 401 1 1874 614 XLS3_Contig643 AT5G23940 transferase family protein, similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase, Dianthus caryophyllus (gi:2239091) [ 15237858 NP_197782.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8076619 CHROM_POS_END:8079680 } -=| MIDDLE_POINT:8078149 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.91 60 176 289 1 898 484 XLS3_Contig644 AT5G06150 cyclin 1b (CYC1b), identical to cyclin (Arabidopsis thaliana) GI:1360646 [ 15239938 NP_196233.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1859543 CHROM_POS_END:1861571 } -=| MIDDLE_POINT:1860557 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.45 45 107 233 1 911 445 XLS3_Contig645 AT1G67340 zinc finger (MYND type) family protein / F-box family protein [ 18408746 NP_564894.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:25233986 CHROM_POS_END:25235285 } -=| MIDDLE_POINT:25234635 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.77 75 139 185 1 863 379 XLS3_Contig646 AT4G11120 translation elongation factor Ts (EF-Ts), putative, similar to ethylene-responsive elongation factor EF-Ts precursor (Lycopersicon esculentum) GI:5669636 [ 42566427 NP_192850.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6778062 CHROM_POS_END:6779930 } -=| MIDDLE_POINT:6778996 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 231 359 1 1161 395 XLS3_Contig647 AT1G01240 expressed protein [ AT1G01240 18378816 NP_563623.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:100683 CHROM_POS_END:101678 } -=| MIDDLE_POINT:101180 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.25 47 58 123 1 1251 331 XLS3_Contig648 no_hits_found 0 0 XLS3_Contig649 AT2G36690 oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to IDS3 (Hordeum vulgare)(GI:4514655), leucoanthocyanidin dioxygenase (SP|P51091)(Malus domestica) [ 42569681 NP_181207.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15387009 CHROM_POS_END:15389066 } -=| MIDDLE_POINT:15388037 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.46 55 90 163 1 879 366 XLS3_Contig650 AT5G54930 AT hook motif-containing protein, contains Pfam profile PF02178: AT hook motif [ 18423689 NP_568817.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:22323123 CHROM_POS_END:22324065 } -=| MIDDLE_POINT:22323594 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.23 35 75 214 1 945 286 XLS3_Contig651 AT4G34320 expressed protein, similar to At14a, GI:11994571 and GI:11994573 (Arabidopsis thaliana) [ 15235330 NP_195158.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16422440 CHROM_POS_END:16423828 } -=| MIDDLE_POINT:16423134 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.96 70 184 261 1 1221 374 XLS3_Contig652 AT2G27430 expressed protein [ AT2G27430 30683515 NP_180312.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11736992 CHROM_POS_END:11740248 } -=| MIDDLE_POINT:11738620 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.57 46 135 289 1 1271 438 XLS3_Contig653 AT3G06190 speckle-type POZ protein-related, similar to SPOP (novel nuclear speckle-type protein) (SP:O43791) (Homo sapiens) [ 18397497 NP_566275.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1874583 CHROM_POS_END:1876581 } -=| MIDDLE_POINT:1875582 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.88 78 154 195 1 944 406 XLS3_Contig654 AT4G22360 SWIB complex BAF60b domain-containing protein, contains Pfam profile PF02201: BAF60b domain of the SWIB complex [ 18415906 NP_567661.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11807823 CHROM_POS_END:11809672 } -=| MIDDLE_POINT:11808747 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.7 50 159 318 1 966 385 XLS3_Contig655 AT1G24040 GCN5-related N-acetyltransferase (GNAT) family protein, contains Pfam profile PF00583: acetyltransferase, GNAT family [ 30688695 NP_173815.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:8505783 CHROM_POS_END:8506742 } -=| MIDDLE_POINT:8506262 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.66 51 145 281 1 848 319 XLS3_Contig656 AT3G16910 AMP-dependent synthetase and ligase family protein, similar to AMP-binding protein GI:1903034 from (Brassica napus) [ 15228909 NP_188316.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5773237 CHROM_POS_END:5775417 } -=| MIDDLE_POINT:5774327 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 330 446 1 1413 569 XLS3_Contig657 AT2G45770 signal recognition particle receptor protein, chloroplast (FTSY), similar to Cell division protein ftsY homolog (SP:O67066) {Aquifex aeolicus} [ 18406885 NP_566056.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18858322 CHROM_POS_END:18860476 } -=| MIDDLE_POINT:18859399 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 201 248 1 900 366 XLS3_Contig658 AT3G62800 double-stranded RNA-binding domain (DsRBD)-containing protein, weak similarity to SP|P19525 Interferon-induced, double-stranded RNA-activated protein kinase (EC 2.7.1.-) {Homo sapiens} [ 22331912 NP_191839.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:23236724 CHROM_POS_END:23238138 } -=| MIDDLE_POINT:23237431 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.42 42 87 203 1 943 355 XLS3_Contig659 no_hits_found 0 0 XLS3_Contig660 AT5G03330 OTU-like cysteine protease family protein, contains Pfam profile PF02338: OTU-like cysteine protease [ 15242721 NP_195953.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:807727 CHROM_POS_END:809607 } -=| MIDDLE_POINT:808667 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.45 41 96 229 1 1024 356 XLS3_Contig661 AT4G31420 zinc finger (C2H2 type) family protein, contains Pfam profile: PF00096 zinc finger, C2H2 type [ 42573111 NP_974652.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:15245993 CHROM_POS_END:15247769 } -=| MIDDLE_POINT:15246881 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.93 61 163 264 1 879 405 XLS3_Contig662 AT1G74380 galactosyl transferase GMA12/MNN10 family protein, very low similarity to alpha-1,2-galactosyltransferase, Schizosaccharomyces pombe (SP|Q09174) [ 15221224 NP_177578.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:27963509 CHROM_POS_END:27964882 } -=| MIDDLE_POINT:27964195 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.56 63 117 183 1 881 457 XLS3_Contig663 AT1G69630 F-box family protein, contains F-box domain Pfam:PF00646 [ 15222387 NP_177121.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26195303 CHROM_POS_END:26196837 } -=| MIDDLE_POINT:26196070 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.19 31 82 257 1 892 451 XLS3_Contig664 AT3G20330 aspartate carabmoyltransferase, chloroplast / aspartate transcarbamylase / ATCase (PYRB), identical to SP|P49077 Aspartate carbamoyltransferase, chloroplast precursor (EC 2.1.3.2) (Aspartate transcarbamylase) (ATCase) {Arabidopsis thaliana} [ 15231112 NP_188668.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7090360 CHROM_POS_END:7091910 } -=| MIDDLE_POINT:7091135 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.64 77 126 163 1 859 390 XLS3_Contig665 AT4G33010 glycine dehydrogenase (decarboxylating), putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative, strong similarity to SP|P49361 Glycine dehydrogenase (decarboxylating) A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei} [ 15234036 NP_195027.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15926855 CHROM_POS_END:15931153 } -=| MIDDLE_POINT:15929004 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 86 208 241 1 928 1037 XLS3_Contig666 AT5G40990 GDSL-motif lipase/hydrolase family protein, similar to lipase (Arabidopsis thaliana) GI:1145627 [ 15237530 NP_198915.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16436148 CHROM_POS_END:16437628 } -=| MIDDLE_POINT:16436888 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.56 58 64 109 1 913 374 XLS3_Contig667 AT5G47530 auxin-responsive protein, putative, similar to auxin-induced protein AIR12 (GI:11357190) (Arabidopsis thaliana) [ 15238124 NP_199564.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19298698 CHROM_POS_END:19300097 } -=| MIDDLE_POINT:19299397 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.45 65 78 120 1 988 395 XLS3_Contig668 AT1G48620 histone H1/H5 family protein, weak similarity to HMG I/Y like protein (Glycine max) GI:15706274, HMG-I/Y protein HMGa (Triticum aestivum) GI:20502966 [ 15221913 NP_175295.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17977816 CHROM_POS_END:17979969 } -=| MIDDLE_POINT:17978892 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.26 34 93 273 1 897 479 XLS3_Contig669 AT2G44520 UbiA prenyltransferase family protein, similar to SP|Q12887 Protoheme IX farnesyltransferase, mitochondrial precursor (EC 2.5.1.-) (Heme O synthase) {Homo sapiens}, SP|P21592 COX10 {Saccharomyces cerevisiae} [ 18406556 NP_566019.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18386736 CHROM_POS_END:18388807 } -=| MIDDLE_POINT:18387771 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.91 58 175 300 1 948 431 XLS3_Contig670 AT5G08520 myb family transcription factor, contains Pfam profile: PF00249 myb-like DNA-binding domain [ 15241652 NP_196469.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2755471 CHROM_POS_END:2757742 } -=| MIDDLE_POINT:2756606 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.62 71 120 168 1 968 298 XLS3_Contig671 no_hits_found 0 0 XLS3_Contig672 AT5G56130 transducin family protein / WD-40 repeat family protein, contains 5 WD-40 repeats (PF00400) [ 15241134 NP_200424.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:22739981 CHROM_POS_END:22742291 } -=| MIDDLE_POINT:22741136 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 88 202 228 1 1056 315 XLS3_Contig673 AT1G20110 zinc finger (FYVE type) family protein, contains Pfam profile: PF01363 FYVE zinc finger [ 18394823 NP_564103.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6971545 CHROM_POS_END:6974569 } -=| MIDDLE_POINT:6973057 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.32 36 114 310 1 895 601 XLS3_Contig674 AT4G25030 expressed protein [ AT4G25030 15234866 NP_194233.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:12865346 CHROM_POS_END:12866648 } -=| MIDDLE_POINT:12865997 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 221 336 1 1378 344 XLS3_Contig675 AT3G62770 transport protein-related, weak similarity to Gsa12p (Pichia pastoris) GI:18307769 [ 42572767 NP_974479.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:23229834 CHROM_POS_END:23232085 } -=| MIDDLE_POINT:23230959 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.92 56 163 287 1 978 432 XLS3_Contig676 AT4G02715 expressed protein [ AT4G02715 22328251 NP_680565.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1202170 CHROM_POS_END:1202787 } -=| MIDDLE_POINT:1202478 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.14 36 52 143 1 802 205 XLS3_Contig677 AT1G13020 eukaryotic translation initiation factor, putative (EIF4B5), eukaryotic initiation factor 4B (GI:6739522) {Arabidopsis thaliana} [ 15222146 NP_172761.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4440925 CHROM_POS_END:4443518 } -=| MIDDLE_POINT:4442221 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 54 274 501 1 1505 549 XLS3_Contig678 AT2G30040 protein kinase family protein, contains protein kinase domain, Pfam:PF00069 [ 15227689 NP_180565.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12828824 CHROM_POS_END:12830215 } -=| MIDDLE_POINT:12829519 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.78 56 156 278 1 863 463 XLS3_Contig679 AT4G06599 ubiquitin family protein, contains Pfam domian PF00240: Ubiquitin family [ 30680235 NP_849320.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3666076 CHROM_POS_END:3667492 } -=| MIDDLE_POINT:3666784 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 228 274 1 964 340 XLS3_Contig680 AT3G28910 myb family transcription factor (MYB30), identical to myb-like protein GB:AJ007289 (Arabidopsis thaliana) (Plant J. 20 (1), 57-66 (1999)) [ 15228529 NP_189533.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10912680 CHROM_POS_END:10914093 } -=| MIDDLE_POINT:10913386 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.84 59 167 280 1 907 323 XLS3_Contig681 AT1G75800 pathogenesis-related thaumatin family protein, similar to receptor serine/threonine kinase PR5K (Arabidopsis thaliana) GI:1235680 [ 15222875 NP_177708.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:28462550 CHROM_POS_END:28464108 } -=| MIDDLE_POINT:28463329 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 181 264 1 913 330 XLS3_Contig682 AT1G18740 expressed protein [ AT1G18740 18394649 NP_564062.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6464116 CHROM_POS_END:6465264 } -=| MIDDLE_POINT:6464690 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.48 50 116 229 1 963 382 XLS3_Contig683 AT5G41210 glutathione S-transferase (GST10), identical to glutathione transferase AtGST 10 (Arabidopsis thaliana) GI:4049401 [ 15237583 NP_198937.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16509778 CHROM_POS_END:16511112 } -=| MIDDLE_POINT:16510445 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.73 60 129 214 1 1205 245 XLS3_Contig684 AT1G37130 nitrate reductase 2 (NR2), identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana} [ 15221314 NP_174901.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:14161058 CHROM_POS_END:14164093 } -=| MIDDLE_POINT:14162575 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 291 388 1 1164 917 XLS3_Contig685 AT2G43430 hydroxyacylglutathione hydrolase, mitochondrial / glyoxalase II (GLX2-1), identical to SP|O24495 Hydroxyacylglutathione hydrolase, mitochondrial precursor (EC 3.1.2.6) (Glyoxalase II) (Glx II) {Arabidopsis thaliana} [ 18406237 NP_565999.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:18042646 CHROM_POS_END:18045141 } -=| MIDDLE_POINT:18043893 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.37 66 72 108 1 1075 331 XLS3_Contig686 AT2G20990 C2 domain-containing protein (sytA), similar to Ca2+-dependent lipid-binding protein (CLB1) GI:2789434 from (Lycopersicon esculentum) [ 18399541 NP_565495.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9021908 CHROM_POS_END:9024910 } -=| MIDDLE_POINT:9023409 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 188 229 1 876 541 XLS3_Contig687 AT2G03630 hypothetical protein [ AT2G03630 15227680 NP_178461.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1103202 CHROM_POS_END:1103960 } -=| MIDDLE_POINT:1103581 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.12 33 52 155 1 934 252 XLS3_Contig688 AT1G60690 aldo/keto reductase family protein, contains Pfam profile PF00248: oxidoreductase, aldo/keto reductase family [ 15219786 NP_176268.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:22353557 CHROM_POS_END:22355333 } -=| MIDDLE_POINT:22354445 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 243 342 1 1353 345 XLS3_Contig689 AT3G52880 monodehydroascorbate reductase, putative, monodehydroascorbate reductase (NADH), Lycoperison esculentum, PIR:T06407 [ 15231702 NP_190856.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19612455 CHROM_POS_END:19615344 } -=| MIDDLE_POINT:19613899 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 214 263 1 876 434 XLS3_Contig690 AT1G31830 amino acid permease family protein, weak similarity to y+LAT1a (amino acid transporter) (Mus musculus) GI:3970791 [ 15222489 NP_174466.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:11418856 CHROM_POS_END:11420343 } -=| MIDDLE_POINT:11419599 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.93 70 155 219 1 835 495 XLS3_Contig691 AT4G37280 MRG family protein, contains Pfam domain PF05712: MRG [ AT4G37280 18420009 NP_568021.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17546742 CHROM_POS_END:17549356 } -=| MIDDLE_POINT:17548049 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.46 43 102 232 1 928 320 XLS3_Contig692 AT4G02290 glycosyl hydrolase family 9 protein, similar to endo-1,4-beta glucanase [ 15235301 NP_192138.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1002654 CHROM_POS_END:1005125 } -=| MIDDLE_POINT:1003889 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 233 297 1 908 516 XLS3_Contig693 AT4G22350 ubiquitin carboxyl-terminal hydrolase family protein, similar to U4/U6.U5 tri-snRNP-associated 65 kDa protein (Homo sapiens) GI:13926071 [ 22328871 NP_193966.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11804085 CHROM_POS_END:11806951 } -=| MIDDLE_POINT:11805518 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 191 284 1 968 510 XLS3_Contig694 AT1G12000 pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative, strong similarity to SP|Q41141 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase beta subunit (EC 2.7.1.90) (PFP) ((PPI-PFK) {Ricinus communis} [ 15221156 NP_172664.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4050157 CHROM_POS_END:4053725 } -=| MIDDLE_POINT:4051941 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 396 503 1 1558 566 XLS3_Contig695 AT3G19770 vacuolar sorting protein 9 domain-containing protein / VPS9 domain-containing protein, contains Pfam domain PF02204: Vacuolar sorting protein 9 (VPS9) domain [ 18402362 NP_566645.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:6866922 CHROM_POS_END:6869120 } -=| MIDDLE_POINT:6868021 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 62 251 402 1 1459 520 XLS3_Contig696 AT5G55230 microtubule associated protein (MAP65/ASE1) family protein, low similarity to protein regulating cytokinesis 1 (PRC1) (Homo sapiens) GI:2865521 [ 15240485 NP_200334.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22419942 CHROM_POS_END:22422408 } -=| MIDDLE_POINT:22421175 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.92 74 166 223 1 876 587 XLS3_Contig697 AT4G03020 transducin family protein / WD-40 repeat family protein, contains 6 WD-40 repeats (PF00400) [ 22328262 NP_192211.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1331704 CHROM_POS_END:1334472 } -=| MIDDLE_POINT:1333088 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.84 62 150 240 1 857 493 XLS3_Contig698 AT1G25380 mitochondrial substrate carrier family protein, contains Pfam profile: PF00153 mitochondrial carrier protein [ 18395659 NP_564233.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8903713 CHROM_POS_END:8905805 } -=| MIDDLE_POINT:8904759 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.64 66 122 184 1 950 363 XLS3_Contig699 AT5G06140 phox (PX) domain-containing protein, similar to SP|O60749 Sorting nexin 2 {Homo sapiens} [ 15239935 NP_196232.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1856213 CHROM_POS_END:1858753 } -=| MIDDLE_POINT:1857483 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 188 232 1 1002 402 XLS3_Contig700 AT3G48860 expressed protein [ AT3G48860 22331704 NP_190455.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:18128604 CHROM_POS_END:18132838 } -=| MIDDLE_POINT:18130721 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.62 49 143 290 1 916 577 XLS3_Contig701 AT3G03790 ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein, similar to hect domain and RLD 2 GB:NP_004658 (Homo sapiens) [ 42572237 NP_974213.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:963202 CHROM_POS_END:967864 } -=| MIDDLE_POINT:965533 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 271 368 1 1558 1081 XLS3_Contig702 AT1G78850 curculin-like (mannose-binding) lectin family protein, low similarity to ser/thr protein kinase from Zea mays (GI:2598067) [ 15219200 NP_178006.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:29646965 CHROM_POS_END:29648290 } -=| MIDDLE_POINT:29647627 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.69 48 146 300 1 885 441 XLS3_Contig703 AT5G01930 (1-4)-beta-mannan endohydrolase, putative, similar to (1-4)-beta-mannan endohydrolase (Coffea arabica) GI:10178872 [ 15241093 NP_195813.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:361186 CHROM_POS_END:362864 } -=| MIDDLE_POINT:362025 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 207 285 1 961 448 XLS3_Contig704 no_hits_found 0 0 XLS3_Contig705 AT1G05170 galactosyltransferase family protein [ AT1G05170 15220440 NP_172009.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1491459 CHROM_POS_END:1493930 } -=| MIDDLE_POINT:1492694 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.71 64 127 198 1 913 404 XLS3_Contig706 AT4G16480 sugar transporter family protein, similar to SP|Q96QE2 Proton myo-inositol co-transporter (Hmit) (Homo sapiens) [ 15235767 NP_193381.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9291268 CHROM_POS_END:9293105 } -=| MIDDLE_POINT:9292186 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 174 238 1 908 582 XLS3_Contig707 AT4G04320 malonyl-CoA decarboxylase family protein, contains weak similarity to Malonyl-CoA decarboxylase, mitochondrial precursor (EC 4.1.1.9) (MCD) (Swiss-Prot:O95822) (Homo sapiens) [ 22328323 NP_192341.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2113563 CHROM_POS_END:2116523 } -=| MIDDLE_POINT:2115043 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.86 62 166 267 1 876 518 XLS3_Contig708 AT2G37080 myosin heavy chain-related, low similarity to myosin heavy chain (Rana catesbeiana) GI:4249701 [ 15228082 NP_181245.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15588644 CHROM_POS_END:15591136 } -=| MIDDLE_POINT:15589890 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.49 56 112 198 1 977 583 XLS3_Contig709 AT5G53620 expressed protein [ AT5G53620 30696362 NP_851184.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21798443 CHROM_POS_END:21802287 } -=| MIDDLE_POINT:21800365 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.83 57 156 271 1 1024 682 XLS3_Contig710 AT5G63620 oxidoreductase, zinc-binding dehydrogenase family protein, contains PFAM zinc-binding dehydrogenase domain PF00107 [ 30697875 NP_568975.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:25483606 CHROM_POS_END:25485522 } -=| MIDDLE_POINT:25484564 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 171 224 1 981 427 XLS3_Contig711 AT5G08610 DEAD box RNA helicase (RH26), strong similarity to RNA helicase RH26 (Arabidopsis thaliana) GI:3776025 [ 30682500 NP_196478.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2790342 CHROM_POS_END:2794060 } -=| MIDDLE_POINT:2792201 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.51 41 140 341 1 977 850 XLS3_Contig712 AT5G19990 26S proteasome AAA-ATPase subunit (RPT6a) [ AT5G19990 18420092 NP_568389.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6752146 CHROM_POS_END:6754920 } -=| MIDDLE_POINT:6753533 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 89 252 282 1 926 419 XLS3_Contig713 AT3G54360 expressed protein, DNA-binding Mel-18 protein, Homo sapiens, PIR:JN0717 [ 15232495 NP_191004.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20139548 CHROM_POS_END:20142559 } -=| MIDDLE_POINT:20141053 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.91 58 166 282 1 1026 405 XLS3_Contig714 AT2G45240 methionyl aminopeptidase, putative / methionine aminopeptidase, putative / peptidase M, putative, similar to SP|Q01662 Methionine aminopeptidase 1 precursor (EC 3.4.11.18) {Saccharomyces cerevisiae} [ 15225437 NP_182049.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18663133 CHROM_POS_END:18665980 } -=| MIDDLE_POINT:18664556 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 206 259 1 953 398 XLS3_Contig715 AT5G01220 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase / sulfolipid synthase (SQD2), identical to GI:20302857 [ 30679163 NP_568085.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:86906 CHROM_POS_END:89884 } -=| MIDDLE_POINT:88395 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 146 213 1 1018 510 XLS3_Contig716 AT5G27410 aminotransferase class IV family protein, contains Pfam profile: PF01063 aminotransferase class IV [ 18421115 NP_568496.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9678824 CHROM_POS_END:9682471 } -=| MIDDLE_POINT:9680647 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.93 68 159 231 1 869 559 XLS3_Contig717 no_hits_found 0 0 XLS3_Contig718 AT5G41770 crooked neck protein, putative / cell cycle protein, putative, similar to Swiss-Prot:P17886 crooked neck protein (Drosophila melanogaster) [ 30693892 NP_198992.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16735249 CHROM_POS_END:16738164 } -=| MIDDLE_POINT:16736706 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 215 263 1 899 705 XLS3_Contig719 AT2G45030 mitochondrial elongation factor, putative, similar to SP|P25039 Elongation factor G 1, mitochondrial precursor (mEF-G-1) {Saccharomyces cerevisiae} [ 15225397 NP_182029.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18579486 CHROM_POS_END:18583831 } -=| MIDDLE_POINT:18581658 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 230 303 1 941 754 XLS3_Contig720 AT1G09870 histidine acid phosphatase family protein, contains Pfam profile PF00328: Histidine acid phosphatase [ 18391081 NP_563856.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3205819 CHROM_POS_END:3208446 } -=| MIDDLE_POINT:3207132 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.99 61 168 275 1 910 487 XLS3_Contig721 AT1G12950 MATE efflux family protein, similar to ripening regulated protein DDTFR18 (Lycopersicon esculentum) GI:12231296 [ 15222119 NP_172755.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4419847 CHROM_POS_END:4422460 } -=| MIDDLE_POINT:4421153 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 63 266 420 1 1399 522 XLS3_Contig722 AT4G16630 DEAD/DEAH box helicase, putative (RH28), identical to cDNA DEAD box RNA helicase, RH28 GI:3776026 [ 30683736 NP_193396.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9362198 CHROM_POS_END:9366471 } -=| MIDDLE_POINT:9364334 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.76 63 150 237 1 890 789 XLS3_Contig723 AT4G30310 ribitol kinase, putative, similar to ribitol kinase (Klebsiella pneumoniae) gi|2905643|gb|AAC26495 [ 42567264 NP_194760.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:14831919 CHROM_POS_END:14835098 } -=| MIDDLE_POINT:14833508 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 252 317 1 1043 579 XLS3_Contig724 AT3G62310 RNA helicase, putative, similar to SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43 (Helicase JA1) {Saccharomyces cerevisiae} [ 15228730 NP_191790.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:23068491 CHROM_POS_END:23071536 } -=| MIDDLE_POINT:23070013 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 146 189 1 894 726 XLS3_Contig725 AT3G19184 similar to transcriptional factor B3 family protein [Arabidopsis thaliana] (TAIR:At5g58280.1) [ 79313293 NP_001030726.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6637561 CHROM_POS_END:6638971 } -=| MIDDLE_POINT:6638266 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.31 43 61 139 1 899 284 XLS3_Contig726 AT4G34490 cyclase-associated protein (cap1), identical to cyclase-associated protein (cap1) GI:3169136 from (Arabidopsis thaliana) [ 15236128 NP_195175.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16484901 CHROM_POS_END:16487360 } -=| MIDDLE_POINT:16486130 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.85 66 156 234 1 879 476 XLS3_Contig727 AT4G14720 expressed protein [ AT4G14720 30682967 NP_193208.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8432447 CHROM_POS_END:8434929 } -=| MIDDLE_POINT:8433688 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.46 44 117 265 1 959 315 XLS3_Contig728 AT5G62650 expressed protein [ AT5G62650 18424615 NP_568958.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:25170099 CHROM_POS_END:25173098 } -=| MIDDLE_POINT:25171598 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.98 63 190 299 1 976 529 XLS3_Contig729 AT4G32180 eukaryotic pantothenate kinase family protein, similar to pantothenate kinase (Emericella nidulans) GI:4191500 [ 30689295 NP_194945.3 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:15537730 CHROM_POS_END:15543721 } -=| MIDDLE_POINT:15540725 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 84 324 383 1 1220 901 XLS3_Contig730 no_hits_found 0 0 XLS3_Contig731 AT1G51350 armadillo/beta-catenin repeat family protein, contains Pfam profile: PF00514 armadillo/beta-catenin-like repeat [ 15223823 NP_175546.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19039519 CHROM_POS_END:19042406 } -=| MIDDLE_POINT:19040962 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.85 58 158 270 1 920 666 XLS3_Contig732 AT1G80310 expressed protein [ AT1G80310 15220100 NP_178147.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:30199843 CHROM_POS_END:30201237 } -=| MIDDLE_POINT:30200540 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.99 65 194 294 1 981 464 XLS3_Contig733 AT1G48950 expressed protein, similar to expressed protein [Arabidopsis thaliana] (TAIR:At1g17210.1) [ 79361705 NP_175325.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18110731 CHROM_POS_END:18113776 } -=| MIDDLE_POINT:18112253 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.82 56 161 287 1 915 594 XLS3_Contig734 AT3G48500 expressed protein [ AT3G48500 42565717 NP_190419.3 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17973194 CHROM_POS_END:17976393 } -=| MIDDLE_POINT:17974793 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 191 257 1 914 668 XLS3_Contig735 AT5G52545 expressed protein [ AT5G52545 22327792 NP_680425.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21341185 CHROM_POS_END:21341671 } -=| MIDDLE_POINT:21341428 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.17 52 50 96 1 1232 132 XLS3_Contig736 AT5G61150 leo1-like family protein, weak similarity to SP|P38439 LEO1 protein {Saccharomyces cerevisiae} [ 30697484 NP_851237.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:24621072 CHROM_POS_END:24624754 } -=| MIDDLE_POINT:24622913 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.64 51 144 281 1 886 625 XLS3_Contig737 AT4G35260 isocitrate dehydrogenase subunit 1 / NAD+ isocitrate dehydrogenase subunit 1, nearly identical to NAD+ dependent isocitrate dehydrogenase subunit 1 (Arabidopsis thaliana) GI:1766046 [ 15236932 NP_195252.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16774499 CHROM_POS_END:16776238 } -=| MIDDLE_POINT:16775368 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 86 317 367 1 1360 367 XLS3_Contig738 AT3G62980 transport inhibitor response 1 (TIR1) (FBL1), E3 ubiquitin ligase SCF complex F-box subunit [ 18412567 NP_567135.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:23284454 CHROM_POS_END:23287156 } -=| MIDDLE_POINT:23285805 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 55 207 373 1 1312 594 XLS3_Contig739 AT4G25130 peptide methionine sulfoxide reductase, putative, strong similarity to SP|P54151 Peptide methionine sulfoxide reductase (EC 1.8.4.6) {Brassica napus} [ 15234942 NP_194243.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12898812 CHROM_POS_END:12900008 } -=| MIDDLE_POINT:12899410 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.92 65 164 250 1 887 258 XLS3_Contig740 AT2G25970 KH domain-containing protein [ AT2G25970 15225229 NP_180167.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11078922 CHROM_POS_END:11082682 } -=| MIDDLE_POINT:11080802 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 241 371 1 1141 632 XLS3_Contig741 AT5G54160 quercetin 3-O-methyltransferase 1 / flavonol 3-O-methyltransferase 1 / caffeic acid/5-hydroxyferulic acid O-methyltransferase (OMT1), identical to O-methyltransferase 1 (Arabidopsis thaliana)(GI:2781394), SP|Q9FK25 Quercetin 3-O-methyltransferase 1 (EC 2.1.1.76) (AtOMT1) (Flavonol 3- O-methyltransferase 1) (Caffeic acid/5-hydroxyferulic acid O- methyltransferase) {Arabidopsis thaliana} [ 15239571 NP_200227.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21999301 CHROM_POS_END:22001393 } -=| MIDDLE_POINT:22000347 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 199 272 1 922 363 XLS3_Contig742 AT2G36590 proline transporter, putative, strong similarity to proline transporter 1 GI:1769901 from (Arabidopsis thaliana) [ 15228000 NP_181198.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15350201 CHROM_POS_END:15352246 } -=| MIDDLE_POINT:15351223 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.42 39 85 215 1 860 436 XLS3_Contig743 AT3G05640 protein phosphatase 2C, putative / PP2C, putative, similar to protein phosphatase-2C GB:AAC36699 from (Mesembryanthemum crystallinum) [ 15230022 NP_187215.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1640616 CHROM_POS_END:1642233 } -=| MIDDLE_POINT:1641424 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.69 50 131 261 1 1001 358 XLS3_Contig744 AT2G01140 fructose-bisphosphate aldolase, putative, similar to plastidic aldolase NPALDP1 from Nicotiana paniculata (GI:4827251) [ 15226185 NP_178224.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:95005 CHROM_POS_END:96490 } -=| MIDDLE_POINT:95747 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 225 264 1 875 391 XLS3_Contig745 AT1G67170 expressed protein, similar to enterophilin-2L (GI:12718845) (Cavia porcellus) [ 30697468 NP_176888.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:25131390 CHROM_POS_END:25132808 } -=| MIDDLE_POINT:25132099 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.39 42 82 192 1 944 359 XLS3_Contig746 AT4G38430 expressed protein, contains Pfam profile PF03759: Domain of unknown function (DUF315) [ 15233845 NP_195556.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17986637 CHROM_POS_END:17988653 } -=| MIDDLE_POINT:17987645 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.84 55 166 297 1 895 548 XLS3_Contig747 AT1G15200 protein-protein interaction regulator family protein, contains Pfam PF04696: pinin/SDK/memA/ protein conserved region [ 18394209 NP_563965.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5228472 CHROM_POS_END:5231012 } -=| MIDDLE_POINT:5229742 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.76 57 155 269 1 842 423 XLS3_Contig748 AT5G23810 amino acid transporter family protein, similar to amino acid carrier (Ricinus communis) GI:3293031 [ 15237834 NP_197770.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:8028464 CHROM_POS_END:8030733 } -=| MIDDLE_POINT:8029598 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 60 185 304 1 993 467 XLS3_Contig749 AT5G66120 3-dehydroquinate synthase, putative, similar to aroB (Neisseria gonorrhoeae)(GI:2661441) [ 18425036 NP_569029.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:26448742 CHROM_POS_END:26450875 } -=| MIDDLE_POINT:26449808 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 90 181 199 1 895 442 XLS3_Contig750 no_hits_found 0 0 XLS3_Contig751 AT1G53460 expressed protein [ AT1G53460 18404478 NP_564632.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19958226 CHROM_POS_END:19960177 } -=| MIDDLE_POINT:19959201 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.18 31 59 186 1 701 314 XLS3_Contig752 AT2G40140 zinc finger (CCCH-type) family protein, contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) and Pfam domain, PF00023: Ankyrin repeat [ 15225637 NP_181543.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:16779615 CHROM_POS_END:16781408 } -=| MIDDLE_POINT:16780511 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 59 235 392 1 1340 597 XLS3_Contig753 AT5G10770 chloroplast nucleoid DNA-binding protein, putative, similar to CND41, chloroplast nucleoid DNA binding protein (Nicotiana tabacum) GI:2541876 [ 22326716 NP_196638.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3403332 CHROM_POS_END:3405332 } -=| MIDDLE_POINT:3404332 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.83 49 157 317 1 943 474 XLS3_Contig754 AT1G77360 pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat [ 15223926 NP_177860.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:29076877 CHROM_POS_END:29078322 } -=| MIDDLE_POINT:29077599 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.27 30 65 211 1 1116 481 XLS3_Contig755 AT4G22670 tetratricopeptide repeat (TPR)-containing protein, similar to Hsc70-interacting protein (Hip) from {Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503 [ 18415982 NP_567663.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11918247 CHROM_POS_END:11920682 } -=| MIDDLE_POINT:11919464 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 200 282 1 943 441 XLS3_Contig756 no_hits_found 0 0 XLS3_Contig757 no_hits_found 0 0 XLS3_Contig758 AT1G34430 dihydrolipoamide S-acetyltransferase, putative, similar to dihydrolipoamide S-acetyltransferase (LTA2) (Arabidopsis thaliana) GI:5881963 [ 15218630 NP_174703.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12588005 CHROM_POS_END:12590062 } -=| MIDDLE_POINT:12589033 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 223 318 1 1080 465 XLS3_Contig759 AT2G30580 zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) [ 18402394 NP_565702.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:13033521 CHROM_POS_END:13037440 } -=| MIDDLE_POINT:13035480 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.53 54 107 195 1 874 420 XLS3_Contig760 AT1G03140 splicing factor Prp18 family protein, contains Pfam profile: PF02840 Prp18 domain [ 18379060 NP_563676.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:754471 CHROM_POS_END:756223 } -=| MIDDLE_POINT:755347 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.97 61 193 312 1 992 420 XLS3_Contig761 AT5G67480 TAZ zinc finger family protein / BTB/POZ domain-containing protein, contains Pfam PF00651 : BTB/POZ domain [ 42573822 NP_975007.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:26948281 CHROM_POS_END:26949755 } -=| MIDDLE_POINT:26949018 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.5 53 102 191 1 923 383 XLS3_Contig762 AT3G19990 expressed protein [ AT3G19990 15231007 NP_188633.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6965677 CHROM_POS_END:6967108 } -=| MIDDLE_POINT:6966392 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 173 266 1 899 425 XLS3_Contig763 AT4G24160 hydrolase, alpha/beta fold family protein, contains Pfam profile PF00561: hydrolase, alpha/beta fold family [ 30686425 NP_194147.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:12539881 CHROM_POS_END:12542220 } -=| MIDDLE_POINT:12541050 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 173 242 1 970 418 XLS3_Contig764 AT1G78100 F-box family protein, contains F-box domain Pfam:PF00646 [ 18411823 NP_565169.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:29392800 CHROM_POS_END:29393804 } -=| MIDDLE_POINT:29393302 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.6 45 115 252 1 907 334 XLS3_Contig765 AT3G21070 ATP-NAD kinase family protein, contains Pfam domain, PF01513: ATP-NAD kinase [ 42565070 NP_188744.3 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7380440 CHROM_POS_END:7383880 } -=| MIDDLE_POINT:7382160 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 62 261 416 1 1466 530 XLS3_Contig766 AT1G73690 cell division protein kinase, putative, similar to cell division protein kinase 7 (Homo sapiens) SWISS-PROT:P50613 [ 15219522 NP_177510.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:27718774 CHROM_POS_END:27720679 } -=| MIDDLE_POINT:27719726 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 87 193 221 1 896 398 XLS3_Contig767 AT1G55460 Kin17 DNA-binding protein-related, contains similarity to zinc finger protein rts2 GB:U16133 GI:563244 from (Saccharomyces cerevisiae) [ 18405389 NP_564690.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20711233 CHROM_POS_END:20712468 } -=| MIDDLE_POINT:20711850 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 248 362 1 1129 411 XLS3_Contig768 AT2G04880 WRKY family transcription factor (ZAP1), identical to ZAP1 GI:1064883 from (Arabidopsis thaliana) [ 15224423 NP_178565.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1718554 CHROM_POS_END:1720216 } -=| MIDDLE_POINT:1719385 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.2 53 48 90 1 945 487 XLS3_Contig769 AT1G67230 expressed protein [ AT1G67230 15220369 NP_176892.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:25155224 CHROM_POS_END:25159695 } -=| MIDDLE_POINT:25157459 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.51 57 115 199 1 875 1132 XLS3_Contig770 AT1G55900 NLI interacting factor (NIF) family protein, contains Pfam profile PF03031: NLI interacting factor [ 22330273 NP_175986.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20906828 CHROM_POS_END:20909085 } -=| MIDDLE_POINT:20907956 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.7 51 138 269 1 935 376 XLS3_Contig771 AT3G01600 no apical meristem (NAM) family protein, contains Pfam PF02365: No apical meristem (NAM) domain [ 15232150 NP_186809.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:229372 CHROM_POS_END:231112 } -=| MIDDLE_POINT:230242 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.77 56 144 257 1 883 370 XLS3_Contig772 AT4G29210 gamma-glutamyltranspeptidase family protein, similar to SP|P07314 Gamma-glutamyltranspeptidase precursor (EC 2.3.2.2) (Gamma- glutamyltransferase) (GGT) {Rattus norvegicus} [ 15233493 NP_194650.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:14400996 CHROM_POS_END:14403325 } -=| MIDDLE_POINT:14402160 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.96 61 171 278 1 1054 637 XLS3_Contig773 AT5G41080 glycerophosphoryl diester phosphodiesterase family protein, weak similarity to SP|P37965 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) {Bacillus subtilis} [ 15237552 NP_198924.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:16459086 CHROM_POS_END:16461063 } -=| MIDDLE_POINT:16460074 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.71 57 140 244 1 952 374 XLS3_Contig774 AT5G52660 myb family transcription factor, contains PFAM profile: PF00249 myb-like DNA-binding domain [ 30696225 NP_568776.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21376649 CHROM_POS_END:21379263 } -=| MIDDLE_POINT:21377956 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.88 58 179 308 1 950 331 XLS3_Contig775 AT3G03960 chaperonin, putative, similar to SWISS-PROT:P42932- T-complex protein 1, theta subunit (TCP-1-theta) (Mus musculus) [ 18396719 NP_566219.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1024439 CHROM_POS_END:1027611 } -=| MIDDLE_POINT:1026025 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 242 291 1 985 549 XLS3_Contig776 AT5G51350 leucine-rich repeat transmembrane protein kinase, putative [ 15242059 NP_199948.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20885086 CHROM_POS_END:20887847 } -=| MIDDLE_POINT:20886466 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.1 25 56 216 1 1002 895 XLS3_Contig777 AT5G44070 phytochelatin synthase 1 (PCS1), identical to phytochelatin synthase (Arabidopsis thaliana) gi|18254401|gb|AAL66747 [ 15240084 NP_199220.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17752103 CHROM_POS_END:17754899 } -=| MIDDLE_POINT:17753501 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 229 305 1 1550 485 XLS3_Contig778 AT4G12560 F-box family protein, contains F-box domain Pfam:PF00646 [ 30682162 NP_192993.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7441812 CHROM_POS_END:7443154 } -=| MIDDLE_POINT:7442483 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.18 29 81 272 1 905 413 XLS3_Contig779 AT2G20210 leucine-rich repeat family protein, contains leucine rich repeat (LRR) domains, Pfam:PF00560 [ 42569177 NP_179611.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8728687 CHROM_POS_END:8732123 } -=| MIDDLE_POINT:8730405 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.73 40 163 405 1 1344 604 XLS3_Contig780 AT5G19440 cinnamyl-alcohol dehydrogenase, putative (CAD), similar to cinnamyl-alcohol dehydrogenase, Eucalyptus gunnii (GI:1143445), apple tree, PIR:T16995 [ 15239741 NP_197445.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6556495 CHROM_POS_END:6558125 } -=| MIDDLE_POINT:6557310 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.9 59 171 286 1 967 326 XLS3_Contig781 AT3G52380 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative, similar to chloroplast RNA-binding protein (cp33) GB:BAA06523 (Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539 (1995)) [ 15231200 NP_190806.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19432597 CHROM_POS_END:19433833 } -=| MIDDLE_POINT:19433215 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.78 50 151 297 1 923 329 XLS3_Contig782 no_hits_found 0 0 XLS3_Contig783 AT4G25680 expressed protein [ AT4G25680 15235955 NP_194298.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:13088434 CHROM_POS_END:13089961 } -=| MIDDLE_POINT:13089197 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.91 71 161 224 1 991 252 XLS3_Contig784 AT5G64300 similar to riboflavin biosynthesis protein, putative [Arabidopsis thaliana] (TAIR:At2g22450.1) [ 79547445 NP_201235.4 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:25735685 CHROM_POS_END:25738016 } -=| MIDDLE_POINT:25736850 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 321 457 1 1417 543 XLS3_Contig785 AT3G51270 RIO1 family protein, contains Pfam profile PF01163: RIO1 family [ 15230437 NP_190695.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19044830 CHROM_POS_END:19047751 } -=| MIDDLE_POINT:19046290 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 220 264 1 934 472 XLS3_Contig786 AT1G71380 glycosyl hydrolase family 9 protein, similar to beta-glucanase GB:AAB72171 [ 15217446 NP_177294.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26903651 CHROM_POS_END:26905411 } -=| MIDDLE_POINT:26904531 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 216 304 1 959 484 XLS3_Contig787 AT5G09390 CD2-binding protein-related, similar to CD2 cytoplasmic domain binding protein (Homo sapiens) GI:3983427 [ 18415962 NP_568211.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2913592 CHROM_POS_END:2915804 } -=| MIDDLE_POINT:2914698 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.61 51 132 257 1 950 351 XLS3_Contig788 AT3G26040 transferase family protein, similar to deacetylvindoline 4-O-acetyltransferase (Catharanthus roseus)(GI:4091808)(PMID:9681034), alcohol acyltransferase (Fragaria x ananassa)(GI:10121328)(PMID:10810141) [ 15230978 NP_189233.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9520978 CHROM_POS_END:9522306 } -=| MIDDLE_POINT:9521642 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.35 36 102 281 1 895 442 XLS3_Contig789 AT4G02340 epoxide hydrolase, putative, similar to epoxide hydrolases from Glycine max GI:2764806, Solanum tuberosum GI:407938 [ 18411917 NP_567228.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1035722 CHROM_POS_END:1037403 } -=| MIDDLE_POINT:1036562 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.79 56 132 234 1 736 324 XLS3_Contig790 no_hits_found 0 0 XLS3_Contig791 AT5G50840 expressed protein [ AT5G50840 42573650 NP_974921.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:20703129 CHROM_POS_END:20705965 } -=| MIDDLE_POINT:20704547 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.38 43 107 248 1 901 405 XLS3_Contig792 AT1G34120 inositol polyphosphate 5-phosphatase I (IP5PI), nearly identical to inositol polyphosphate 5-phosphatase I (Arabidopsis thaliana) GI:10444261 [ 30693006 NP_849745.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:12426809 CHROM_POS_END:12429504 } -=| MIDDLE_POINT:12428156 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.58 50 111 220 1 910 590 XLS3_Contig793 AT4G22860 expressed protein [ AT4G22860 42567043 NP_194017.3 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11997746 CHROM_POS_END:12001292 } -=| MIDDLE_POINT:11999519 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.4 37 106 285 1 886 509 XLS3_Contig794 AT5G41040 transferase family protein, similar to hypersensitivity-related gene product HSR201 - Nicotiana tabacum, EMBL:X95343 [ 30693723 NP_851111.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:16448676 CHROM_POS_END:16450314 } -=| MIDDLE_POINT:16449495 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.93 73 170 232 1 879 457 XLS3_Contig795 AT2G45510 cytochrome P450, putative [ AT2G45510 15225499 NP_182075.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18760159 CHROM_POS_END:18762018 } -=| MIDDLE_POINT:18761088 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.69 47 134 285 1 891 511 XLS3_Contig796 AT3G51250 senescence/dehydration-associated protein-related, similar to senescence-associated protein 12 (Hemerocallis hybrid cultivar) gi|3551958|gb|AAC34857 [ 15230434 NP_190693.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19039206 CHROM_POS_END:19041421 } -=| MIDDLE_POINT:19040313 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.76 47 157 328 1 901 463 XLS3_Contig797 AT5G40230 nodulin-related, low similarity to MtN21 (Medicago truncatula) GI:2598575 [ 15242612 NP_198839.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16097042 CHROM_POS_END:16098963 } -=| MIDDLE_POINT:16098002 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.55 39 117 293 1 915 370 XLS3_Contig798 AT5G53000 protein phosphatase 2A-associated 46 kDa protein / PP2A regulatory subunit (TAP46), identical to PP2A regulatory subunit (46 kDa protein phosphatase 2A-associated protein) (TAP46) (Arabidopsis thaliana) GI:5107033 [ 18423459 NP_568783.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21502880 CHROM_POS_END:21505095 } -=| MIDDLE_POINT:21503987 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 239 355 1 1181 405 XLS3_Contig799 AT1G55360 expressed protein, contains Pfam profile PF03080: Arabidopsis proteins of unknown function [ 15222707 NP_175933.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20670192 CHROM_POS_END:20672168 } -=| MIDDLE_POINT:20671180 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.95 67 173 257 1 1001 422 XLS3_Contig800 AT3G01910 sulfite oxidase, putative, similar to sulfite oxidase GB:3212610 SP|P07850 (Gallus gallus), Moco containing protein (Oryza sativa (japonica cultivar-group)) GI:22759584 [ 15232230 NP_186840.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:314926 CHROM_POS_END:317281 } -=| MIDDLE_POINT:316103 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 230 290 1 1016 393 XLS3_Contig801 AT2G22430 homeobox-leucine zipper protein 6 (HB-6) / HD-ZIP transcription factor 6, identical to homeobox-leucine zipper protein ATHB-6 (HD-ZIP protein ATHB-6) (SP:P46668) (Arabidopsis thaliana) [ 18399966 NP_565536.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9533550 CHROM_POS_END:9534692 } -=| MIDDLE_POINT:9534121 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.55 61 120 194 1 1058 311 XLS3_Contig802 AT2G41810 expressed protein, contains Pfam profile PF04862: Protein of unknown function, DUF642 [ 15227439 NP_181712.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17446492 CHROM_POS_END:17448374 } -=| MIDDLE_POINT:17447433 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.99 67 174 257 1 852 370 XLS3_Contig803 AT5G04310 pectate lyase family protein, similar to pectate lyase GP:14531296 from (Fragaria x ananassa) [ 42567636 NP_196051.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1203357 CHROM_POS_END:1207353 } -=| MIDDLE_POINT:1205355 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 190 293 1 984 518 XLS3_Contig804 AT1G16610 arginine/serine-rich protein, putative (SR45), similar to arginine/serine-rich protein GI:6601502 from (Arabidopsis thaliana) [ 15219287 NP_173107.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:5675918 CHROM_POS_END:5678679 } -=| MIDDLE_POINT:5677298 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.86 64 186 288 1 978 414 XLS3_Contig805 AT1G08200 expressed protein [ AT1G08200 18390863 NP_563807.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2574256 CHROM_POS_END:2576606 } -=| MIDDLE_POINT:2575431 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 89 273 305 1 988 389 XLS3_Contig806 AT5G54080 homogentisate 1,2-dioxygenase / homogentisicase/homogentisate oxygenase / homogentisic acid oxidase (HGO), identical to SP|Q9ZRA2 Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (Homogentisicase) (Homogentisate oxygenase) (Homogentisic acid oxidase) {Arabidopsis thaliana} [ 30696407 NP_851187.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21963146 CHROM_POS_END:21965296 } -=| MIDDLE_POINT:21964221 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 213 268 1 888 461 XLS3_Contig807 AT5G23340 expressed protein [ AT5G23340 15237286 NP_197725.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7856317 CHROM_POS_END:7857986 } -=| MIDDLE_POINT:7857151 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 186 268 1 960 405 XLS3_Contig808 AT2G41190 amino acid transporter family protein, low similarity to vesicular GABA transporter (Rattus norvegicus) GI:2587061 [ 18405629 NP_030664.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17174639 CHROM_POS_END:17177223 } -=| MIDDLE_POINT:17175931 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.74 54 149 271 1 929 536 XLS3_Contig809 AT5G67030 zeaxanthin epoxidase (ZEP) (ABA1), identical to GI:9857296 AtABA1 [ 30698272 NP_851285.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:26770971 CHROM_POS_END:26774316 } -=| MIDDLE_POINT:26772643 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.81 60 144 238 1 931 667 XLS3_Contig810 AT5G28040 expressed protein, contains Pfam profile: PF04504 protein of unknown function, DUF573 [ 15241123 NP_198156.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:10037658 CHROM_POS_END:10038941 } -=| MIDDLE_POINT:10038299 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.46 53 83 154 1 971 427 XLS3_Contig811 AT5G25170 expressed protein [ AT5G25170 18420889 NP_568467.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8693260 CHROM_POS_END:8694441 } -=| MIDDLE_POINT:8693850 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.67 79 115 144 1 1003 218 XLS3_Contig812 AT2G29350 tropinone reductase, putative / tropine dehydrogenase, putative, similar to tropinone reductase SP:P50165 from (Datura stramonium) [ 15227075 NP_180496.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:12608113 CHROM_POS_END:12609299 } -=| MIDDLE_POINT:12608706 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.75 67 136 201 1 820 269 XLS3_Contig813 AT3G21360 expressed protein [ AT3G21360 15232542 NP_188773.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7522871 CHROM_POS_END:7524042 } -=| MIDDLE_POINT:7523456 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.58 57 114 197 1 901 330 XLS3_Contig814 AT2G34520 ribosomal protein S14 mitochondrial family protein, identical to ribosomal protein S14 {Arabidopsis thaliana} NCBI_gi:4583554 [ 30686095 NP_850232.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14555297 CHROM_POS_END:14555791 } -=| MIDDLE_POINT:14555544 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.32 67 65 97 1 968 164 XLS3_Contig815 AT3G07050 GTP-binding family protein, contains Pfam domain, PF01926: GTPase of unknown function [ 15231373 NP_187361.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2229608 CHROM_POS_END:2232285 } -=| MIDDLE_POINT:2230946 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 202 270 1 900 582 XLS3_Contig816 AT5G06110 DNAJ heat shock N-terminal domain-containing protein / cell division protein-related, similar to GlsA (Volvox carteri f. nagariensis) GI:4633129 [ 15239928 NP_196229.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1841010 CHROM_POS_END:1843001 } -=| MIDDLE_POINT:1842005 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.73 67 141 210 1 957 663 XLS3_Contig817 AT4G37210 tetratricopeptide repeat (TPR)-containing protein, low similarity to SP|Q02508 Protein HGV2 Halocynthia roretzi [ 18419996 NP_568019.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17512370 CHROM_POS_END:17514415 } -=| MIDDLE_POINT:17513392 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.8 54 161 296 1 927 492 XLS3_Contig818 AT1G71070 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein, similar to glucosaminyl (N-acetyl) transferase GB:4758422 from (Homo sapiens) [ 18409754 NP_565009.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26811102 CHROM_POS_END:26812814 } -=| MIDDLE_POINT:26811958 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.94 60 162 266 1 1016 395 XLS3_Contig819 AT4G22990 SPX (SYG1/Pho81/XPR1) domain-containing protein, low similarity to SP|P51564 Tetracycline resistance protein, class H {Pasteurella multocida}, SP|P39843 Multidrug resistance protein 2 (Multidrug-efflux transporter 2) {Bacillus subtilis} [ 18416049 NP_567674.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12048251 CHROM_POS_END:12050995 } -=| MIDDLE_POINT:12049623 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 221 284 1 952 699 XLS3_Contig820 AT4G39220 RER1A protein, identical to SP|O48670 RER1A protein (AtRER1A) {Arabidopsis thaliana} [ 15234975 NP_195633.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18264274 CHROM_POS_END:18265525 } -=| MIDDLE_POINT:18264899 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.69 62 118 188 1 888 191 XLS3_Contig821 AT5G61240 similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:At1g13910.1) [ 79543203 NP_200932.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:24646711 CHROM_POS_END:24649184 } -=| MIDDLE_POINT:24647947 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 87 210 239 1 973 326 XLS3_Contig822 AT1G68570 proton-dependent oligopeptide transport (POT) family protein, contains Pfam profile: PF00854 POT family [ 15221439 NP_177024.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:25750474 CHROM_POS_END:25753773 } -=| MIDDLE_POINT:25752123 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.82 54 155 284 1 859 596 XLS3_Contig823 AT3G54020 phosphatidic acid phosphatase-related / PAP2-related [ AT3G54020 15232394 NP_190970.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20017076 CHROM_POS_END:20018998 } -=| MIDDLE_POINT:20018037 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.89 79 152 192 1 947 305 XLS3_Contig824 AT1G21720 20S proteasome beta subunit C1 (PBC1) (PRCT), almost identical to GB:AAC32069 from (Arabidopsis thaliana), EST gb|T76747 comes from this gene [ 18395025 NP_564149.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7626383 CHROM_POS_END:7628059 } -=| MIDDLE_POINT:7627221 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 91 186 204 1 760 204 XLS3_Contig825 AT5G25220 homeobox protein knotted-1 like 3 (KNAT3), identical to homeobox protein knotted-1 like 3 (KNAT3) SP:P48000 from (Arabidopsis thaliana) [ 15238743 NP_197904.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:8736211 CHROM_POS_END:8738118 } -=| MIDDLE_POINT:8737164 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 60 273 450 1 1629 431 XLS3_Contig826 AT1G72340 eukaryotic translation initiation factor 2B family protein / eIF-2B family protein, similar to SP|Q64270 Translation initiation factor eIF-2B alpha subunit {Rattus norvegicus} [ 18410057 NP_565041.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:27240560 CHROM_POS_END:27242144 } -=| MIDDLE_POINT:27241352 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.98 71 193 270 1 949 382 XLS3_Contig827 AT5G24360 protein kinase family protein / Ire1 homolog-1 (IRE1-1), identical to Ire1 homolog-1 (Arabidopsis thaliana) GI:15277137 [ 18420784 NP_568444.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8316630 CHROM_POS_END:8319830 } -=| MIDDLE_POINT:8318230 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 60 286 469 1 1495 881 XLS3_Contig828 AT3G06580 galactokinase (GAL1), identical to galactokinase (Galactose kinase) (Arabidopsis thaliana) SWISS-PROT:Q9SEE5 [ 15230749 NP_187310.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2049147 CHROM_POS_END:2051873 } -=| MIDDLE_POINT:2050510 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 217 283 1 1005 496 XLS3_Contig829 AT5G08415 lipoic acid synthase family protein, similar to lipoic acid synthase from Arabidopsis thaliana (gi:3928758), from Mus musculus (gi:14669826) Pfam profile PF04055: radical SAM domain protein [ 18415808 NP_568196.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2710984 CHROM_POS_END:2713102 } -=| MIDDLE_POINT:2712043 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.9 65 160 246 1 997 394 XLS3_Contig830 AT5G22130 mannosyltransferase family protein, similar to mannosyltransferase from Rattus norvegicus (GI:11414877), Homo sapiens (GI:11414879) [ 22326970 NP_680199.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7337489 CHROM_POS_END:7339834 } -=| MIDDLE_POINT:7338661 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.79 78 133 169 1 918 450 XLS3_Contig831 AT1G32060 phosphoribulokinase (PRK) / phosphopentokinase, nearly identical to SP|P25697 Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19) (Phosphopentokinase) (PRKASE) (PRK) {Arabidopsis thaliana} [ 15222551 NP_174486.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11532648 CHROM_POS_END:11534386 } -=| MIDDLE_POINT:11533517 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 231 288 1 914 395 XLS3_Contig832 AT2G22475 GRAM domain-containing protein / ABA-responsive protein-related, similar to ABA-responsive protein (Hordeum vulgare) GI:4103635 [ 18399985 NP_565538.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9548603 CHROM_POS_END:9551858 } -=| MIDDLE_POINT:9550230 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.63 53 132 248 1 913 299 XLS3_Contig833 AT3G14067 subtilase family protein, contains similarity to cucumisin-like serine protease GI:3176874 from (Arabidopsis thaliana) [ 22331076 NP_566473.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4658428 CHROM_POS_END:4660761 } -=| MIDDLE_POINT:4659594 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 58 174 296 1 954 777 XLS3_Contig834 AT4G36220 cytochrome P450 84A1 (CYP84A1) / ferulate-5-hydroxylase (FAH1), identical to Cytochrome P450 84A1 (Ferulate-5-hydroxylase) (SP|Q42600) (Arabidopsis thaliana) [ 15234332 NP_195345.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17137587 CHROM_POS_END:17139622 } -=| MIDDLE_POINT:17138604 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.9 67 156 232 1 974 520 XLS3_Contig835 AT5G62220 exostosin family protein, contains Pfam profile: PF03016 Exostosin family [ 15241759 NP_201028.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:25005682 CHROM_POS_END:25007235 } -=| MIDDLE_POINT:25006458 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 60 296 487 1 1547 517 XLS3_Contig836 AT1G71695 peroxidase 12 (PER12) (P12) (PRXR6), identical to SP|Q96520 Peroxidase 12 precursor (EC 1.11.1.7) (Atperox P12) (PRXR6) (ATP4a) {Arabidopsis thaliana} [ 15217539 NP_177313.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:26968021 CHROM_POS_END:26970219 } -=| MIDDLE_POINT:26969120 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.95 58 170 290 1 910 358 XLS3_Contig837 AT5G35160 endomembrane protein 70, putative, p76, Homo sapiens, EMBL:HSU81006 [ 15238407 NP_198366.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:13432184 CHROM_POS_END:13434151 } -=| MIDDLE_POINT:13433167 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.39 43 96 223 1 997 627 XLS3_Contig838 AT1G29660 GDSL-motif lipase/hydrolase family protein, low similarity to family II lipase EXL1 (Arabidopsis thaliana) GI:15054382 [ 15220512 NP_174259.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10371941 CHROM_POS_END:10373610 } -=| MIDDLE_POINT:10372775 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.96 68 164 239 1 938 364 XLS3_Contig839 AT3G14420 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative, similar to (S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate oxidase, GOX) (Short chain alpha-hydroxy acid oxidase) (Spinacia oleracea) SWISS-PROT:P05414 [ 15231850 NP_188060.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4821811 CHROM_POS_END:4823906 } -=| MIDDLE_POINT:4822858 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 86 182 210 1 826 367 XLS3_Contig840 AT3G02110 serine carboxypeptidase S10 family protein, similar to serine carboxypeptidase II (CP-MII) GB:CAA70815 (SP:P08818) (Hordeum vulgare) [ 15232847 NP_186860.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:370909 CHROM_POS_END:373644 } -=| MIDDLE_POINT:372276 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 256 348 1 1055 473 XLS3_Contig841 AT2G45580 cytochrome P450 family protein, contains Pfam profile: PF00067 cytochrome p450 [ 30690070 NP_182082.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18789462 CHROM_POS_END:18791360 } -=| MIDDLE_POINT:18790411 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.55 38 114 297 1 934 515 XLS3_Contig842 AT3G48270 cytochrome P450 71A26, putative (CYP71A26), identical to Cytochrome P450 71A26 (SP:Q9STK7) {Arabidopsis thaliana} [ 22331672 NP_680106.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17887556 CHROM_POS_END:17889158 } -=| MIDDLE_POINT:17888357 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.52 36 107 296 1 930 489 XLS3_Contig843 AT3G59530 strictosidine synthase family protein, similar to strictosidine synthase (Rauvolfia serpentina)(SP|P15324) [ 15231703 NP_191512.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:22004687 CHROM_POS_END:22006141 } -=| MIDDLE_POINT:22005414 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 198 289 1 953 403 XLS3_Contig844 AT3G24350 syntaxin, putative (SYP32), similar to SP|Q9FFK1 Syntaxin 31 (AtSYP31) (AtSED5) {Arabidopsis thaliana}, syntaxin 5A GB:NP_003155 from (Homo sapiens) (J. Mol. Neurosci. (1997) 8 (2), 159-161) [ 30687459 NP_189078.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8837740 CHROM_POS_END:8839409 } -=| MIDDLE_POINT:8838574 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.5 58 114 194 1 965 347 XLS3_Contig845 no_hits_found 0 0 XLS3_Contig846 AT1G52870 peroxisomal membrane protein-related, contains weak similarity to Swiss-Prot:Q07066 22 kDa peroxisomal membrane protein (Rattus norvegicus) [ 30695366 NP_564615.3 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:19689524 CHROM_POS_END:19691346 } -=| MIDDLE_POINT:19690435 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.95 62 179 285 1 922 366 XLS3_Contig847 AT2G44730 expressed protein, similar to 6b-interacting protein 1 (NtSIP1) (Nicotiana tabacum) GI:18149189 [ 15224948 NP_182001.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18444522 CHROM_POS_END:18445640 } -=| MIDDLE_POINT:18445081 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.44 31 130 415 1 1327 372 XLS3_Contig848 AT4G17150 expressed protein, similar to expressed protein [Arabidopsis thaliana] (TAIR:At3g23540.1) [ 79476960 NP_193448.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9638602 CHROM_POS_END:9641659 } -=| MIDDLE_POINT:9640130 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 186 222 1 969 502 XLS3_Contig849 AT4G20820 FAD-binding domain-containing protein, similar to SP|P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) (Eschscholzia californica) [ 15233411 NP_193814.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11150171 CHROM_POS_END:11151769 } -=| MIDDLE_POINT:11150970 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.85 52 150 285 1 878 532 XLS3_Contig850 AT5G05340 peroxidase, putative, similar to peroxidase (Nicotiana tabacum) gi|5381253|dbj|BAA82306 [ 15239075 NP_196153.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1579143 CHROM_POS_END:1580820 } -=| MIDDLE_POINT:1579981 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 193 258 1 875 324 XLS3_Contig851 AT2G44230 expressed protein [ AT2G44230 18406488 NP_030961.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18293613 CHROM_POS_END:18295323 } -=| MIDDLE_POINT:18294468 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.65 48 134 279 1 875 542 XLS3_Contig852 AT2G37770 similar to aldo/keto reductase family protein [Arabidopsis thaliana] (TAIR:At3g53880.1) [ 79324628 NP_001031505.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:15841966 CHROM_POS_END:15843737 } -=| MIDDLE_POINT:15842851 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.36 53 59 111 1 940 315 XLS3_Contig853 AT3G47340 asparagine synthetase 1 (glutamine-hydrolyzing) / glutamine-dependent asparagine synthetase 1 (ASN1), identical to SP|P49078 Asparagine synthetase (glutamine-hydrolyzing) (EC 6.3.5.4) (Glutamine- dependent asparagine synthetase) {Arabidopsis thaliana} [ 15232775 NP_190318.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17449121 CHROM_POS_END:17452028 } -=| MIDDLE_POINT:17450574 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 84 251 298 1 1398 584 XLS3_Contig854 no_hits_found 0 0 XLS3_Contig855 AT3G08030 expressed protein, contains Pfam profile PF04862: Protein of unknown function, DUF642 [ 18398135 NP_566328.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2564197 CHROM_POS_END:2565825 } -=| MIDDLE_POINT:2565011 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 261 358 1 1205 365 XLS3_Contig856 AT1G60600 UbiA prenyltransferase family protein, contains Pfam profile PF01040: UbiA prenyltransferase family [ 30696438 NP_176259.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:22328472 CHROM_POS_END:22330060 } -=| MIDDLE_POINT:22329266 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.69 70 126 180 1 861 287 XLS3_Contig857 AT4G02600 seven transmembrane MLO family protein / MLO-like protein 1 (MLO1), identical to MLO-like protein 1 (MLO protein homolog 1) (Arabidopsis thaliana) SWISS-PROT:O49621 [ 15235429 NP_192169.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1144141 CHROM_POS_END:1147156 } -=| MIDDLE_POINT:1145648 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.91 66 179 268 1 1010 526 XLS3_Contig858 AT4G31940 cytochrome P450, putative, cytochrome P450 monooxygenase, Pisum sativum, PATCHX:G894153 [ 15236586 NP_194922.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15452046 CHROM_POS_END:15453972 } -=| MIDDLE_POINT:15453009 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.62 40 118 295 1 924 524 XLS3_Contig859 AT3G22590 RNA pol II accessory factor Cdc73 family protein, contains Pfam PF05179: RNA pol II accessory factor, Cdc73 family [ 15228799 NP_188898.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8004006 CHROM_POS_END:8005459 } -=| MIDDLE_POINT:8004732 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.79 52 157 301 1 878 415 XLS3_Contig860 AT1G53910 AP2 domain-containing protein RAP2.12 (RAP2.12), identical to AP2 domain containing protein GI:2281649 from (Arabidopsis thaliana) [ 15220971 NP_175794.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:20138910 CHROM_POS_END:20140249 } -=| MIDDLE_POINT:20139579 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.62 47 142 301 1 965 358 XLS3_Contig861 AT5G63520 expressed protein, contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) [ 79546803 NP_201157.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:25443526 CHROM_POS_END:25446319 } -=| MIDDLE_POINT:25444922 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.5 41 110 263 1 918 519 XLS3_Contig862 AT5G19780 tubulin alpha-3/alpha-5 chain (TUA5), nearly identical to SP|P20363 Tubulin alpha-3/alpha-5 chain {Arabidopsis thaliana} [ 15241179 NP_197479.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6687214 CHROM_POS_END:6688928 } -=| MIDDLE_POINT:6688071 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 96 437 451 1 1600 450 XLS3_Contig863 AT1G03760 prefoldin subunit family protein, contains similarity to Swiss-Prot:O94763 RNA polymerase II subunit 5-mediating protein (RPB5-mediating protein) (Homo sapiens) [ 30678662 NP_171872.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:941210 CHROM_POS_END:943319 } -=| MIDDLE_POINT:942264 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.56 54 118 216 1 919 391 XLS3_Contig864 AT3G46130 myb family transcription factor (MYB48), contains Pfam profile: PF00249 myb-like DNA-binding domain [ 15231343 NP_190199.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:16956418 CHROM_POS_END:16957361 } -=| MIDDLE_POINT:16956889 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.5 55 116 208 1 1201 256 XLS3_Contig865 AT1G78080 AP2 domain-containing transcription factor RAP2.4, identical to AP2 domain containing protein GI:2281633 from (Arabidopsis thaliana) [ 15218204 NP_177931.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:29369683 CHROM_POS_END:29370687 } -=| MIDDLE_POINT:29370185 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.54 54 126 230 1 902 334 XLS3_Contig866 AT5G19780 tubulin alpha-3/alpha-5 chain (TUA5), nearly identical to SP|P20363 Tubulin alpha-3/alpha-5 chain {Arabidopsis thaliana} [ 15241179 NP_197479.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6687214 CHROM_POS_END:6688928 } -=| MIDDLE_POINT:6688071 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 97 281 289 1 927 450 XLS3_Contig867 AT5G14440 similar to surfeit locus protein 2 family protein / SURF2 family protein [Arabidopsis thaliana] (TAIR:At5g40570.1) [ 79513326 NP_196948.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4656068 CHROM_POS_END:4657810 } -=| MIDDLE_POINT:4656939 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.65 47 135 282 1 999 292 XLS3_Contig868 AT1G43710 serine decarboxylase, identical to serine decarboxylase (Arabidopsis thaliana) GI:15011302 [ 15218445 NP_175036.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16488974 CHROM_POS_END:16490738 } -=| MIDDLE_POINT:16489856 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 208 272 1 934 482 XLS3_Contig869 no_hits_found 0 0 XLS3_Contig870 AT5G49460 ATP-citrate synthase, putative / ATP-citrate (pro-S-)-lyase, putative / citrate cleavage enzyme, putative, strong similarity to ATP:citrate lyase (Capsicum annuum) GI:13160653 [ 15239897 NP_199757.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20072274 CHROM_POS_END:20075421 } -=| MIDDLE_POINT:20073847 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 93 254 273 1 889 608 XLS3_Contig871 AT3G24150 expressed protein [ AT3G24150 15230072 NP_189057.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8724280 CHROM_POS_END:8725593 } -=| MIDDLE_POINT:8724936 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.57 46 122 263 1 1128 343 XLS3_Contig872 AT5G66320 zinc finger (GATA type) family protein [ AT5G66320 15239343 NP_201433.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:26513434 CHROM_POS_END:26514535 } -=| MIDDLE_POINT:26513984 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.43 42 125 294 1 947 339 XLS3_Contig873 AT5G59580 UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase [ 30697251 NP_200766.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:24023465 CHROM_POS_END:24024915 } -=| MIDDLE_POINT:24024190 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.53 39 127 318 1 1056 453 XLS3_Contig874 no_hits_found 0 0 XLS3_Contig875 AT4G13110 BSD domain-containing protein, contains Pfam profile PF03909: BSD domain [ 18413928 NP_567396.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7641504 CHROM_POS_END:7642454 } -=| MIDDLE_POINT:7641979 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.6 50 126 251 1 866 316 XLS3_Contig876 AT4G18070 expressed protein [ AT4G18070 30684291 NP_849405.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:10030851 CHROM_POS_END:10032341 } -=| MIDDLE_POINT:10031596 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.14 24 71 290 1 979 262 XLS3_Contig877 AT5G53390 expressed protein [ AT5G53390 30696326 NP_200151.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21674177 CHROM_POS_END:21676433 } -=| MIDDLE_POINT:21675305 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.6 44 115 256 1 845 486 XLS3_Contig878 AT3G11620 expressed protein, similar to unknown protein GB:AAF00672 (Arabidopsis thaliana) [ 30681809 NP_850560.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:3669557 CHROM_POS_END:3671740 } -=| MIDDLE_POINT:3670648 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.6 56 108 191 1 884 312 XLS3_Contig879 AT5G05760 syntaxin 31 (SYP31) / SED5, identical to SP|Q9FFK1 Syntaxin 31 (AtSYP31) (AtSED5) {Arabidopsis thaliana} [ 15239228 NP_196195.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1729112 CHROM_POS_END:1730904 } -=| MIDDLE_POINT:1730008 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.82 61 173 283 1 912 336 XLS3_Contig880 AT5G06710 homeobox-leucine zipper protein 14 (HAT14) / HD-ZIP protein 14, contains similarity to homeodomain leucine zipper protein [ 22326632 NP_196289.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2068306 CHROM_POS_END:2070285 } -=| MIDDLE_POINT:2069295 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.42 42 129 301 1 908 336 XLS3_Contig881 AT1G45000 26S proteasome regulatory complex subunit p42D, putative, similar to 26S proteasome regulatory complex subunit p42D (Drosophila melanogaster) gi|6434958|gb|AAF08391 [ 15219503 NP_175120.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17011660 CHROM_POS_END:17014047 } -=| MIDDLE_POINT:17012853 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 91 257 281 1 969 399 XLS3_Contig882 AT5G67080 protein kinase family protein, contains protein kinase domain, Pfam:PF00069 [ 15240194 NP_201509.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:26789952 CHROM_POS_END:26790986 } -=| MIDDLE_POINT:26790469 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.51 44 110 246 1 1015 344 XLS3_Contig883 AT2G04940 scramblase-related, weak similarity to Phospholipid scramblase 1 (PL scramblase 1) (Ca(2 )-dependent phospholipid scramblase 1) (Transplantability associated protein 1) (TRA1) (NOR1) (Swiss-Prot:Q9JJ00) (Mus musculus) [ 18395909 NP_565319.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1736668 CHROM_POS_END:1740251 } -=| MIDDLE_POINT:1738459 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.53 59 108 182 1 1086 392 XLS3_Contig884 AT4G21160 zinc finger and C2 domain protein (ZAC), identical to zinc finger and C2 domain protein GI:9957238 from (Arabidopsis thaliana) [ 18415638 NP_567620.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:11284704 CHROM_POS_END:11286542 } -=| MIDDLE_POINT:11285623 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.55 75 98 129 1 871 337 XLS3_Contig885 AT3G54540 ABC transporter family protein, similar to ABC50 GI:10863747 from (Rattus norvegicus) [ 18410084 NP_567001.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20201371 CHROM_POS_END:20203542 } -=| MIDDLE_POINT:20202456 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.55 57 116 202 1 953 723 XLS3_Contig886 AT4G29490 Xaa-Pro dipeptidase, putative / prolidase, putative [ AT4G29490 15233604 NP_194678.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:14487949 CHROM_POS_END:14490162 } -=| MIDDLE_POINT:14489055 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 233 300 1 1149 333 XLS3_Contig887 AT1G79220 mitochondrial transcription termination factor family protein / mTERF family protein, weak similarity to mtDBP protein (Paracentrotus lividus) GI:4584695 [ 18412304 NP_565202.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:29804120 CHROM_POS_END:29805319 } -=| MIDDLE_POINT:29804719 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.59 56 62 110 1 931 399 XLS3_Contig888 AT5G35830 ankyrin repeat family protein, contains ankyrin repeats, Pfam:PF00023 [ 15239209 NP_198432.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14017543 CHROM_POS_END:14018646 } -=| MIDDLE_POINT:14018094 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.15 35 47 134 1 1146 282 XLS3_Contig889 AT1G22970 expressed protein [ AT1G22970 15219987 NP_173710.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8130829 CHROM_POS_END:8132188 } -=| MIDDLE_POINT:8131508 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.76 53 151 283 1 928 357 XLS3_Contig890 AT1G06210 VHS domain-containing protein / GAT domain-containing protein, weak similarity to SP|Q9UJY5 ADP-ribosylation factor binding protein GGA1 {Homo sapiens} [ 18390626 NP_563762.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1897566 CHROM_POS_END:1898985 } -=| MIDDLE_POINT:1898275 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.86 55 163 293 1 993 383 XLS3_Contig891 AT5G24760 alcohol dehydrogenase, putative, similar to alcohol dehydrogenase from Solanum tuberosum (SP|p14673) [ 18420834 NP_568453.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:8495038 CHROM_POS_END:8497248 } -=| MIDDLE_POINT:8496143 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 206 292 1 975 381 XLS3_Contig892 AT5G25265 expressed protein [ AT5G25265 22327055 NP_680219.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8754797 CHROM_POS_END:8756858 } -=| MIDDLE_POINT:8755827 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 193 250 1 900 366 XLS3_Contig893 AT2G37160 similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:At3g53390.1) [ 79324554 NP_001031501.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:15616126 CHROM_POS_END:15619608 } -=| MIDDLE_POINT:15617867 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.72 56 136 240 1 903 544 XLS3_Contig894 AT5G48970 mitochondrial substrate carrier family protein, contains Pfam profile: PF00153 mitochondrial carrier protein [ 15239754 NP_199708.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19874254 CHROM_POS_END:19876600 } -=| MIDDLE_POINT:19875427 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 196 253 1 953 339 XLS3_Contig895 AT5G22650 expressed protein, non-consensus AT donor splice site at exon 3, AC acceptor splice site at exon 4 [ 30688577 NP_851056.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7534123 CHROM_POS_END:7536057 } -=| MIDDLE_POINT:7535090 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.48 41 125 299 1 922 306 XLS3_Contig896 no_hits_found 0 0 XLS3_Contig897 no_hits_found 0 0 XLS3_Contig898 AT3G51820 chlorophyll synthetase, putative, identical to gi:972938 putative chlorophyll synthetase from Arabidopsis thaliana [ 15231043 NP_190750.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19227278 CHROM_POS_END:19229911 } -=| MIDDLE_POINT:19228594 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 248 328 1 1064 387 XLS3_Contig899 AT5G16810 expressed protein [ AT5G16810 30686026 NP_197183.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5526863 CHROM_POS_END:5529881 } -=| MIDDLE_POINT:5528372 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.76 60 110 183 1 1038 418 XLS3_Contig900 AT1G22750 expressed protein [ AT1G22750 30688031 NP_849699.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:8050900 CHROM_POS_END:8052620 } -=| MIDDLE_POINT:8051760 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.36 32 79 241 1 871 247 XLS3_Contig901 AT5G53110 expressed protein [ AT5G53110 15238655 NP_200123.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21546248 CHROM_POS_END:21546970 } -=| MIDDLE_POINT:21546609 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.34 38 86 222 1 883 240 XLS3_Contig902 AT5G61510 NADP-dependent oxidoreductase, putative, similar to zeta-crystallin homolog TED2 from Zinnia elegans (gi:531096) [ 42568692 NP_200959.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:24754310 CHROM_POS_END:24756201 } -=| MIDDLE_POINT:24755255 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.85 67 151 225 1 936 406 XLS3_Contig903 AT1G69040 ACT domain containing protein (ACR4), low similarity to uridylyltransferase (Gluconacetobacter diazotrophicus) GI:17226253 [ 42572033 NP_974107.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:25961506 CHROM_POS_END:25963742 } -=| MIDDLE_POINT:25962624 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.99 75 175 231 1 974 455 XLS3_Contig904 AT5G35360 acetyl-CoA carboxylase, biotin carboxylase subunit (CAC2), identical to acetyl-CoA carboxylase, biotin carboxylase subunit (CAC2) (Arabidopsis thaliana) GI:1905876 [ 15238482 NP_198386.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:13601530 CHROM_POS_END:13605498 } -=| MIDDLE_POINT:13603514 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 306 381 1 1292 537 XLS3_Contig905 AT1G08090 high-affinity nitrate transporter (ACH1), identical to trans-membrane nitrate transporter protein AtNRT2:1 (Arabidopsis thaliana) GI:3747058, high-affinity nitrate transporter ACH1 (Arabidopsis thaliana) GI:3608362 [ 15223123 NP_172288.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2524136 CHROM_POS_END:2525917 } -=| MIDDLE_POINT:2525026 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 229 280 1 883 530 XLS3_Contig906 AT3G03340 LUC7 N_terminus domain-containing protein, contains Pfam domain PF03194: LUC7 N_terminus [ 30678827 NP_566203.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:786446 CHROM_POS_END:789769 } -=| MIDDLE_POINT:788107 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 238 289 1 912 402 XLS3_Contig907 AT5G13710 sterol 24-C-methyltransferase, putative, similar to SP:P25087 Sterol 24-C-methyltransferase, Delta(24)-sterol C- methyltransferase, Saccharomyces cerevisiae [ 15240691 NP_196875.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4424051 CHROM_POS_END:4426869 } -=| MIDDLE_POINT:4425460 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 219 256 1 947 336 XLS3_Contig908 AT3G12270 protein arginine N-methyltransferase family protein, similar to protein arginine N-methyltransferase 3 from {Rattus norvegicus} SP|O70467, {Homo sapiens} SP|O60678 [ 15230446 NP_187835.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3910661 CHROM_POS_END:3913129 } -=| MIDDLE_POINT:3911895 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.51 40 111 277 1 892 590 XLS3_Contig909 AT2G20190 CLIP-associating protein (CLASP) -related, similar to CLIP-associating protein CLASP2 (GI:13508651) (Rattus norvegicus) [ 42570286 NP_849997.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8718943 CHROM_POS_END:8725894 } -=| MIDDLE_POINT:8722418 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 178 272 1 1141 1439 XLS3_Contig910 AT4G29040 26S proteasome AAA-ATPase subunit (RPT2a), almost identical to 26S proteasome AAA-ATPase subunit RPT2a (GI:6652880) {Arabidopsis thaliana} [ 15235544 NP_194633.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:14312375 CHROM_POS_END:14314392 } -=| MIDDLE_POINT:14313383 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 94 347 366 1 1203 443 XLS3_Contig911 AT1G16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein, contains Pfam domain, PF03348: TMS membrane protein/tumour differentially expressed protein (TDE) [ 15219147 NP_173069.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5540899 CHROM_POS_END:5542664 } -=| MIDDLE_POINT:5541781 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 86 319 368 1 1259 412 XLS3_Contig912 AT5G39960 GTP-binding family protein, contains Pfam domain, PF01926: GTPase of unknown function [ 30693524 NP_198812.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16011423 CHROM_POS_END:16014048 } -=| MIDDLE_POINT:16012735 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 63 228 360 1 1462 616 XLS3_Contig913 AT5G05170 cellulose synthase, catalytic subunit (Ath-B), nearly identical to gi:2827143, cellulose synthase, catalytic subunit (Ath-B) [ 15238454 NP_196136.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1530402 CHROM_POS_END:1535091 } -=| MIDDLE_POINT:1532746 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.75 63 139 220 1 928 1065 XLS3_Contig914 AT2G46240 IQ domain-containing protein / BAG domain-containing protein, contains Pfam profiles PF00612: IQ calmodulin-binding motif, PF02179: BAG (Apoptosis regulator Bcl-2 protein) domain [ 15225945 NP_182147.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18993659 CHROM_POS_END:18996900 } -=| MIDDLE_POINT:18995279 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.18 22 96 431 1 1184 1043 XLS3_Contig915 no_hits_found 0 0 XLS3_Contig916 AT1G53590 C2 domain-containing protein [ AT1G53590 18404532 NP_564637.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20000224 CHROM_POS_END:20003795 } -=| MIDDLE_POINT:20002009 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.7 69 120 173 1 920 751 XLS3_Contig917 AT1G05620 inosine-uridine preferring nucleoside hydrolase family protein, similar to Chain A, Crystal Structure Of Nucleoside Hydrolase From Leishmania MajorGI:8569431 [ 18390550 NP_563745.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1679285 CHROM_POS_END:1681526 } -=| MIDDLE_POINT:1680405 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.63 79 117 147 1 900 322 XLS3_Contig918 no_hits_found 0 0 XLS3_Contig919 AT2G04305 magnesium transporter CorA-like protein-related [ AT2G04305 22325463 NP_178511.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1501676 CHROM_POS_END:1503445 } -=| MIDDLE_POINT:1502560 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 252 347 1 1378 434 XLS3_Contig920 AT3G23430 phosphate transporter, putative (PHO1), identical to PHO1 protein (Arabidopsis thaliana) GI:20069032 [ 22331284 NP_188985.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8387825 CHROM_POS_END:8393249 } -=| MIDDLE_POINT:8390537 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 179 258 1 1303 782 XLS3_Contig921 AT3G51670 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein, similar to polyphosphoinositide binding protein Ssh2p (GI:2739046) {Glycine max} [ 15230555 NP_190735.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19179891 CHROM_POS_END:19181827 } -=| MIDDLE_POINT:19180859 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 206 283 1 969 409 XLS3_Contig922 AT1G03270 expressed protein, contains Pfam profile PF01595: Domain of unknown function [ 42561648 NP_171826.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:799191 CHROM_POS_END:802436 } -=| MIDDLE_POINT:800813 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 211 276 1 941 499 XLS3_Contig923 AT5G67250 SKP1 interacting partner 2 (SKIP2), identical to SKP1 interacting partner 2 GI:10716949 from (Arabidopsis thaliana) [ 18425169 NP_569047.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26848903 CHROM_POS_END:26850486 } -=| MIDDLE_POINT:26849694 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 233 356 1 1704 527 XLS3_Contig924 AT5G19150 carbohydrate kinase family, contains Pfam profile PF01256: Carbohydrate kinase [ 18419840 NP_568369.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:6426282 CHROM_POS_END:6428404 } -=| MIDDLE_POINT:6427343 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.79 62 160 254 1 1002 365 XLS3_Contig925 no_hits_found 0 0 XLS3_Contig926 AT4G03030 kelch repeat-containing F-box family protein, contains Pfam profiles PF01344: Kelch motif, PF00646: F-box domain [ 22328264 NP_192212.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1335942 CHROM_POS_END:1337270 } -=| MIDDLE_POINT:1336606 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.76 59 144 241 1 994 442 XLS3_Contig927 AT1G47056 F-box family protein, [ AT1G47056 15220130 NP_175151.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17278543 CHROM_POS_END:17280099 } -=| MIDDLE_POINT:17279321 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.8 69 144 207 1 893 518 XLS3_Contig928 AT2G38570 expressed protein, [ AT2G38570 15224902 NP_181391.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16143932 CHROM_POS_END:16145495 } -=| MIDDLE_POINT:16144713 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.38 40 109 272 1 1263 302 XLS3_Contig929 AT1G36050 expressed protein [ AT1G36050 30693281 NP_564467.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:13451679 CHROM_POS_END:13454267 } -=| MIDDLE_POINT:13452973 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.28 55 62 112 1 884 386 XLS3_Contig930 AT1G74040 2-isopropylmalate synthase 1 (IMS1), identical to 2-isopropylmalate synthase (IMS1) (Arabidopsis thaliana) GI:12330687 [ 15221125 NP_177544.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:27845919 CHROM_POS_END:27849227 } -=| MIDDLE_POINT:27847573 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.97 76 174 228 1 925 631 XLS3_Contig931 AT1G51680 4-coumarate--CoA ligase 1 / 4-coumaroyl-CoA synthase 1 (4CL1), identical to SP|Q42524 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (4-coumaroyl-CoA synthase 1) {Arabidopsis thaliana} [ 15218002 NP_175579.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:19162675 CHROM_POS_END:19165132 } -=| MIDDLE_POINT:19163903 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 63 183 289 1 898 561 XLS3_Contig932 AT1G55120 beta-fructosidase, putative / beta-fructofuranosidase, putative, similar to beta-fructofuranosidase GI:402740 [ 18405222 NP_564676.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20570284 CHROM_POS_END:20572832 } -=| MIDDLE_POINT:20571558 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.81 55 143 260 1 1029 594 XLS3_Contig933 AT5G14250 COP9 signalosome complex subunit 3 / CSN complex subunit 3 (CSN3) / FUSCA protein (FUS11), CSN3, FUS11 [ 18417330 NP_568296.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4597973 CHROM_POS_END:4600564 } -=| MIDDLE_POINT:4599268 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.86 56 155 273 1 936 429 XLS3_Contig934 AT2G10940 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein, similar to proline-rich cell wall protein (Medicago sativa) GI:3818416 [ 18396941 NP_565348.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4318242 CHROM_POS_END:4319117 } -=| MIDDLE_POINT:4318679 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.38 80 68 85 1 482 291 XLS3_Contig935 AT5G17300 myb family transcription factor, similar to CCA1 (Arabidopsis thaliana) GI:4090569 [ 42567912 NP_568344.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5690437 CHROM_POS_END:5692437 } -=| MIDDLE_POINT:5691437 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.49 77 92 118 1 884 387 XLS3_Contig936 AT1G54310 expressed protein [ AT1G54310 42571865 NP_974023.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:20277234 CHROM_POS_END:20279116 } -=| MIDDLE_POINT:20278175 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 188 261 1 906 454 XLS3_Contig937 AT1G29050 expressed protein, similar to hypothetical protein GB:AAB67625 GI:2342727 from (Arabidopsis thaliana) [ 18396930 NP_564318.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:10136362 CHROM_POS_END:10139068 } -=| MIDDLE_POINT:10137715 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.88 56 151 269 1 910 380 XLS3_Contig938 AT3G07050 GTP-binding family protein, contains Pfam domain, PF01926: GTPase of unknown function [ 15231373 NP_187361.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2229608 CHROM_POS_END:2232285 } -=| MIDDLE_POINT:2230946 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 328 439 1 1408 582 XLS3_Contig939 AT1G65840 amine oxidase family protein, similar to polyamine oxidase SP:O64411 (Zea mays) [ 15218830 NP_176759.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:24493836 CHROM_POS_END:24496391 } -=| MIDDLE_POINT:24495113 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.91 69 155 224 1 1129 497 XLS3_Contig940 AT3G58690 protein kinase family protein, contains protein kinase domain, Pfam:PF00069 [ 42566031 NP_191428.3 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21720346 CHROM_POS_END:21722223 } -=| MIDDLE_POINT:21721284 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.82 65 149 227 1 859 400 XLS3_Contig941 AT3G06860 fatty acid multifunctional protein (MFP2), identical to fatty acid multifunctional protein (AtMFP2) GB:AF123254 (gi:4337027) (Arabidopsis thaliana) (fatty acid beta-oxidation) [ 15231317 NP_187342.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2161932 CHROM_POS_END:2166015 } -=| MIDDLE_POINT:2163973 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 447 598 1 1834 725 XLS3_Contig942 AT3G54320 similar to ovule development protein, putative [Arabidopsis thaliana] (TAIR:At1g16060.1) [ 79444413 NP_191000.3 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:20125787 CHROM_POS_END:20129577 } -=| MIDDLE_POINT:20127682 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.95 75 167 222 1 857 438 XLS3_Contig943 AT1G17720 serine/threonine protein phosphatase 2A (PP2A) 55 kDa regulatory subunit B, identical to type 2A protein serine/threonine phosphatase 55 kDa B regulatory subunit (GI:1408460) (Arabidopsis thaliana) [ 18394522 NP_564033.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:6093942 CHROM_POS_END:6098058 } -=| MIDDLE_POINT:6096000 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.71 64 143 221 1 947 501 XLS3_Contig944 AT3G27925 DegP protease, putative, SP:022609 [ AT3G27925 22331378 NP_189431.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:10367896 CHROM_POS_END:10370101 } -=| MIDDLE_POINT:10368998 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 90 201 223 1 913 439 XLS3_Contig945 AT5G53920 ribosomal protein L11 methyltransferase-related, similar to ribosomal protein L11 methyltransferase [ 15238878 NP_200203.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21909350 CHROM_POS_END:21911313 } -=| MIDDLE_POINT:21910331 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.65 53 134 249 1 905 371 XLS3_Contig946 AT5G64370 beta-ureidopropionase, putative / beta-alanine synthase, putative, similar to beta-alanine synthase (Dictyostelium discoideum) GI:14334061 [ 30698009 NP_201242.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:25756490 CHROM_POS_END:25758257 } -=| MIDDLE_POINT:25757373 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 220 279 1 925 408 XLS3_Contig947 AT3G21175 zinc finger (GATA type) family protein, similar to zinc finger protein ZIM gi:8918533 from (Arabidopsis thaliana) [ 18402914 NP_566676.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7422838 CHROM_POS_END:7424604 } -=| MIDDLE_POINT:7423721 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.34 53 89 165 1 1008 297 XLS3_Contig948 AT5G35735 auxin-responsive family protein, similar to auxin-induced protein AIR12 GI:11357190 (Arabidopsis thaliana) [ 18421491 NP_568531.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13918143 CHROM_POS_END:13920164 } -=| MIDDLE_POINT:13919153 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.59 52 119 226 1 1006 404 XLS3_Contig949 AT1G79870 oxidoreductase family protein, contains Pfam profile: PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain [ 15220005 NP_178105.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:30049687 CHROM_POS_END:30050744 } -=| MIDDLE_POINT:30050215 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.54 71 101 141 1 915 313 XLS3_Contig950 AT1G18450 actin-related protein 4 (ARP4), neary identical to actin-related protein 4 (ARP4) (Arabidopsis thaliana) GI:21427463 [ 18394608 NP_564051.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6348192 CHROM_POS_END:6351759 } -=| MIDDLE_POINT:6349975 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 251 337 1 1066 441 XLS3_Contig951 AT3G44160 chloroplast outer membrane protein-related, low similarity to chloroplastic outer envelope membrane protein (OEP75) (Pisum sativum) GI:633607 [ 42565501 NP_190002.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15900212 CHROM_POS_END:15902801 } -=| MIDDLE_POINT:15901506 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 184 258 1 986 362 XLS3_Contig952 AT3G05030 sodium proton exchanger, putative (NHX2), similar to sodium proton exchanger Nhx1 GB:AAD16946 (Arabidopsis thaliana) [ 15229877 NP_187154.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1393462 CHROM_POS_END:1396790 } -=| MIDDLE_POINT:1395126 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.88 78 160 204 1 930 546 XLS3_Contig953 AT1G03900 expressed protein [ AT1G03900 18379172 NP_563693.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:991251 CHROM_POS_END:992851 } -=| MIDDLE_POINT:992051 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.82 84 148 175 1 893 272 XLS3_Contig954 AT4G28420 similar to aminotransferase, putative [Arabidopsis thaliana] (TAIR:At2g20610.1) [ 79325337 NP_001031739.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:14055693 CHROM_POS_END:14057415 } -=| MIDDLE_POINT:14056554 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.92 53 158 298 1 916 449 XLS3_Contig955 no_hits_found 0 0 XLS3_Contig956 AT4G01850 S-adenosylmethionine synthetase 2 (SAM2), identical to S-adenosylmethionine synthetase 2 (Methionine adenosyltransferase 2, AdoMet synthetase 2) (Arabidopsis thaliana) SWISS-PROT:P17562 [ 15234354 NP_192094.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:796298 CHROM_POS_END:797479 } -=| MIDDLE_POINT:796888 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 88 211 238 1 889 393 XLS3_Contig957 no_hits_found 0 0 XLS3_Contig958 AT5G51970 sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative, similar to NAD-dependent sorbitol dehydrogenase from Malus x domestica (gi:4519539) [ 15242240 NP_200010.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21129046 CHROM_POS_END:21130510 } -=| MIDDLE_POINT:21129778 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 183 274 1 866 364 XLS3_Contig959 AT2G28630 beta-ketoacyl-CoA synthase family protein [ AT2G28630 15226916 NP_180431.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12282796 CHROM_POS_END:12284226 } -=| MIDDLE_POINT:12283511 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.95 63 162 257 1 888 476 XLS3_Contig960 AT1G60420 DC1 domain-containing protein, contains Pfam domain PF03107: DC1 domain [ 18406743 NP_564756.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22265643 CHROM_POS_END:22267908 } -=| MIDDLE_POINT:22266775 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.97 57 161 278 1 875 578 XLS3_Contig961 AT1G32860 glycosyl hydrolase family 17 protein, similar to beta-1,3-glucanase precursor GI:4097948 from (Oryza sativa) [ 30692765 NP_174563.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11907288 CHROM_POS_END:11908783 } -=| MIDDLE_POINT:11908035 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 59 253 423 1 1475 426 XLS3_Contig962 AT2G24820 Rieske (2Fe-2S) domain-containing protein, similar to Rieske iron-sulfur protein Tic55 from Pisum sativum (gi:2764524) [ 15224625 NP_180055.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10582117 CHROM_POS_END:10583908 } -=| MIDDLE_POINT:10583012 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 177 247 1 866 539 XLS3_Contig963 AT5G57850 aminotransferase class IV family protein, contains Pfam profile: PF01063 aminotransferase class IV [ 22327924 NP_200593.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:23452774 CHROM_POS_END:23454513 } -=| MIDDLE_POINT:23453643 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.56 55 113 202 1 868 373 XLS3_Contig964 AT3G25520 60S ribosomal protein L5, similar to 60S ribosomal protein L5 GB:P49625 from (Oryza sativa) [ 18404552 NP_566767.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9270810 CHROM_POS_END:9272564 } -=| MIDDLE_POINT:9271687 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 240 292 1 949 301 XLS3_Contig965 no_hits_found 0 0 XLS3_Contig966 AT1G19400 expressed protein [ AT1G19400 30686353 NP_850946.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:6712213 CHROM_POS_END:6713667 } -=| MIDDLE_POINT:6712940 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.6 54 126 233 1 1113 303 XLS3_Contig967 AT4G12330 cytochrome P450 family protein, contains Pfam profile:PF00067 cytochrome p450 [ 15234521 NP_192970.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7317774 CHROM_POS_END:7319656 } -=| MIDDLE_POINT:7318715 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.61 41 114 274 1 907 518 XLS3_Contig968 AT2G17975 zinc finger (Ran-binding) family protein, contains Pfam domain, PF00641: Zn-finger in Ran binding protein and others [ 15227939 NP_179388.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7829320 CHROM_POS_END:7831052 } -=| MIDDLE_POINT:7830186 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.51 43 74 172 1 933 268 XLS3_Contig969 AT3G07160 glycosyl transferase family 48 protein, similar to glucan synthase GB:AAD11794 (Filobasidiella neoformans var. neoformans) [ 15231404 NP_187372.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2265148 CHROM_POS_END:2279389 } -=| MIDDLE_POINT:2272268 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 380 477 1 1435 1931 XLS3_Contig970 AT5G53400 nuclear movement family protein, contains Pfam profile: PF03593 nuclear movement protein [ 15238732 NP_200152.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21678814 CHROM_POS_END:21680609 } -=| MIDDLE_POINT:21679711 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.73 52 145 276 1 940 304 XLS3_Contig971 AT3G26040 transferase family protein, similar to deacetylvindoline 4-O-acetyltransferase (Catharanthus roseus)(GI:4091808)(PMID:9681034), alcohol acyltransferase (Fragaria x ananassa)(GI:10121328)(PMID:10810141) [ 15230978 NP_189233.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9520978 CHROM_POS_END:9522306 } -=| MIDDLE_POINT:9521642 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.44 38 101 261 1 888 442 XLS3_Contig972 AT5G54770 thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4), identical to SP|Q38814 Thiazole biosynthetic enzyme, chloroplast precursor (ARA6) {Arabidopsis thaliana} [ 15239735 NP_200288.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22263860 CHROM_POS_END:22265117 } -=| MIDDLE_POINT:22264488 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 220 291 1 908 349 XLS3_Contig973 AT1G20330 S-adenosyl-methionine-sterol-C-methyltransferase, identical to sterol-C-methyltransferase GI:1061040 from (Arabidopsis thaliana) [ 15217917 NP_173458.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7038958 CHROM_POS_END:7040043 } -=| MIDDLE_POINT:7039500 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 225 282 1 874 361 XLS3_Contig974 AT5G62440 expressed protein [ AT5G62440 30697677 NP_201050.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:25089846 CHROM_POS_END:25091143 } -=| MIDDLE_POINT:25090494 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.62 56 127 223 1 869 202 XLS3_Contig975 AT1G12950 MATE efflux family protein, similar to ripening regulated protein DDTFR18 (Lycopersicon esculentum) GI:12231296 [ 15222119 NP_172755.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4419847 CHROM_POS_END:4422460 } -=| MIDDLE_POINT:4421153 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 241 351 1 1178 522 XLS3_Contig976 AT5G50650 WD-40 repeat family protein / St12p protein, putative, contains 4 WD-40 repeats (PF0400) [ 22327692 NP_680414.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20627438 CHROM_POS_END:20629287 } -=| MIDDLE_POINT:20628362 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.58 47 117 245 1 905 383 XLS3_Contig977 no_hits_found 0 0 XLS3_Contig978 AT4G12330 cytochrome P450 family protein, contains Pfam profile:PF00067 cytochrome p450 [ 15234521 NP_192970.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7317774 CHROM_POS_END:7319656 } -=| MIDDLE_POINT:7318715 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.48 38 103 267 1 849 518 XLS3_Contig979 AT2G45310 NAD-dependent epimerase/dehydratase family protein, similar to nucleotide sugar epimerase from Vibrio vulnificus GI:3093975 (PID:g3093975), WbnF (Escherichia coli) GI:5739472, CAPI protein {Staphylococcus aureus} SP|P39858 [ 15225451 NP_182056.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18689726 CHROM_POS_END:18691039 } -=| MIDDLE_POINT:18690382 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.25 76 54 71 1 876 437 XLS3_Contig980 AT4G36710 scarecrow transcription factor family protein [ AT4G36710 15234500 NP_195389.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17306064 CHROM_POS_END:17307524 } -=| MIDDLE_POINT:17306794 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.4 42 113 268 1 1068 486 XLS3_Contig981 AT2G47590 photolyase/blue light photoreceptor (PHR2), identical to photolyase/blue light photoreceptor PHR2 (Arabidopsis thaliana) GI:3319288 [ 15226633 NP_182281.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19528958 CHROM_POS_END:19530802 } -=| MIDDLE_POINT:19529880 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 192 289 1 973 447 XLS3_Contig982 AT4G37820 expressed protein, Kaposi's sarcoma-associated herpes-like virus ORF73gene, Kaposi's sarcoma-associated herpesvirus, U52064 [ 15235717 NP_195495.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17785686 CHROM_POS_END:17787284 } -=| MIDDLE_POINT:17786485 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.2 31 63 203 1 889 532 XLS3_Contig983 AT5G04550 expressed protein, contains Pfam domain PF05003: protein of unknown function (DUF668) [ 15238198 NP_196075.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1303758 CHROM_POS_END:1305557 } -=| MIDDLE_POINT:1304657 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.51 40 98 241 1 889 599 XLS3_Contig984 AT5G37510 NADH-ubiquinone dehydrogenase, mitochondrial, putative, similar to NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial from Solanum tuberosum (SP|Q43644) [ 18421656 NP_568550.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:14914720 CHROM_POS_END:14917677 } -=| MIDDLE_POINT:14916198 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 237 284 1 928 748 XLS3_Contig985 AT5G07030 similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:At3g54400.1) [ 79507883 NP_196320.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2183601 CHROM_POS_END:2185718 } -=| MIDDLE_POINT:2184659 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.94 55 173 313 1 940 455 XLS3_Contig986 AT5G18910 protein kinase family protein, contains protein kinase domain, Pfam:PF00069 [ 30687061 NP_197392.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6306996 CHROM_POS_END:6309398 } -=| MIDDLE_POINT:6308197 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.42 45 89 195 1 1259 511 XLS3_Contig987 AT1G73920 lipase family protein, similar to lipase GB:CAA74737 (SP|O46108) from (Drosophila melanogaster) [ 18410487 NP_565075.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:27794855 CHROM_POS_END:27798359 } -=| MIDDLE_POINT:27796607 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.92 57 188 327 1 1072 704 XLS3_Contig988 AT2G45440 dihydrodipicolinate synthase 2 (DHDPS2), identical to dihydrodipicolinate synthase 2 (DHDPS2) (Arabidopsis thaliana) GI:11066382 [ 15225477 NP_182068.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18738368 CHROM_POS_END:18739941 } -=| MIDDLE_POINT:18739154 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.97 75 167 221 1 978 365 XLS3_Contig989 AT3G51800 metallopeptidase M24 family protein, similar to SP|P50580 Proliferation-associated protein 2G4 {Mus musculus} [ 30693537 NP_850679.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:19222238 CHROM_POS_END:19224545 } -=| MIDDLE_POINT:19223391 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 227 278 1 933 401 XLS3_Contig990 AT4G10380 major intrinsic family protein / MIP family protein, contains Pfam profile: MIP PF00230 [ 15235034 NP_192776.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6431526 CHROM_POS_END:6434506 } -=| MIDDLE_POINT:6433016 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 202 245 1 1226 304 XLS3_Contig991 AT2G19520 WD-40 repeat protein (MSI4), contains 6 (4 significant) WD-40 repeats (PF0400) [ 30680701 NP_565456.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8463088 CHROM_POS_END:8466317 } -=| MIDDLE_POINT:8464702 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 212 275 1 881 507 XLS3_Contig992 AT5G07840 ankyrin repeat family protein, contains ankyrin repeats, Pfam:PF00023 [ 18415625 NP_568184.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2506765 CHROM_POS_END:2507292 } -=| MIDDLE_POINT:2507028 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.26 68 58 85 1 922 175 XLS3_Contig993 AT5G53370 pectinesterase family protein [ AT5G53370 15238729 NP_200149.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21666909 CHROM_POS_END:21668756 } -=| MIDDLE_POINT:21667832 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.52 44 118 267 1 929 587 XLS3_Contig994 AT3G21770 peroxidase 30 (PER30) (P30) (PRXR9), identical to SP|Q9LSY7 Peroxidase 30 precursor (EC 1.11.1.7) (Atperox P30) (PRXR9) (ATP7a) {Arabidopsis thaliana} [ 15233153 NP_188814.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7673352 CHROM_POS_END:7674668 } -=| MIDDLE_POINT:7674010 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.65 46 129 280 1 897 329 XLS3_Contig995 AT4G15550 UDP-glucose:indole-3-acetate beta-D-glucosyltransferase (IAGLU), identical to UDP-glucose:indole-3-acetate beta-D-glucosyltransferase (iaglu) GI:2149126 from (Arabidopsis thaliana) [ 18414478 NP_567471.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8877875 CHROM_POS_END:8879299 } -=| MIDDLE_POINT:8878587 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.8 48 155 317 1 990 474 XLS3_Contig996 AT3G59090 expressed protein [ AT3G59090 18411092 NP_567077.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21850311 CHROM_POS_END:21853426 } -=| MIDDLE_POINT:21851868 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.55 49 96 195 1 911 373 XLS3_Contig997 AT1G20370 tRNA pseudouridine synthase family protein, similar to SP|Q9WU56 tRNA pseudouridine synthase A (EC 4.2.1.70) (Uracil hydrolyase) {Mus musculus} [ 18394855 NP_564112.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7051836 CHROM_POS_END:7053578 } -=| MIDDLE_POINT:7052707 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 56 224 400 1 1236 549 XLS3_Contig998 AT1G12640 membrane bound O-acyl transferase (MBOAT) family protein, low similarity to porcupine from (Xenopus laevis) GI:6714514, GI:6714520, GI:6714518, GI:6714516 [ 22329514 NP_172724.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4303584 CHROM_POS_END:4305664 } -=| MIDDLE_POINT:4304624 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 215 285 1 902 462 XLS3_Contig999 AT1G45249 similar to ABA-responsive element-binding protein 2 (AREB2) [Arabidopsis thaliana] (TAIR:At3g19290.1) [ 30693958 NP_849777.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17167860 CHROM_POS_END:17169855 } -=| MIDDLE_POINT:17168857 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.48 59 94 157 1 881 416 XLS3_Contig1000 AT5G16510 reversibly glycosylated polypeptide, putative, similar to reversibly glycosylatable polypeptide (RGP1) (Pisum sativum) GI:2130521 [ 15237362 NP_197155.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:5393299 CHROM_POS_END:5394345 } -=| MIDDLE_POINT:5393822 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.76 69 135 195 1 875 348 XLS3_Contig1001 AT2G39570 ACT domain-containing protein, contains Pfam ACT domain PF01842 [ 18405098 NP_565908.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16515041 CHROM_POS_END:16516819 } -=| MIDDLE_POINT:16515930 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.88 62 162 260 1 957 411 XLS3_Contig1002 AT3G20020 protein arginine N-methyltransferase family protein, similar to SP|Q96LA8 Protein arginine N-methyltransferase 6 (EC 2.1.1.-) {Homo sapiens} [ 30685597 NP_188637.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6984061 CHROM_POS_END:6987951 } -=| MIDDLE_POINT:6986006 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 211 295 1 950 435 XLS3_Contig1003 AT5G18520 expressed protein [ AT5G18520 15238858 NP_197353.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6145029 CHROM_POS_END:6146351 } -=| MIDDLE_POINT:6145690 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 189 279 1 926 440 XLS3_Contig1004 AT1G79550 phosphoglycerate kinase, putative, similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii} [ 15219412 NP_178073.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:29929240 CHROM_POS_END:29931188 } -=| MIDDLE_POINT:29930214 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 86 241 278 1 1009 401 XLS3_Contig1005 AT2G42810 similar to serine/threonine protein phosphatase PP1 isozyme 2 (TOPP2) [Arabidopsis thaliana] (TAIR:At5g59160.1) [ 79324899 NP_001031534.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17819413 CHROM_POS_END:17822973 } -=| MIDDLE_POINT:17821193 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 292 440 1 1321 538 XLS3_Contig1006 AT4G34460 guanine nucleotide-binding protein beta subunit (GB1) / GTP-binding protein beta subunit (AGB1) / transducin, contains 7 WD-40 repeats (PF00400) [ 15236122 NP_195172.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:16477397 CHROM_POS_END:16479270 } -=| MIDDLE_POINT:16478333 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 212 260 1 964 377 XLS3_Contig1007 AT5G65980 auxin efflux carrier family protein, contains auxin efflux carrier domain, Pfam:PF03547 [ 15239215 NP_201399.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:26409670 CHROM_POS_END:26411458 } -=| MIDDLE_POINT:26410564 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.89 54 158 289 1 926 395 XLS3_Contig1008 AT1G09020 protein kinase, putative, similar to protein kinase AKINbetagamma-2 (Zea mays) GI:11139548, AKINbetagamma-1 (Zea mays) GI:11139546 [ 18390971 NP_563834.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2900152 CHROM_POS_END:2904215 } -=| MIDDLE_POINT:2902183 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.49 49 112 228 1 901 487 XLS3_Contig1009 AT3G47250 expressed protein, contains Pfam profile PF03140: Plant protein of unknown function [ 15232754 NP_190309.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17411109 CHROM_POS_END:17412551 } -=| MIDDLE_POINT:17411830 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.16 34 52 149 1 879 480 XLS3_Contig1010 AT4G33630 expressed protein [ AT4G33630 18418256 NP_567929.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:16155563 CHROM_POS_END:16159097 } -=| MIDDLE_POINT:16157330 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.59 49 116 235 1 1041 684 XLS3_Contig1011 AT1G02270 endonuclease/exonuclease/phosphatase family protein [ AT1G02270 18378941 NP_563646.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:443301 CHROM_POS_END:446197 } -=| MIDDLE_POINT:444749 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 63 180 284 1 923 484 XLS3_Contig1012 AT1G72100 late embryogenesis abundant domain-containing protein / LEA domain-containing protein, low similarity to embryogenic gene (Betula pendula) GI:4539485 [ 15218349 NP_177355.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:27130912 CHROM_POS_END:27132473 } -=| MIDDLE_POINT:27131692 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.24 29 88 299 1 1071 480 XLS3_Contig1013 AT4G03000 expressed protein, contains similarity to hypothetical proteins [ 42566260 NP_192209.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1324602 CHROM_POS_END:1327348 } -=| MIDDLE_POINT:1325975 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.29 35 82 232 1 899 814 XLS3_Contig1014 AT3G22200 4-aminobutyrate aminotransferase / gamma-amino-N-butyrate transaminase / GABA transaminase / beta-alanine--oxoglutarate aminotransferase, identical to gamma-aminobutyrate transaminase subunit precursor (Arabidopsis thaliana) (EC 2.6.1.19) GI:14030435 [ 18403295 NP_566700.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7835293 CHROM_POS_END:7838870 } -=| MIDDLE_POINT:7837081 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 356 442 1 1439 504 XLS3_Contig1015 AT1G74470 geranylgeranyl reductase, identical to geranylgeranyl reductase GB:Y14044 (Arabidopsis thaliana) (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15 [ 15221261 NP_177587.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:27994909 CHROM_POS_END:27996506 } -=| MIDDLE_POINT:27995707 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 323 454 1 1424 467 XLS3_Contig1016 AT1G55170 expressed protein [ AT1G55170 18405242 NP_564678.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20584245 CHROM_POS_END:20585373 } -=| MIDDLE_POINT:20584809 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.62 49 131 266 1 944 283 XLS3_Contig1017 AT1G09340 expressed protein [ AT1G09340 15217485 NP_172405.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3015475 CHROM_POS_END:3018037 } -=| MIDDLE_POINT:3016756 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 268 320 1 1258 378 XLS3_Contig1018 AT1G27760 interferon-related developmental regulator family protein / IFRD protein family, contains Pfam PF05004: Interferon-related developmental regulator (IFRD) [ 42571665 NP_973923.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9668882 CHROM_POS_END:9671309 } -=| MIDDLE_POINT:9670095 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 62 187 297 1 1265 441 XLS3_Contig1019 AT3G22680 expressed protein [ AT3G22680 30686741 NP_188907.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8019792 CHROM_POS_END:8020381 } -=| MIDDLE_POINT:8020086 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.37 43 77 176 1 766 163 XLS3_Contig1020 AT4G35250 vestitone reductase-related, low similarity to vestitone reductase (Medicago sativa subsp. sativa) GI:973249 [ 15236930 NP_195251.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16771406 CHROM_POS_END:16773274 } -=| MIDDLE_POINT:16772340 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.94 69 177 255 1 873 395 XLS3_Contig1021 AT3G05060 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696 [ 15229884 NP_187157.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1413180 CHROM_POS_END:1415570 } -=| MIDDLE_POINT:1414375 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 362 452 1 1483 533 XLS3_Contig1022 AT1G30790 F-box family protein, contains Pfam PF00646: F-box domain [ 15221502 NP_174365.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10932695 CHROM_POS_END:10933894 } -=| MIDDLE_POINT:10933294 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.26 32 98 305 1 915 399 XLS3_Contig1023 AT5G58420 40S ribosomal protein S4 (RPS4D), ribosomal protein S4, Arabidopsis thaliana, PIR:T48480 [ 15237195 NP_200650.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:23636825 CHROM_POS_END:23638122 } -=| MIDDLE_POINT:23637473 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 89 233 261 1 1015 262 XLS3_Contig1024 AT5G65960 expressed protein [ AT5G65960 18425013 NP_569023.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:26402639 CHROM_POS_END:26404423 } -=| MIDDLE_POINT:26403531 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.93 61 171 280 1 910 393 XLS3_Contig1025 AT3G48700 expressed protein, similar to PrMC3 (Pinus radiata) GI:5487873 [ 15228426 NP_190439.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18049810 CHROM_POS_END:18050799 } -=| MIDDLE_POINT:18050304 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.67 47 136 284 1 898 329 XLS3_Contig1026 AT2G27380 proline-rich family protein, contains proline-rich extensin domains, INTERPRO:IPR002965 [ 15225875 NP_180307.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11720489 CHROM_POS_END:11722774 } -=| MIDDLE_POINT:11721631 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.29 39 88 221 1 734 761 XLS3_Contig1027 AT1G72150 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein, similar to SEC14-like protein 2 (Alpha-tocopherol associated protein) (TAP) (bTAP) (Fragment) (SP:P58875) {Bos taurus} [ 15218382 NP_177360.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:27152220 CHROM_POS_END:27154314 } -=| MIDDLE_POINT:27153267 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.53 43 143 326 1 1021 573 XLS3_Contig1028 AT4G27440 protochlorophyllide reductase B, chloroplast / PCR B / NADPH-protochlorophyllide oxidoreductase B (PORB), identical to SP:P21218 protochlorophyllide reductase B, chloroplast precursor (EC 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) (Arabidopsis thaliana) [ 15234129 NP_194474.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:13725654 CHROM_POS_END:13727113 } -=| MIDDLE_POINT:13726383 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 238 312 1 1040 401 XLS3_Contig1029 AT3G07370 tetratricopeptide repeat (TPR)-containing protein / U-box domain-containing protein, similar to serologically defined colon cancer antigen 7 GB:5031963 GI:3170178 (Homo sapiens) [ 18397925 NP_566305.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2358329 CHROM_POS_END:2360307 } -=| MIDDLE_POINT:2359318 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.82 62 149 239 1 951 278 XLS3_Contig1030 AT5G61820 expressed protein, MtN19, Medicago truncatula, EMBL:MTY15367 [ 22328003 NP_200990.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:24851731 CHROM_POS_END:24853449 } -=| MIDDLE_POINT:24852590 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.85 50 148 295 1 923 475 XLS3_Contig1031 AT4G22340 similar to phosphatidate cytidylyltransferase / CDP-diglyceride synthetase (CDS1) [Arabidopsis thaliana] (TAIR:At1g62430.1) [ 79325225 NP_001031697.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:11800162 CHROM_POS_END:11802633 } -=| MIDDLE_POINT:11801397 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.95 73 169 229 1 887 447 XLS3_Contig1032 AT3G50780 expressed protein [ AT3G50780 15230303 NP_190647.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18886643 CHROM_POS_END:18888322 } -=| MIDDLE_POINT:18887482 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.71 53 85 158 1 1288 520 XLS3_Contig1033 AT4G37310 cytochrome P450, putative [ AT4G37310 30690935 NP_568024.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17556146 CHROM_POS_END:17558827 } -=| MIDDLE_POINT:17557486 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.6 42 128 301 1 990 518 XLS3_Contig1034 AT4G38460 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative, 65% similar to geranylgeranyl pyrophosphate synthase (GI:413730) [ 15233848 NP_195558.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17994843 CHROM_POS_END:17995968 } -=| MIDDLE_POINT:17995405 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.89 76 157 206 1 912 326 XLS3_Contig1035 AT5G17310 UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative, strong similarity to SP|P19595 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (UDP-glucose pyrophosphorylase) (UDPGP) (UGPase) {Solanum tuberosum} [ 15237947 NP_197233.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:5696957 CHROM_POS_END:5700847 } -=| MIDDLE_POINT:5698902 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 212 261 1 944 470 XLS3_Contig1036 AT5G49610 F-box family protein, contains Pfam PF00646: F-box domain [ 15240516 NP_199772.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20148674 CHROM_POS_END:20149753 } -=| MIDDLE_POINT:20149213 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.76 65 132 203 1 914 359 XLS3_Contig1037 AT4G12330 cytochrome P450 family protein, contains Pfam profile:PF00067 cytochrome p450 [ 15234521 NP_192970.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7317774 CHROM_POS_END:7319656 } -=| MIDDLE_POINT:7318715 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.92 41 177 422 1 1325 518 XLS3_Contig1038 AT3G14660 cytochrome P450, putative, similar to GB:Q05047 from (Catharanthus roseus) [ 15231903 NP_188084.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4924967 CHROM_POS_END:4926918 } -=| MIDDLE_POINT:4925942 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 51 190 372 1 1135 512 XLS3_Contig1039 AT1G52380 Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein, weak similarity to SP|Q09717 Ran-specific GTPase-activating protein 1 (Ran binding protein 1) (RANBP1) (Spi1-binding protein) {Schizosaccharomyces pombe} [ 18403992 NP_564606.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19513648 CHROM_POS_END:19514970 } -=| MIDDLE_POINT:19514309 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.68 46 172 372 1 960 440 XLS3_Contig1040 AT3G53380 lectin protein kinase family protein, contains Pfam domains, PF00069: Protein kinase domain, PF00138: Legume lectins alpha domain, and PF00139: Legume lectins beta domain [ 15231802 NP_190906.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19800182 CHROM_POS_END:19802329 } -=| MIDDLE_POINT:19801255 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.24 38 72 186 1 856 715 XLS3_Contig1041 AT4G00050 basic helix-loop-helix (bHLH) family protein, contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain [ 30678541 NP_191916.3 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17863 CHROM_POS_END:19848 } -=| MIDDLE_POINT:18855 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.37 41 123 294 1 968 399 XLS3_Contig1042 no_hits_found 0 0 XLS3_Contig1043 AT4G36760 aminopeptidase P, similar to Xaa-Pro aminopeptidase 2 (Lycopersicon esculentum) GI:15384991 [ 15234515 NP_195394.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17326727 CHROM_POS_END:17329985 } -=| MIDDLE_POINT:17328356 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 63 187 296 1 1104 634 XLS3_Contig1044 AT2G46570 laccase family protein / diphenol oxidase family protein, similar to laccase (Populus balsamifera subsp. trichocarpa)(GI:3805960) [ 15226011 NP_182180.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19133944 CHROM_POS_END:19136141 } -=| MIDDLE_POINT:19135042 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 62 178 285 1 891 569 XLS3_Contig1045 AT5G46280 DNA replication licensing factor, putative, similar to SP|Q43704 DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) {Zea mays} [ 15237411 NP_199440.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18787129 CHROM_POS_END:18790833 } -=| MIDDLE_POINT:18788981 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 210 264 1 968 776 XLS3_Contig1046 AT4G30240 expressed protein, predicted protein, Arabidopsis thaliana [ 18417554 NP_567842.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14808365 CHROM_POS_END:14809751 } -=| MIDDLE_POINT:14809058 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.59 42 128 300 1 1110 300 XLS3_Contig1047 AT5G65380 ripening-responsive protein, putative, similar to ripening regulated protein DDTFR18 (Lycopersicon esculentum) GI:12231296 [ 15238439 NP_201341.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26140467 CHROM_POS_END:26143578 } -=| MIDDLE_POINT:26142022 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 252 369 1 1215 486 XLS3_Contig1048 AT1G10070 branched-chain amino acid aminotransferase 2 / branched-chain amino acid transaminase 2 (BCAT2), identical to SP|Q9M439 Branched-chain amino acid aminotransferase 2, chloroplast precursor (EC 2.6.1.42) (Atbcat-2) {Arabidopsis thaliana} [ 15218409 NP_172478.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:3288257 CHROM_POS_END:3290166 } -=| MIDDLE_POINT:3289211 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 183 264 1 950 388 XLS3_Contig1049 AT4G30920 cytosol aminopeptidase family protein, contains Pfam profiles: PF00883 cytosol aminopeptidase family catalytic domain, PF02789: cytosol aminopeptidase family N-terminal domain [ 15235763 NP_194821.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15046595 CHROM_POS_END:15049310 } -=| MIDDLE_POINT:15047952 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 337 456 1 1499 583 XLS3_Contig1050 AT5G01960 zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) [ 18413797 NP_568096.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:370808 CHROM_POS_END:372772 } -=| MIDDLE_POINT:371790 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.47 49 111 225 1 1132 426 XLS3_Contig1051 AT4G36480 aminotransferase class I and II family protein, similar to Serine palmitoyltransferase 1 (EC 2.3.1.50) from Homo sapiens (SP|O15269), Mus musculus (SP|O35704), Cricetulus griseus (SP|O54695) [ 18419845 NP_568005.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17218601 CHROM_POS_END:17221127 } -=| MIDDLE_POINT:17219864 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 263 342 1 1280 482 XLS3_Contig1052 AT3G48425 endonuclease/exonuclease/phosphatase family protein, similar to SP|P51173|APEA_DICDI DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)(Class II apurinic/apyrimidinic(AP)-endonuclease) {Dictyostelium discoideum} [ 42565714 NP_566904.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17942895 CHROM_POS_END:17945478 } -=| MIDDLE_POINT:17944186 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 189 280 1 894 364 XLS3_Contig1053 AT3G55140 pectate lyase family protein, similar to pollen allergen Amb a 1.3 SP:P27761 from (Ambrosia artemisiifolia) [ 30694193 NP_191074.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:20449796 CHROM_POS_END:20451202 } -=| MIDDLE_POINT:20450499 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 215 267 1 996 331 XLS3_Contig1054 AT3G62770 transport protein-related, weak similarity to Gsa12p (Pichia pastoris) GI:18307769 [ 42572767 NP_974479.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:23229834 CHROM_POS_END:23232085 } -=| MIDDLE_POINT:23230959 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.9 63 158 248 1 883 432 XLS3_Contig1055 AT1G56090 tetratricopeptide repeat (TPR)-containing protein, contains Pfam profile PF00515 TPR Domain [ 18405682 NP_564708.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20981654 CHROM_POS_END:20982850 } -=| MIDDLE_POINT:20982252 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.58 70 112 160 1 932 272 XLS3_Contig1056 AT3G51140 expressed protein [ AT3G51140 18409276 NP_566946.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19009161 CHROM_POS_END:19010416 } -=| MIDDLE_POINT:19009788 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.7 56 138 244 1 1320 278 XLS3_Contig1057 AT3G23820 NAD-dependent epimerase/dehydratase family protein, similar to nucleotide sugar epimerase from Vibrio vulnificus GI:3093975 (PID:g3093975), WbnF (Escherichia coli) GI:5739472, CAPI protein {Staphylococcus aureus} SP|P39858 [ 15229524 NP_189024.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8603652 CHROM_POS_END:8605034 } -=| MIDDLE_POINT:8604343 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 184 255 1 881 460 XLS3_Contig1058 AT5G42050 expressed protein, similar to gda-1 (Pisum sativum) GI:2765418 [ 18422167 NP_568600.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16832858 CHROM_POS_END:16834160 } -=| MIDDLE_POINT:16833509 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.85 56 179 318 1 1127 349 XLS3_Contig1059 AT5G36250 protein phosphatase 2C, putative / PP2C, putative [ AT5G36250 15239351 NP_198474.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:14299820 CHROM_POS_END:14301606 } -=| MIDDLE_POINT:14300713 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.58 54 68 125 1 1008 448 XLS3_Contig1060 AT3G12100 cation efflux family protein / metal tolerance protein, putative, member of the cation diffusion facilitator (CDF) family, or cation efflux (CE) family, PMID:11500563 [ 42564078 NP_187817.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:3854747 CHROM_POS_END:3857276 } -=| MIDDLE_POINT:3856011 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.64 58 137 235 1 1281 393 XLS3_Contig1061 AT4G03020 transducin family protein / WD-40 repeat family protein, contains 6 WD-40 repeats (PF00400) [ 22328262 NP_192211.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1331704 CHROM_POS_END:1334472 } -=| MIDDLE_POINT:1333088 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.46 65 88 134 1 978 493 XLS3_Contig1062 AT3G55430 glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative, similar to beta-1,3 glucanase GI:7414433 from (Pisum sativum) [ 15233271 NP_191103.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20560783 CHROM_POS_END:20562981 } -=| MIDDLE_POINT:20561882 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.91 56 170 300 1 923 449 XLS3_Contig1063 AT3G04740 expressed protein (SWP1) [ AT3G04740 15229344 NP_187125.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1294043 CHROM_POS_END:1300561 } -=| MIDDLE_POINT:1297302 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 60 192 320 1 1023 1703 XLS3_Contig1064 no_hits_found 0 0 XLS3_Contig1065 AT1G78830 curculin-like (mannose-binding) lectin family protein, similar to S glycoprotein (Brassica rapa) GI:2351186 [ 18412129 NP_565191.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:29642034 CHROM_POS_END:29643401 } -=| MIDDLE_POINT:29642717 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.67 46 141 305 1 865 455 XLS3_Contig1066 AT5G04070 short-chain dehydrogenase/reductase (SDR) family protein, contains INTERPRO family IPR002198 Short-chain dehydrogenase/reductase (SDR) superfamily [ 42567629 NP_196027.3 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1102239 CHROM_POS_END:1104193 } -=| MIDDLE_POINT:1103216 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 57 190 328 1 1329 359 XLS3_Contig1067 AT4G32660 protein kinase (AFC3) (AME3), identical to protein kinase AFC3 (Arabidopsis thaliana) SWISS-PROT:P51568 [ 15233872 NP_194992.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:15756401 CHROM_POS_END:15759112 } -=| MIDDLE_POINT:15757756 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.94 68 164 240 1 866 400 XLS3_Contig1068 AT1G30480 DNA-damage-repair/toleration protein, chloroplast (DRT111), nearly identical to SP|P42698 DNA-damage-repair/toleration protein DRT111, chloroplast precursor {Arabidopsis thaliana} [ 15220757 NP_174336.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10790297 CHROM_POS_END:10792405 } -=| MIDDLE_POINT:10791351 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 282 400 1 1368 387 XLS3_Contig1069 AT3G15350 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein, contains Pfam profile: PF02485 Core-2/I-Branching enzyme [ 18400725 NP_566506.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:5167257 CHROM_POS_END:5168889 } -=| MIDDLE_POINT:5168073 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.69 67 63 93 1 915 424 XLS3_Contig1070 AT3G02540 ubiquitin family protein, contains Pfam profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N domain [ 15232924 NP_186903.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:533102 CHROM_POS_END:536158 } -=| MIDDLE_POINT:534630 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.75 58 156 265 1 919 419 XLS3_Contig1071 AT5G45820 CBL-interacting protein kinase 20 (CIPK20), identical to CBL-interacting protein kinase 20 (Arabidopsis thaliana) gi|14486384|gb|AAK61493 [ 15242509 NP_199394.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18604308 CHROM_POS_END:18605627 } -=| MIDDLE_POINT:18604967 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.76 74 134 179 1 938 439 XLS3_Contig1072 AT5G58020 expressed protein, contains PF04641: Protein of unknown function, DUF602 [ 15242923 NP_200610.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:23502811 CHROM_POS_END:23503875 } -=| MIDDLE_POINT:23503343 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.86 61 162 265 1 966 354 XLS3_Contig1073 AT1G53210 sodium/calcium exchanger family protein / calcium-binding EF hand family protein, contains Pfam profiles: PF01699 sodium/calcium exchanger protein, PF00036 EF hand [ 30695448 NP_564623.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19848458 CHROM_POS_END:19851201 } -=| MIDDLE_POINT:19849829 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 57 262 456 1 1363 585 XLS3_Contig1074 AT1G31930 extra-large guanine nucleotide binding protein, putative / G-protein, putative, similar to extra-large G-protein (XLG) (Arabidopsis thaliana) GI:3201680 [ 15222516 NP_174475.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:11465812 CHROM_POS_END:11468941 } -=| MIDDLE_POINT:11467376 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.48 46 116 248 1 1114 848 XLS3_Contig1075 AT1G12370 type II CPD photolyase PHR1 (PHR1), nearly identical to type II CPD photolyase PHR1 (Arabidopsis thaliana) GI:2984707 [ 30682738 NP_849651.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4206498 CHROM_POS_END:4208840 } -=| MIDDLE_POINT:4207669 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 280 392 1 1243 496 XLS3_Contig1076 AT5G15900 expressed protein, several hypothetical proteins - Arabidopsis thaliana [ 15237213 NP_197094.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5189527 CHROM_POS_END:5192073 } -=| MIDDLE_POINT:5190800 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.73 51 121 237 1 1030 426 XLS3_Contig1077 AT4G13590 expressed protein, contains Pfam profile PF01169: Uncharacterized protein family UPF0016 [ 42566759 NP_193095.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7901365 CHROM_POS_END:7903788 } -=| MIDDLE_POINT:7902576 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 212 298 1 1636 359 XLS3_Contig1078 AT5G52040 arginine/serine-rich splicing factor RSP41 (RSP41), nearly identical to SP|P92966 Arginine/serine-rich splicing factor RSP41 {Arabidopsis thaliana} [ 30696140 NP_200017.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21148307 CHROM_POS_END:21150544 } -=| MIDDLE_POINT:21149425 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.72 70 143 203 1 940 357 XLS3_Contig1079 AT5G63530 copper chaperone (CCH)-related, low similarity to copper homeostasis factor (GI:3168840) [ 18424719 NP_568974.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:25450505 CHROM_POS_END:25452840 } -=| MIDDLE_POINT:25451672 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.81 59 164 275 1 920 355 XLS3_Contig1080 AT1G20670 DNA-binding bromodomain-containing protein, contains bromodomain, INTERPRO:IPR001487 [ 15218005 NP_173490.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7164527 CHROM_POS_END:7167923 } -=| MIDDLE_POINT:7166225 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.44 36 110 300 1 967 652 XLS3_Contig1081 AT5G23960 terpene synthase/cyclase family protein, non-consensus TA donor splice site at exon 4 [ 42568048 NP_197784.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8092972 CHROM_POS_END:8095131 } -=| MIDDLE_POINT:8094051 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.98 40 184 451 1 1506 547 XLS3_Contig1082 AT5G25800 exonuclease family protein, contains exonuclease domain, Pfam:PF00929 [ 42568083 NP_197952.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8979764 CHROM_POS_END:8982727 } -=| MIDDLE_POINT:8981245 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.58 57 112 195 1 897 567 XLS3_Contig1083 AT5G10330 histidinol-phosphate aminotransferase, putative, similar to histidinol-phosphate aminotransferase GB:CAA70403 (GI:335562) from (Nicotiana tabacum), Nicotiana plumbaginifolia (GI:12055099) [ 18416245 NP_568226.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:3248028 CHROM_POS_END:3249859 } -=| MIDDLE_POINT:3248943 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 197 281 1 950 417 XLS3_Contig1084 AT3G61610 aldose 1-epimerase family protein, similar to apospory-associated protein C [ 15233165 NP_191720.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22810455 CHROM_POS_END:22812004 } -=| MIDDLE_POINT:22811229 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.9 77 152 197 1 956 317 XLS3_Contig1085 AT1G17220 translation initiation factor IF-2, chloroplast, putative, similar to SP|P57997|IF2C_PHAVU Translation initiation factor IF-2, chloroplast precursor (PvIF2cp) {Phaseolus vulgaris} [ 15220055 NP_173165.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5885376 CHROM_POS_END:5890158 } -=| MIDDLE_POINT:5887767 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.17 37 73 195 1 986 1026 XLS3_Contig1086 AT4G08960 phosphotyrosyl phosphatase activator (PTPA) family protein, similar to Protein phosphatase 2A, regulatory subunit B' (PP2A, subunit B', PR53 isoform) (Phosphotyrosyl phosphatase activator) (PTPA) (Swiss-Prot:Q28717) (Oryctolagus cuniculus) [ 18413175 NP_567342.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5746323 CHROM_POS_END:5747991 } -=| MIDDLE_POINT:5747157 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 180 258 1 930 392 XLS3_Contig1087 AT3G63130 RAN GTPase activating protein 1 (RanGAP1), contains Pfam PF00560: Leucine Rich Repeat domains [ 15229383 NP_191872.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:23336083 CHROM_POS_END:23337690 } -=| MIDDLE_POINT:23336886 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 233 350 1 1214 535 XLS3_Contig1088 AT3G19490 sodium hydrogen antiporter, putative, similar to NhaD (Vibrio parahaemolyticus) gi|3123728|dbj|BAA25994 [ 18402254 NP_566638.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6754881 CHROM_POS_END:6758133 } -=| MIDDLE_POINT:6756507 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.82 73 156 211 1 858 576 XLS3_Contig1089 AT1G08570 thioredoxin family protein, contains Pfam profile: PF00085 Thioredoxin [ 15223262 NP_172333.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2713062 CHROM_POS_END:2714315 } -=| MIDDLE_POINT:2713688 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.55 53 104 196 1 873 275 XLS3_Contig1090 AT5G06950 bZIP transcription factor HBP-1b homolog, identical to transcription factor HBP-1b homolog SP:P43273 from (Arabidopsis thaliana) [ 15240216 NP_196312.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2152324 CHROM_POS_END:2154175 } -=| MIDDLE_POINT:2153249 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.88 62 172 275 1 1188 330 XLS3_Contig1091 AT1G54290 eukaryotic translation initiation factor SUI1, putative, similar to P|P32911 Protein translation factor SUI1 {Saccharomyces cerevisiae} [ 15221783 NP_175831.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20272377 CHROM_POS_END:20273057 } -=| MIDDLE_POINT:20272717 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.54 87 99 113 1 691 113 XLS3_Contig1092 AT4G32520 glycine hydroxymethyltransferase, putative / serine hydroxymethyltransferase, putative / serine/threonine aldolase, putative, similar to serine hydroxymethyltransferase (Chlamydomonas reinhardtii) GI:17066746 [ 18418028 NP_567895.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15689648 CHROM_POS_END:15692340 } -=| MIDDLE_POINT:15690994 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 298 382 1 1270 529 XLS3_Contig1093 AT5G67220 nitrogen regulation family protein, similar to unknown protein (gb|AAF51525.1) [ 15240243 NP_201523.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26837502 CHROM_POS_END:26839152 } -=| MIDDLE_POINT:26838327 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 181 242 1 837 423 XLS3_Contig1094 AT2G39840 serine/threonine protein phosphatase PP1 isozyme 4 (TOPP4) / phosphoprotein phosphatase 1, identical to SP|P48484 Serine/threonine protein phosphatase PP1 isozyme 4 (EC 3.1.3.16) {Arabidopsis thaliana}, phosphoprotein phosphatase 1 GI:166801 (Arabidopsis thaliana) [ 15225576 NP_181514.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16634508 CHROM_POS_END:16635867 } -=| MIDDLE_POINT:16635187 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 201 234 1 973 321 XLS3_Contig1095 AT5G57655 xylose isomerase family protein, contains similarity to Xylose isomerase (EC 5.3.1.5) (Swiss-Prot:P22842) (Thermoanaerobacter ethanolicus) [ 30696904 NP_568861.3 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:23364256 CHROM_POS_END:23367031 } -=| MIDDLE_POINT:23365643 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 180 233 1 898 477 XLS3_Contig1096 AT4G35730 expressed protein, similar to expressed protein [Arabidopsis thaliana] (TAIR:At1g34220.2) [ 79497106 NP_195298.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16931116 CHROM_POS_END:16933246 } -=| MIDDLE_POINT:16932181 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.76 74 146 196 1 842 466 XLS3_Contig1097 AT3G58610 ketol-acid reductoisomerase, identical to ketol-acid reductoisomerase, chloroplast precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) (Swiss-Prot:Q05758) (Arabidopsis thaliana) [ 15231092 NP_191420.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21682538 CHROM_POS_END:21685616 } -=| MIDDLE_POINT:21684077 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 90 271 298 1 1307 591 XLS3_Contig1098 AT4G31860 protein phosphatase 2C, putative / PP2C, putative, protein phosphatase 2C, Schizosaccharomyces pombe, PIR2:S54297 [ 15236548 NP_194914.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:15406691 CHROM_POS_END:15408595 } -=| MIDDLE_POINT:15407643 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 215 272 1 1049 357 XLS3_Contig1099 AT2G23093 expressed protein [ AT2G23093 30681953 NP_850037.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9839273 CHROM_POS_END:9841496 } -=| MIDDLE_POINT:9840384 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.61 51 120 233 1 906 449 XLS3_Contig1100 AT3G49190 condensation domain-containing protein, contains Pfam profile PF00668: Condensation domain [ 15229102 NP_190488.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18242973 CHROM_POS_END:18245361 } -=| MIDDLE_POINT:18244167 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.34 30 84 276 1 904 522 XLS3_Contig1101 AT1G75680 glycosyl hydrolase family 9 protein, similar to endo-beta-1,4-glucanase GB:AAC12685 GI:3025470 from (Pinus radiata) [ 15222328 NP_177697.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:28420876 CHROM_POS_END:28422892 } -=| MIDDLE_POINT:28421884 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.96 64 152 234 1 981 525 XLS3_Contig1102 AT5G57330 aldose 1-epimerase family protein, contains Pfam profile PF01263 Aldose 1-epimerase [ 15242099 NP_200543.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:23235618 CHROM_POS_END:23237890 } -=| MIDDLE_POINT:23236754 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 174 260 1 910 312 XLS3_Contig1103 AT5G21060 similar to bifunctional aspartate kinase/homoserine dehydrogenase, putative / AK-HSDH, putative [Arabidopsis thaliana] (TAIR:At4g19710.2) [ 79328311 NP_001031917.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7149155 CHROM_POS_END:7152747 } -=| MIDDLE_POINT:7150951 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.93 63 175 277 1 867 378 XLS3_Contig1104 AT4G22850 expressed protein [ AT4G22850 30685958 NP_194016.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11994205 CHROM_POS_END:11995952 } -=| MIDDLE_POINT:11995078 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.52 66 87 131 1 878 296 XLS3_Contig1105 AT1G29670 GDSL-motif lipase/hydrolase family protein, similar to family II lipase EXL1 GI:15054382 from (Arabidopsis thaliana) [ 15220514 NP_174260.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10375829 CHROM_POS_END:10377703 } -=| MIDDLE_POINT:10376766 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.74 54 134 246 1 1089 363 XLS3_Contig1106 AT3G27740 carbamoyl-phosphate synthase (glutamine-hydrolyzing) (CARA) / glutamine-dependent carbamoyl-phosphate synthase small subunit, identical to carbamoyl phosphate synthetase small subunit GI:2462781 (Arabidopsis thaliana) [ 18405507 NP_566824.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:10282707 CHROM_POS_END:10285029 } -=| MIDDLE_POINT:10283868 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 309 412 1 1612 430 XLS3_Contig1107 AT3G02690 integral membrane family protein, similar to PecM protein (GI:5852331) {Vogesella indigofera} and PecM protein (SP:P42194) (Erwinia chrysanthemi) [ 18396278 NP_566180.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:579634 CHROM_POS_END:581455 } -=| MIDDLE_POINT:580544 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.63 62 117 187 1 893 417 XLS3_Contig1108 AT4G12910 serine carboxypeptidase S10 family protein, SERINE CARBOXYPEPTIDASE I PRECURSOR - Hordeum vulgare, SWall:CBP1_HORVU [ 30682276 NP_193027.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7550612 CHROM_POS_END:7553048 } -=| MIDDLE_POINT:7551830 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 309 468 1 1589 484 XLS3_Contig1109 AT1G15740 leucine-rich repeat family protein [ AT1G15740 30684506 NP_563980.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5411504 CHROM_POS_END:5414539 } -=| MIDDLE_POINT:5413021 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.81 67 153 227 1 889 585 XLS3_Contig1110 AT2G26980 similar to protein kinase family protein / NAF domain-containing protein [Arabidopsis thaliana] (TAIR:At5g21326.1) [ 79592682 NP_850095.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:11522312 CHROM_POS_END:11525504 } -=| MIDDLE_POINT:11523908 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 87 211 242 1 982 451 XLS3_Contig1111 AT2G38710 AMMECR1 family, similar to AMMECR1 (GI:6063688) (Homo sapiens) [ 18404840 NP_565894.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:16191595 CHROM_POS_END:16193842 } -=| MIDDLE_POINT:16192718 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.94 77 159 205 1 969 214 XLS3_Contig1112 AT4G31180 aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative, similar to Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS) (Homo sapiens) GI:20178330 [ 30688944 NP_849558.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:15156702 CHROM_POS_END:15159368 } -=| MIDDLE_POINT:15158035 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 338 522 1 1679 558 XLS3_Contig1113 AT1G30700 FAD-binding domain-containing protein, similar to SP|P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) (Eschscholzia californica) [ 15221473 NP_174357.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10892605 CHROM_POS_END:10894419 } -=| MIDDLE_POINT:10893512 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.8 51 143 280 1 878 527 XLS3_Contig1114 AT3G59300 expressed protein, hypothetical protein T2J13.20 - Arabidopsis thaliana, PIR:T46116 [ 18411137 NP_567080.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21929644 CHROM_POS_END:21932854 } -=| MIDDLE_POINT:21931249 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.44 49 90 182 1 1027 459 XLS3_Contig1115 AT4G04640 ATP synthase gamma chain 1, chloroplast (ATPC1), identical to SP|Q01908 ATP synthase gamma chain 1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis thaliana} [ 18412632 NP_567265.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2350759 CHROM_POS_END:2351880 } -=| MIDDLE_POINT:2351319 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.26 68 58 85 1 858 373 XLS3_Contig1116 AT5G49220 expressed protein [ AT5G49220 22327664 NP_199733.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19973853 CHROM_POS_END:19975679 } -=| MIDDLE_POINT:19974766 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.66 43 148 342 1 1104 409 XLS3_Contig1117 AT3G53690 zinc finger (C3HC4-type RING finger) family protein, contains a Zinc finger, C3HC4 type (RING finger) signature, PROSITE:PS00518 and a IBR domain, Pfam:PF01485 [ 15231861 NP_190937.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19909975 CHROM_POS_END:19911022 } -=| MIDDLE_POINT:19910498 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.41 36 78 211 1 919 320 XLS3_Contig1118 AT1G08510 acyl-(acyl carrier protein) thioesterase / acyl-ACP thioesterase / oleoyl-(acyl-carrier protein) hydrolase / S-acyl fatty acid synthase thioesterase, identical to acyl-(acyl carrier protein) thioesterase (Arabidopsis thaliana) GI:804948 [ 15223236 NP_172327.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2691549 CHROM_POS_END:2693412 } -=| MIDDLE_POINT:2692480 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 193 286 1 975 412 XLS3_Contig1119 AT4G33420 peroxidase, putative, identical to class III peroxidase ATP32 (Arabidopsis thaliana) gi|17530547|gb|AAL40837 [ 18418208 NP_567919.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16084859 CHROM_POS_END:16086108 } -=| MIDDLE_POINT:16085483 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 187 263 1 931 325 XLS3_Contig1120 AT5G06560 expressed protein, contains Pfam profile PF04576: Protein of unknown function, DUF593 [ 15240088 NP_196274.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2003679 CHROM_POS_END:2005544 } -=| MIDDLE_POINT:2004611 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.78 38 197 517 1 1648 518 XLS3_Contig1121 AT1G11650 RNA-binding protein 45 (RBP45), putative, similar to gb|U90212 DNA binding protein ACBF from Nicotiana tabacum and contains 3 PF|00076 RNA recognition motif domains. ESTs gb|T44278, gb|R65195, gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278, gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1 [ 15221071 NP_172630.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:3914895 CHROM_POS_END:3917941 } -=| MIDDLE_POINT:3916418 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.95 64 156 241 1 1078 405 XLS3_Contig1122 AT3G15000 expressed protein, similar to DAG protein (required for chloroplast differentiation and palisade development) GB:Q38732 (Antirrhinum majus) [ 18400602 NP_566496.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5050328 CHROM_POS_END:5052128 } -=| MIDDLE_POINT:5051228 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 205 301 1 880 395 XLS3_Contig1123 AT3G51980 expressed protein [ AT3G51980 15231095 NP_190766.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19296789 CHROM_POS_END:19298480 } -=| MIDDLE_POINT:19297634 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.84 47 187 391 1 1333 382 XLS3_Contig1124 AT5G10170 inositol-3-phosphate synthase, putative / myo-inositol-1-phosphate synthase, putative / MI-1-P synthase, putative, very strong similarity to SP|Q38862 Myo-inositol-1-phosphate synthase isozyme 2 (EC 5.5.1.4) (MI-1-P synthase 2) (IPS 2) {Arabidopsis thaliana} [ 15238080 NP_196579.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3187539 CHROM_POS_END:3190162 } -=| MIDDLE_POINT:3188850 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 86 223 258 1 859 510 XLS3_Contig1125 AT5G65690 phosphoenolpyruvate carboxykinase (ATP), putative / PEP carboxykinase, putative / PEPCK, putative, similar to phosphoenolpyruvate carboxykinase (Lycopersicon esculentum) GI:16950587, SP|Q9SLZ0 Phosphoenolpyruvate carboxykinase (ATP) (EC 4.1.1.49) (PEP carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) {Zea mays} [ 22328084 NP_680468.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:26283703 CHROM_POS_END:26286712 } -=| MIDDLE_POINT:26285207 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 92 278 301 1 904 670 XLS3_Contig1126 AT1G27040 nitrate transporter, putative, contains Pfam profile: PF00854 POT family [ 22329803 NP_174024.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9386880 CHROM_POS_END:9390005 } -=| MIDDLE_POINT:9388442 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.59 42 116 276 1 908 567 XLS3_Contig1127 AT2G21070 expressed protein [ AT2G21070 42569208 NP_179703.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9048021 CHROM_POS_END:9050217 } -=| MIDDLE_POINT:9049119 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 225 350 1 1423 483 XLS3_Contig1128 AT4G11680 zinc finger (C3HC4-type RING finger) family protein, low similarity to SP|Q9WTV7 RING finger protein 12 (LIM domain interacting RING finger protein) {Mus musculus} [ 18413629 NP_567379.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7053731 CHROM_POS_END:7055510 } -=| MIDDLE_POINT:7054620 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.79 62 147 234 1 952 390 XLS3_Contig1129 AT2G05710 aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative, nearly identical to SP|P49608 Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) {Cucurbita maxima} [ 30678219 NP_178634.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2141588 CHROM_POS_END:2146347 } -=| MIDDLE_POINT:2143967 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 86 364 422 1 1273 990 XLS3_Contig1130 AT1G59740 proton-dependent oligopeptide transport (POT) family protein, contains Pfam profile: PF00854 POT family [ 15218903 NP_176183.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21971892 CHROM_POS_END:21975977 } -=| MIDDLE_POINT:21973934 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 177 232 1 881 591 XLS3_Contig1131 AT2G18280 tubby-like protein 2 (TULP2), identical to tubby-like protein 2 (GI:27372512) {Arabidopsis thaliana} [ 30680328 NP_849975.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7953836 CHROM_POS_END:7955258 } -=| MIDDLE_POINT:7954547 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.92 60 175 287 1 1141 394 XLS3_Contig1132 AT5G19440 cinnamyl-alcohol dehydrogenase, putative (CAD), similar to cinnamyl-alcohol dehydrogenase, Eucalyptus gunnii (GI:1143445), apple tree, PIR:T16995 [ 15239741 NP_197445.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6556495 CHROM_POS_END:6558125 } -=| MIDDLE_POINT:6557310 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.9 60 168 276 1 1005 326 XLS3_Contig1133 AT5G33370 GDSL-motif lipase/hydrolase family protein, similar to family II lipase EXL3 (GI:15054386), EXL1 (GI:15054382), EXL2 (GI:15054384) (Arabidopsis thaliana) [ 15242808 NP_198322.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12620003 CHROM_POS_END:12621900 } -=| MIDDLE_POINT:12620951 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 181 265 1 906 366 XLS3_Contig1134 AT3G03740 speckle-type POZ protein-related, contains Pfam PF00651 : BTB/POZ domain [ 30678912 NP_566212.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:937113 CHROM_POS_END:939814 } -=| MIDDLE_POINT:938463 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.99 76 173 227 1 900 465 XLS3_Contig1135 AT1G78140 methyltransferase-related, similar to Probable delta(24)-sterol C-methyltransferase (Swiss-Prot:O14321) (Schizosaccharomyces pombe) [ 18411840 NP_565170.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:29406830 CHROM_POS_END:29408771 } -=| MIDDLE_POINT:29407800 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.8 55 154 276 1 868 355 XLS3_Contig1136 AT5G19780 tubulin alpha-3/alpha-5 chain (TUA5), nearly identical to SP|P20363 Tubulin alpha-3/alpha-5 chain {Arabidopsis thaliana} [ 15241179 NP_197479.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6687214 CHROM_POS_END:6688928 } -=| MIDDLE_POINT:6688071 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 92 218 235 1 1574 450 XLS3_Contig1137 AT3G27000 actin-related protein 2 (ARP2), nearly identical to actin-related protein 2 (ARP2) (Arabidopsis thaliana) GI:3818624 [ 15232057 NP_189336.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9954024 CHROM_POS_END:9957021 } -=| MIDDLE_POINT:9955522 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 129 155 1 960 389 XLS3_Contig1138 AT2G42690 lipase, putative, similar to lipase (Dianthus caryophyllus) GI:4103627 [ 15227978 NP_181797.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17783433 CHROM_POS_END:17784759 } -=| MIDDLE_POINT:17784096 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.91 57 168 294 1 927 412 XLS3_Contig1139 AT2G02180 tobamovirus multiplication protein 3 (TOM3), identical to tobamovirus multiplication protein (TOM3) GI:15425641 from (Arabidopsis thaliana) [ 18395323 NP_027422.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:560975 CHROM_POS_END:562960 } -=| MIDDLE_POINT:561967 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.6 51 122 238 1 934 303 XLS3_Contig1140 AT2G34250 protein transport protein sec61, putative, similar to PfSec61 (Plasmodium falciparum) GI:3057044 [ 15226261 NP_180972.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:14469714 CHROM_POS_END:14471651 } -=| MIDDLE_POINT:14470682 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 95 245 257 1 923 475 XLS3_Contig1141 no_hits_found 0 0 XLS3_Contig1142 AT1G54140 transcription initiation factor IID (TFIID) 31 kDa subunit (TAFII-31) family protein, contains Pfam profile: PF02291 transcription initiation factor IID, 31kD subunit [ 15221048 NP_175816.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20217743 CHROM_POS_END:20218536 } -=| MIDDLE_POINT:20218139 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.38 77 77 99 1 1543 183 XLS3_Contig1143 AT1G80480 PRLI-interacting factor L, putative, similar to PRLI-interacting factor L (Arabidopsis thaliana) GI:11139268 [ 15220146 NP_178163.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:30263164 CHROM_POS_END:30265462 } -=| MIDDLE_POINT:30264313 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.99 68 189 275 1 947 444 XLS3_Contig1144 AT4G13980 heat shock transcription factor family protein, contains Pfam profile: PF00447 HSF-type DNA-binding domain [ 18414114 NP_567415.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8077514 CHROM_POS_END:8079242 } -=| MIDDLE_POINT:8078378 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.96 60 176 290 1 937 466 XLS3_Contig1145 no_hits_found 0 0 XLS3_Contig1146 AT1G80400 zinc finger (C3HC4-type RING finger) family protein, low similarity to SP|Q90972 RING finger protein 13 {Gallus gallus} [ 15220126 NP_178156.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:30230756 CHROM_POS_END:30232252 } -=| MIDDLE_POINT:30231504 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.38 39 90 229 1 892 407 XLS3_Contig1147 AT1G55480 expressed protein [ AT1G55480 18405391 NP_564691.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20717488 CHROM_POS_END:20719017 } -=| MIDDLE_POINT:20718252 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.94 66 181 274 1 918 335 XLS3_Contig1148 AT5G48020 expressed protein [ AT5G48020 18422862 NP_568689.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19480114 CHROM_POS_END:19482016 } -=| MIDDLE_POINT:19481065 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 249 360 1 1425 355 XLS3_Contig1149 AT3G23280 zinc finger (C3HC4-type RING finger) family protein [ AT3G23280 18403707 NP_566724.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:8321595 CHROM_POS_END:8324116 } -=| MIDDLE_POINT:8322855 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.99 64 175 272 1 1026 462 XLS3_Contig1150 AT5G43060 cysteine proteinase, putative / thiol protease, putative, similar to cysteine proteinase RD21A precursor (thiol protease) GI:435619, SP:P43297 from (Arabidopsis thaliana) [ 18422289 NP_568620.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17287012 CHROM_POS_END:17289345 } -=| MIDDLE_POINT:17288178 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.95 63 168 265 1 920 463 XLS3_Contig1151 AT1G01710 acyl-CoA thioesterase family protein, contains Pfam profiles: PF02551 acyl-CoA thioesterase, PF00027 cyclic nucleotide-binding domain [ 30678177 NP_563632.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:262950 CHROM_POS_END:266029 } -=| MIDDLE_POINT:264489 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.74 50 145 288 1 879 427 XLS3_Contig1152 AT1G76160 multi-copper oxidase type I family protein, similar to pollen-specific BP10 protein (SP|Q00624)(Brassica napus) [ 15222981 NP_177743.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:28583105 CHROM_POS_END:28585914 } -=| MIDDLE_POINT:28584509 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 213 268 1 933 541 XLS3_Contig1153 AT4G38040 exostosin family protein, contains Pfam profile: PF03016 Exostosin family [ 15233650 NP_195517.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17867495 CHROM_POS_END:17869125 } -=| MIDDLE_POINT:17868310 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.97 69 173 250 1 907 425 XLS3_Contig1154 AT5G26751 shaggy-related protein kinase alpha / ASK-alpha (ASK1), identical to shaggy-related protein kinase alpha SP:P43288 GI:460832 from (Arabidopsis thaliana) [ 18421039 NP_568486.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9399585 CHROM_POS_END:9401842 } -=| MIDDLE_POINT:9400713 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 282 329 1 1305 405 XLS3_Contig1155 AT2G14170 methylmalonate-semialdehyde dehydrogenase, putative, similar to methylmalonate-semialdehyde dehydrogenase (acylating), mitochondrial precursor (MMSDH) (Rattus norvegicus) SWISS-PROT:Q02253 [ 15225601 NP_179032.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5984809 CHROM_POS_END:5988981 } -=| MIDDLE_POINT:5986895 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 229 279 1 893 607 XLS3_Contig1156 AT5G12010 expressed protein [ AT5G12010 15239835 NP_196762.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3877976 CHROM_POS_END:3879484 } -=| MIDDLE_POINT:3878730 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 57 205 356 1 1150 502 XLS3_Contig1157 AT3G26430 GDSL-motif lipase/hydrolase family protein, similar to early nodulin ENOD8 (Medicago sativa) GI:304037 [ 15231558 NP_189274.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9675656 CHROM_POS_END:9677126 } -=| MIDDLE_POINT:9676391 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.59 54 107 196 1 871 380 XLS3_Contig1158 AT3G59350 serine/threonine protein kinase, putative, similar to Pto kinase interactor 1 (Pti1)(Lycopersicon esculentum) gi|3668069|gb|AAC61805 [ 30694970 NP_567082.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21943907 CHROM_POS_END:21945860 } -=| MIDDLE_POINT:21944883 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.9 68 150 220 1 884 408 XLS3_Contig1159 AT5G27540 GTP-binding protein-related, low similarity to Mig-2-like GTPase Mtl (Drosophila melanogaster) GI:7271872 [ 15240981 NP_198106.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9722819 CHROM_POS_END:9727115 } -=| MIDDLE_POINT:9724967 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 184 267 1 923 648 XLS3_Contig1160 AT5G52570 beta-carotene hydroxylase, putative, similar to GI:1575296, beta-carotene hydroxylase [ 15237204 NP_200070.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21352137 CHROM_POS_END:21354113 } -=| MIDDLE_POINT:21353125 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.6 56 125 222 1 837 303 XLS3_Contig1161 no_hits_found 0 0 XLS3_Contig1162 AT1G01860 dimethyladenosine transferase (PFC1), identical to dimethyladenosine transferase GB:AAC09322 GI:3005590 from (Arabidopsis thaliana) [ 15220982 NP_171690.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:304439 CHROM_POS_END:306275 } -=| MIDDLE_POINT:305357 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.79 68 140 204 1 826 343 XLS3_Contig1163 AT3G04570 DNA-binding protein-related, contains Pfam domain PF03479: Domain of unknown function (DUF296), found in AT-hook motifs Pfam:PF02178 [ 18396925 NP_566232.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1231227 CHROM_POS_END:1232174 } -=| MIDDLE_POINT:1231700 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.87 68 164 240 1 930 315 XLS3_Contig1164 AT4G34860 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative, similar to neutral invertase (Daucus carota) GI:4200165 [ 15236209 NP_195212.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:16609960 CHROM_POS_END:16612024 } -=| MIDDLE_POINT:16610992 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.91 65 183 279 1 986 571 XLS3_Contig1165 AT5G27540 GTP-binding protein-related, low similarity to Mig-2-like GTPase Mtl (Drosophila melanogaster) GI:7271872 [ 15240981 NP_198106.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9722819 CHROM_POS_END:9727115 } -=| MIDDLE_POINT:9724967 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 206 269 1 942 648 XLS3_Contig1166 AT4G22890 expressed protein [ AT4G22890 18416029 NP_567672.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:12007168 CHROM_POS_END:12009186 } -=| MIDDLE_POINT:12008177 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.61 63 124 195 1 919 324 XLS3_Contig1167 AT1G22360 UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase [ 15219870 NP_173653.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7895057 CHROM_POS_END:7897516 } -=| MIDDLE_POINT:7896286 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.99 66 173 262 1 816 481 XLS3_Contig1168 AT3G50690 leucine-rich repeat family protein [ AT3G50690 15229830 NP_190638.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18846252 CHROM_POS_END:18848078 } -=| MIDDLE_POINT:18847165 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.96 73 176 240 1 924 447 XLS3_Contig1169 AT1G60620 DNA-directed RNA polymerase, putative, identical to RNA polymerase subunit (Arabidopsis thaliana) GI:514324 [ 15219773 NP_176261.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22334890 CHROM_POS_END:22337035 } -=| MIDDLE_POINT:22335962 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.88 60 139 231 1 931 385 XLS3_Contig1170 AT2G37460 nodulin MtN21 family protein, similar to MtN21 GI:2598575 (root nodule development) from (Medicago truncatula) [ 15224291 NP_181282.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15733745 CHROM_POS_END:15736088 } -=| MIDDLE_POINT:15734916 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 216 327 1 1135 380 XLS3_Contig1171 AT4G04950 thioredoxin family protein, similar to PKCq-interacting protein PICOT from (Mus musculus) GI:6840949, (Rattus norvegicus) GI:6840951 [ 15234516 NP_192404.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2517880 CHROM_POS_END:2519922 } -=| MIDDLE_POINT:2518901 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 183 258 1 855 488 XLS3_Contig1172 AT4G21520 transducin family protein / WD-40 repeat family protein, contains 5 WD-40 repeats (PF00400) [ 30685465 NP_193883.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11447526 CHROM_POS_END:11450389 } -=| MIDDLE_POINT:11448957 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 192 283 1 967 425 XLS3_Contig1173 AT4G17530 Ras-related GTP-binding protein, putative, very strong similarity to RAB1C (Lotus corniculatus var. japonicus) GI:1370166 [ 15236555 NP_193486.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9773734 CHROM_POS_END:9775437 } -=| MIDDLE_POINT:9774585 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 89 180 202 1 882 202 XLS3_Contig1174 AT1G69780 homeobox-leucine zipper protein 13 (HB-13) / HD-ZIP transcription factor 13, identical to homeobox gene 13 protein (GP:12325190) (Arabidopsis thaliana) [ 15222452 NP_177136.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:26262829 CHROM_POS_END:26264128 } -=| MIDDLE_POINT:26263478 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.82 70 164 233 1 940 294 XLS3_Contig1175 AT1G07180 pyridine nucleotide-disulphide oxidoreductase family protein, contains similarity to alternative NADH-dehydrogenase GI:3718005 from (Yarrowia lipolytica), SP|P32340 Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor (EC 1.6.5.3) (Internal NADH dehydrogenase) {Saccharomyces cerevisiae} [ 18390737 NP_563783.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2204413 CHROM_POS_END:2206772 } -=| MIDDLE_POINT:2205592 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.73 64 138 214 1 858 510 XLS3_Contig1176 AT1G49820 5-methylthioribose kinase family, contains TIGRfam TIGR01767: 5-methylthioribose kinase profile [ 18402794 NP_564555.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18446673 CHROM_POS_END:18448575 } -=| MIDDLE_POINT:18447624 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 209 280 1 1041 420 XLS3_Contig1177 AT1G52630 expressed protein, contains Pfam PF03138: Plant protein family. The function of this family of plant proteins is unknown [ 22330205 NP_175672.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:19610138 CHROM_POS_END:19612194 } -=| MIDDLE_POINT:19611166 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 304 399 1 1353 439 XLS3_Contig1178 AT2G25300 similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:At4g32120.1) [ 79562781 NP_180102.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:10779001 CHROM_POS_END:10781235 } -=| MIDDLE_POINT:10780118 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.93 72 170 236 1 887 346 XLS3_Contig1179 AT3G09630 60S ribosomal protein L4/L1 (RPL4A), strong similarity to 60S ribosomal protein L1 GB:P49691 [ 15232723 NP_187574.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2953818 CHROM_POS_END:2955449 } -=| MIDDLE_POINT:2954633 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 228 275 1 881 406 XLS3_Contig1180 AT4G31940 cytochrome P450, putative, cytochrome P450 monooxygenase, Pisum sativum, PATCHX:G894153 [ 15236586 NP_194922.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15452046 CHROM_POS_END:15453972 } -=| MIDDLE_POINT:15453009 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.59 43 115 264 1 816 524 XLS3_Contig1181 AT1G77470 replication factor C 36 kDA, putative, similar to SWISS-PROT:P40937 activator 1 36 kDa subunit (Replication factor C 36 kDa subunit, A1 36 kDa subunit, RF-C 36 kDa subunit, RFC36) (Homo sapiens) [ 15223967 NP_177871.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:29117088 CHROM_POS_END:29119217 } -=| MIDDLE_POINT:29118152 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 227 297 1 983 369 XLS3_Contig1182 AT2G45270 glycoprotease M22 family protein, similar to SP|P36175 O-sialoglycoprotein endopeptidase (EC 3.4.24.57) (Glycoprotease) {Pasteurella haemolytica} [ 18406750 NP_566039.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18673657 CHROM_POS_END:18676406 } -=| MIDDLE_POINT:18675031 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 177 228 1 1082 480 XLS3_Contig1183 AT1G59900 pyruvate dehydrogenase E1 component alpha subunit, mitochondrial (PDHE1-A), identical to SP|P52901 Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor (EC 1.2.4.1) (PDHE1-A) {Arabidopsis thaliana} [ 15218940 NP_176198.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22055033 CHROM_POS_END:22057325 } -=| MIDDLE_POINT:22056179 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 236 293 1 978 389 XLS3_Contig1184 no_hits_found 0 0 XLS3_Contig1185 AT1G62730 expressed protein [ AT1G62730 18407646 NP_564800.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:23232869 CHROM_POS_END:23233783 } -=| MIDDLE_POINT:23233326 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 190 259 1 884 304 XLS3_Contig1186 AT1G25440 zinc finger (B-box type) family protein, similar to zinc finger protein GI:3618318 from (Oryza sativa) [ 30689221 NP_173915.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8933926 CHROM_POS_END:8935271 } -=| MIDDLE_POINT:8934598 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.47 47 128 272 1 879 417 XLS3_Contig1187 no_hits_found 0 0 XLS3_Contig1188 AT1G47310 expressed protein [ AT1G47310 18401665 NP_564503.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17345522 CHROM_POS_END:17347058 } -=| MIDDLE_POINT:17346290 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.39 38 98 256 1 1012 395 XLS3_Contig1189 AT5G50260 cysteine proteinase, putative, similar to cysteine endopeptidase precursor CysEP GI:2944446 from (Ricinus communis) [ 18423124 NP_568722.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20472831 CHROM_POS_END:20474088 } -=| MIDDLE_POINT:20473459 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 193 274 1 867 361 XLS3_Contig1190 AT5G62700 tubulin beta-2/beta-3 chain (TUB3), nearly identical to SP|P29512 Tubulin beta-2/beta-3 chain {Arabidopsis thaliana} [ 18424622 NP_568960.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:25201727 CHROM_POS_END:25203652 } -=| MIDDLE_POINT:25202689 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 96 431 447 1 1559 450 XLS3_Contig1191 AT2G40320 expressed protein, and genefinder [ AT2G40320 42569796 NP_181563.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16847408 CHROM_POS_END:16849217 } -=| MIDDLE_POINT:16848312 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.87 69 144 207 1 857 425 XLS3_Contig1192 AT5G44730 haloacid dehalogenase-like hydrolase family protein, low similarity to SP|Q94915 Rhythmically expressed gene 2 protein (DREG-2) {Drosophila melanogaster} [ 42573575 NP_974884.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:18062815 CHROM_POS_END:18063746 } -=| MIDDLE_POINT:18063280 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 190 252 1 1265 255 XLS3_Contig1193 AT2G24360 serine/threonine/tyrosine kinase, putative, similar to serine/threonine/tyrosine kinase (Arachis hypogaea) gi|13124865|gb|AAK11734 [ 18400528 NP_565568.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:10371822 CHROM_POS_END:10373155 } -=| MIDDLE_POINT:10372488 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.63 60 123 203 1 964 411 XLS3_Contig1194 AT3G10410 serine carboxypeptidase III, putative, similar to serine carboxypeptidase III from Oryza sativa SP|P37891, Matricaria chamomilla GI:6960455, Hordeum vulgare SP|P21529, Triticum aestivum SP|P11515 [ 15228281 NP_187652.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3235523 CHROM_POS_END:3238068 } -=| MIDDLE_POINT:3236795 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.91 59 170 286 1 878 516 XLS3_Contig1195 AT5G35830 ankyrin repeat family protein, contains ankyrin repeats, Pfam:PF00023 [ 15239209 NP_198432.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14017543 CHROM_POS_END:14018646 } -=| MIDDLE_POINT:14018094 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.15 44 42 95 1 1069 282 XLS3_Contig1196 AT4G11820 hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase, identical to Hydroxymethylglutaryl-CoA synthase (EC 4.1.3.5) (HMG-CoA synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) (Swiss-Prot:P54873) (Arabidopsis thaliana) [ 15234313 NP_192919.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7109118 CHROM_POS_END:7111895 } -=| MIDDLE_POINT:7110506 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 312 407 1 1412 461 XLS3_Contig1197 AT5G04710 aspartyl aminopeptidase, putative, similar to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21) {Homo sapiens} [ 15238278 NP_196091.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1357274 CHROM_POS_END:1360129 } -=| MIDDLE_POINT:1358701 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 252 350 1 1063 526 XLS3_Contig1198 AT1G15720 myb family transcription factor, contains Pfam PF00249: Myb-like DNA-binding domain [ 15218285 NP_173024.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5406133 CHROM_POS_END:5407305 } -=| MIDDLE_POINT:5406719 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.12 26 51 195 1 842 390 XLS3_Contig1199 AT4G22810 DNA-binding protein-related, contains Pfam domain PF03479: Domain of unknown function (DUF296), found in AT-hook motifs Pfam:PF02178 [ 15235815 NP_194012.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11984443 CHROM_POS_END:11985417 } -=| MIDDLE_POINT:11984930 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.53 55 109 198 1 817 324 XLS3_Contig1200 AT4G00755 F-box family protein, [ AT4G00755 18411435 NP_567185.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:325294 CHROM_POS_END:326787 } -=| MIDDLE_POINT:326040 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.67 53 136 256 1 932 377 XLS3_Contig1201 AT1G28390 protein kinase family protein, contains protein kinase domain, Pfam:PF00069 [ 15218652 NP_174161.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9966800 CHROM_POS_END:9968212 } -=| MIDDLE_POINT:9967506 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 56 199 353 1 1351 470 XLS3_Contig1202 AT5G15080 protein kinase, putative, similar to protein kinase APK1A (Arabidopsis thaliana) Swiss-Prot:Q06548 [ 15242204 NP_197012.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4886417 CHROM_POS_END:4888558 } -=| MIDDLE_POINT:4887487 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 239 349 1 1459 493 XLS3_Contig1203 AT3G48410 hydrolase, alpha/beta fold family protein, low simiilarity to 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (Rhodococcus sp. RHA1) GI:8978311, SP|Q59695|ACOC_PSEPU Dihydrolipoamide acetyltransferase component of acetoin cleaving system (EC 2.3.1.12) (Acetoin dehydrogenase E2 component) {Pseudomonas putida} [ 15228377 NP_190412.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17936771 CHROM_POS_END:17939085 } -=| MIDDLE_POINT:17937928 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.82 58 140 239 1 798 385 XLS3_Contig1204 AT5G25360 expressed protein [ AT5G25360 15239401 NP_197918.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8799937 CHROM_POS_END:8802336 } -=| MIDDLE_POINT:8801136 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.33 42 70 163 1 848 169 XLS3_Contig1205 AT5G37930 seven in absentia (SINA) family protein, similar to SIAH1 protein (Brassica napus var. napus) GI:7657876 [ 15240805 NP_198609.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15119469 CHROM_POS_END:15120881 } -=| MIDDLE_POINT:15120175 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.51 37 112 295 1 962 349 XLS3_Contig1206 no_hits_found 0 0 XLS3_Contig1207 AT1G29980 expressed protein, contains Pfam profile PF04862: Protein of unknown function, DUF642 [ 18397308 NP_564344.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:10503395 CHROM_POS_END:10505978 } -=| MIDDLE_POINT:10504686 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 193 273 1 953 407 XLS3_Contig1208 AT1G58440 squalene monooxygenase, putative / squalene epoxidase, putative, similar to SP|O65404 (SE 1,1), SP|O65402 (SE 1,2) 6566341 dbj AB008021.1 AB008021 [ 18406296 NP_564734.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21717759 CHROM_POS_END:21720911 } -=| MIDDLE_POINT:21719335 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 316 421 1 1441 531 XLS3_Contig1209 AT2G01190 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein, Pfam profile PF00564: PB1 domain [ 18379168 NP_565256.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:115022 CHROM_POS_END:117295 } -=| MIDDLE_POINT:116158 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.68 50 147 294 1 927 720 XLS3_Contig1210 AT3G04470 similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:At1g04780.1) [ 79391178 NP_566227.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1189847 CHROM_POS_END:1191859 } -=| MIDDLE_POINT:1190853 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 220 323 1 947 640 XLS3_Contig1211 no_hits_found 0 0 XLS3_Contig1212 AT5G48470 expressed protein [ AT5G48470 18422916 NP_568697.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19659036 CHROM_POS_END:19661353 } -=| MIDDLE_POINT:19660194 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.88 71 173 243 1 884 397 XLS3_Contig1213 AT5G55610 expressed protein [ AT5G55610 15240548 NP_200372.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:22543207 CHROM_POS_END:22545084 } -=| MIDDLE_POINT:22544145 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.7 59 147 249 1 979 329 XLS3_Contig1214 AT5G63850 amino acid transporter 4, putative (AAP4), identical to amino acid transporter GI:608671 from (Arabidopsis thaliana) [ 15237539 NP_201190.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:25568720 CHROM_POS_END:25570600 } -=| MIDDLE_POINT:25569660 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 253 329 1 1138 466 XLS3_Contig1215 AT1G78700 brassinosteroid signalling positive regulator-related, contains similarity to BZR1 protein (Arabidopsis thaliana) gi|20270971|gb|AAM18490 [ 18412073 NP_565187.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:29604747 CHROM_POS_END:29606432 } -=| MIDDLE_POINT:29605589 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.76 65 157 241 1 898 325 XLS3_Contig1216 AT3G12750 zinc transporter (ZIP1), identical to putative zinc transporter GB:AAC24197 from (Arabidopsis thaliana), ( Proc. Natl. Acad. Sci. U.S.A. 95 (12), 7220-7224 (1998)) [ 15230588 NP_187881.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4051957 CHROM_POS_END:4053163 } -=| MIDDLE_POINT:4052560 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.71 50 139 276 1 873 355 XLS3_Contig1217 AT4G13965 F-box family protein, contains F-box domain Pfam:PF00646 [ AT4G13965 22328603 NP_680683.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8066699 CHROM_POS_END:8067672 } -=| MIDDLE_POINT:8067185 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.13 27 63 233 1 2029 294 XLS3_Contig1218 AT3G20300 expressed protein [ AT3G20300 18402564 NP_566658.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7079838 CHROM_POS_END:7081815 } -=| MIDDLE_POINT:7080826 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 188 254 1 830 452 XLS3_Contig1219 AT1G29750 leucine-rich repeat transmembrane protein kinase, putative / serine/threonine kinase, putative (RKF1), similar to receptor-like serine/threonine kinase GI:2465923 from (Arabidopsis thaliana) [ 30690881 NP_174268.3 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:10414056 CHROM_POS_END:10420454 } -=| MIDDLE_POINT:10417255 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.49 51 94 184 1 849 1021 XLS3_Contig1220 AT3G22640 cupin family protein, contains similarity to vicilin-like protein precursor (Juglans regia) GI:6580762, vicilin precursor (Theobroma cacao) PIR|S22477, vicilin precursor (Macadamia integrifolia) GI:5852872 [ 18403467 NP_566714.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8011909 CHROM_POS_END:8013890 } -=| MIDDLE_POINT:8012899 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.29 31 71 224 1 1068 486 XLS3_Contig1221 AT1G74250 DNAJ heat shock N-terminal domain-containing protein, contains Pfam domains PF00226: DnaJ domain and PF00096: Zinc finger, C2H2 type [ 15221189 NP_177565.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:27923989 CHROM_POS_END:27926075 } -=| MIDDLE_POINT:27925032 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 184 262 1 824 630 XLS3_Contig1222 AT3G56190 alpha-soluble NSF attachment protein 2 / alpha-SNAP2 / ASNAP2, identical to alpha-soluble NSF attachment protein 2 / alpha-SNAP2 SP:Q9SPE6 from (Arabidopsis thaliana) [ 15228848 NP_191178.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:20857098 CHROM_POS_END:20859335 } -=| MIDDLE_POINT:20858216 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 192 264 1 958 289 XLS3_Contig1223 AT1G02170 latex-abundant family protein (AMC1) / caspase family protein, contains similarity to latex-abundant protein (Hevea brasiliensis) gb:AAD13216 [ 30678252 NP_171719.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:411883 CHROM_POS_END:413426 } -=| MIDDLE_POINT:412654 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 242 345 1 1141 367 XLS3_Contig1224 AT2G39000 GCN5-related N-acetyltransferase (GNAT) family protein, contains Pfam profile PF00583: acetyltransferase, GNAT family [ 15224996 NP_181433.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:16293532 CHROM_POS_END:16295019 } -=| MIDDLE_POINT:16294275 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.85 70 154 218 1 914 291 XLS3_Contig1225 AT2G44950 zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) [ 30689877 NP_182022.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18549677 CHROM_POS_END:18555322 } -=| MIDDLE_POINT:18552499 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.4 52 99 189 1 916 878 XLS3_Contig1226 AT2G28790 osmotin-like protein, putative, similar to SP|Q41350 Osmotin-like protein precursor {Lycopersicon esculentum} [ 15226956 NP_180445.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12361741 CHROM_POS_END:12362490 } -=| MIDDLE_POINT:12362115 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 170 237 1 958 249 XLS3_Contig1227 AT5G42090 expressed protein [ AT5G42090 15238277 NP_199024.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16844058 CHROM_POS_END:16845377 } -=| MIDDLE_POINT:16844717 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.84 57 150 260 1 835 439 XLS3_Contig1228 AT5G48930 transferase family protein, similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (GI:3288180, GI:2239091) [ 15239747 NP_199704.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19853880 CHROM_POS_END:19855318 } -=| MIDDLE_POINT:19854599 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 188 245 1 878 433 XLS3_Contig1229 AT1G21070 transporter-related, low similarity to GDP-Mannose transporter (Arabidopsis thaliana) GI:15487237 [ 18394949 NP_564133.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7376137 CHROM_POS_END:7377799 } -=| MIDDLE_POINT:7376968 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 219 270 1 1213 348 XLS3_Contig1230 AT5G48385 expressed protein [ AT5G48385 30695446 NP_850923.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19626697 CHROM_POS_END:19628938 } -=| MIDDLE_POINT:19627817 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.75 52 154 292 1 943 558 XLS3_Contig1231 AT4G34270 TIP41-like family protein, contains Pfam PF04176: TIP41-like family [ 22329154 NP_195153.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16404142 CHROM_POS_END:16406157 } -=| MIDDLE_POINT:16405149 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 192 289 1 1051 290 XLS3_Contig1232 AT5G14420 copine-related, low similarity to SP|Q99829 Copine I {Homo sapiens} [ 15241400 NP_196946.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4648358 CHROM_POS_END:4650566 } -=| MIDDLE_POINT:4649462 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.88 64 173 267 1 951 468 XLS3_Contig1233 AT2G20610 aminotransferase, putative, similar to nicotianamine aminotransferase from Hordeum vulgare (GI:6498122, GI:6469087) [ 15225387 NP_179650.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:8885231 CHROM_POS_END:8887379 } -=| MIDDLE_POINT:8886305 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.96 53 159 295 1 984 462 XLS3_Contig1234 AT5G36230 eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein, low similarity to SP|Q13144 Translation initiation factor eIF-2B epsilon subunit (eIF-2B GDP-GTP exchange factor) {Homo sapiens} [ 18421544 NP_568534.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:14290749 CHROM_POS_END:14294003 } -=| MIDDLE_POINT:14292376 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 211 262 1 939 411 XLS3_Contig1235 AT5G06390 beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein, contains Pfam profile PF02469: Fasciclin domain [ 42567693 NP_196257.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1952940 CHROM_POS_END:1955048 } -=| MIDDLE_POINT:1953994 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.87 68 160 234 1 880 458 XLS3_Contig1236 AT1G25375 metallo-beta-lactamase family protein [ AT1G25375 18395656 NP_564232.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8900266 CHROM_POS_END:8903207 } -=| MIDDLE_POINT:8901736 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.72 48 135 278 1 943 524 XLS3_Contig1237 AT2G44520 UbiA prenyltransferase family protein, similar to SP|Q12887 Protoheme IX farnesyltransferase, mitochondrial precursor (EC 2.5.1.-) (Heme O synthase) {Homo sapiens}, SP|P21592 COX10 {Saccharomyces cerevisiae} [ 18406556 NP_566019.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18386736 CHROM_POS_END:18388807 } -=| MIDDLE_POINT:18387771 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.61 72 61 84 1 944 431 XLS3_Contig1238 AT5G43270 squamosa promoter-binding protein-like 2 (SPL2), identical to squamosa promoter binding protein-like 2 (Arabidopsis thaliana) GI:5931645 [ 15239820 NP_199141.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17377755 CHROM_POS_END:17379371 } -=| MIDDLE_POINT:17378563 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.34 39 93 233 1 884 419 XLS3_Contig1239 AT1G28310 similar to Dof-type zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:At3g55370.2) [ 79318762 NP_001031100.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9912521 CHROM_POS_END:9913672 } -=| MIDDLE_POINT:9913096 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.42 47 105 223 1 943 325 XLS3_Contig1240 AT1G50010 tubulin alpha-2/alpha-4 chain (TUA2), identical to tubulin alpha-2/alpha-4 chain SP|P29510 GB:P29510 from (Arabidopsis thaliana) [ 15222856 NP_175423.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18521405 CHROM_POS_END:18523397 } -=| MIDDLE_POINT:18522401 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 96 265 274 1 944 450 XLS3_Contig1241 AT5G10560 glycosyl hydrolase family 3 protein, beta-xylosidase, Aspergllus nidulans, EMBL:ANXLND [ 15238197 NP_196618.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3336336 CHROM_POS_END:3339352 } -=| MIDDLE_POINT:3337844 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 59 191 319 1 1296 792 XLS3_Contig1242 AT1G70160 expressed protein, similar to hypothetical protein GI:4455225 from (Arabidopsis thaliana) [ 18409461 NP_564985.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:26423822 CHROM_POS_END:26426008 } -=| MIDDLE_POINT:26424915 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 178 246 1 947 523 XLS3_Contig1243 no_hits_found 0 0 XLS3_Contig1244 AT3G51800 metallopeptidase M24 family protein, similar to SP|P50580 Proliferation-associated protein 2G4 {Mus musculus} [ 30693537 NP_850679.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:19222238 CHROM_POS_END:19224545 } -=| MIDDLE_POINT:19223391 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 222 271 1 930 401 XLS3_Contig1245 AT1G01550 expressed protein [ AT1G01550 18378853 NP_563630.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:200526 CHROM_POS_END:201575 } -=| MIDDLE_POINT:201050 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.65 45 126 280 1 1146 349 XLS3_Contig1246 AT2G30970 aspartate aminotransferase, mitochondrial / transaminase A (ASP1), identical to SP|P46643 Aspartate aminotransferase, mitochondrial precursor (EC 2.6.1.1) (Transaminase A) {Arabidopsis thaliana} [ 15224592 NP_180654.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:13186089 CHROM_POS_END:13188763 } -=| MIDDLE_POINT:13187426 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 224 278 1 946 430 XLS3_Contig1247 no_hits_found 0 0 XLS3_Contig1248 AT4G29720 amine oxidase family protein, similar to polyamine oxidase isoform-2 (Homo sapiens) GI:16554963 [ 15233671 NP_194701.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14553462 CHROM_POS_END:14555063 } -=| MIDDLE_POINT:14554262 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.91 57 181 317 1 1119 533 XLS3_Contig1249 no_hits_found 0 0 XLS3_Contig1250 AT5G50420 expressed protein, strong similarity to unknown protein (gb|AAD50008.1) [ 15240670 NP_199853.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20547679 CHROM_POS_END:20549861 } -=| MIDDLE_POINT:20548770 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.54 46 124 265 1 954 566 XLS3_Contig1251 AT3G20500 calcineurin-like phosphoesterase family protein, contains Pfam profile: PF00149 calcineurin-like phosphoesterase [ 22331208 NP_188686.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7157932 CHROM_POS_END:7160250 } -=| MIDDLE_POINT:7159091 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 318 421 1 1545 437 XLS3_Contig1252 AT5G41950 expressed protein [ AT5G41950 15238238 NP_199010.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16803053 CHROM_POS_END:16806588 } -=| MIDDLE_POINT:16804820 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 62 324 517 1 1587 565 XLS3_Contig1253 AT1G18850 expressed protein [ AT1G18850 18394662 NP_564065.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6504919 CHROM_POS_END:6506118 } -=| MIDDLE_POINT:6505518 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.54 41 110 263 1 961 399 XLS3_Contig1254 AT5G22340 expressed protein [ AT5G22340 79328366 NP_001031922.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7394512 CHROM_POS_END:7396612 } -=| MIDDLE_POINT:7395562 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.65 53 124 231 1 920 340 XLS3_Contig1255 AT4G20960 cytidine/deoxycytidylate deaminase family protein, similar to SP|P25539 Riboflavin biosynthesis protein ribD (Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) (Riboflavin-specific deaminase) [ 18415600 NP_567618.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11212088 CHROM_POS_END:11213541 } -=| MIDDLE_POINT:11212814 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.84 69 140 201 1 868 426 XLS3_Contig1256 AT5G21280 hydroxyproline-rich glycoprotein family protein, contains proline-rich extensin domains, INTERPRO:IPR002965 [ 22326944 NP_680186.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7264097 CHROM_POS_END:7265517 } -=| MIDDLE_POINT:7264807 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.29 40 98 245 1 895 302 XLS3_Contig1257 AT1G52540 protein kinase, putative, contains protein kinase domain, Pfam:PF00069 [ 30695267 NP_564609.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19573967 CHROM_POS_END:19575553 } -=| MIDDLE_POINT:19574760 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.93 70 164 233 1 1038 350 XLS3_Contig1258 AT2G36780 UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase [ 15228034 NP_181216.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15424697 CHROM_POS_END:15426187 } -=| MIDDLE_POINT:15425442 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 48 206 422 1 1298 496 XLS3_Contig1259 AT5G05920 deoxyhypusine synthase, almost identical to deoxyhypusine synthase GI:15431345 from (Arabidopsis thaliana) [ 15239290 NP_196211.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1777782 CHROM_POS_END:1779700 } -=| MIDDLE_POINT:1778741 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 294 356 1 1330 368 XLS3_Contig1260 AT4G27000 RNA-binding protein 45 (RBP45), putative, DNA binding protein ACBF - Nicotiana tabacum, PID:g1899188 [ 18416906 NP_567764.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13554989 CHROM_POS_END:13557769 } -=| MIDDLE_POINT:13556379 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.75 58 136 232 1 985 415 XLS3_Contig1261 AT4G17800 DNA-binding protein-related, contains Pfam domain PF03479: Domain of unknown function (DUF296), found in AT-hook motifs Pfam:PF02178 [ 15236657 NP_193515.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9895562 CHROM_POS_END:9896440 } -=| MIDDLE_POINT:9896001 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 203 305 1 1133 292 XLS3_Contig1262 AT2G15560 expressed protein, contains Pfam profile PF04396: Protein of unknown function, DUF537 [ 30679459 NP_179158.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6795401 CHROM_POS_END:6796870 } -=| MIDDLE_POINT:6796135 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.75 56 143 253 1 924 489 XLS3_Contig1263 no_hits_found 0 0 XLS3_Contig1264 AT3G19290 ABA-responsive element-binding protein 2 (AREB2), almost identical (one amino acid) to GB:AAF27182 from (Arabidopsis thaliana) [ 18402186 NP_566629.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6687962 CHROM_POS_END:6689790 } -=| MIDDLE_POINT:6688876 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.91 48 221 455 1 1531 431 XLS3_Contig1265 AT5G33370 GDSL-motif lipase/hydrolase family protein, similar to family II lipase EXL3 (GI:15054386), EXL1 (GI:15054382), EXL2 (GI:15054384) (Arabidopsis thaliana) [ 15242808 NP_198322.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12620003 CHROM_POS_END:12621900 } -=| MIDDLE_POINT:12620951 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 203 294 1 1048 366 XLS3_Contig1266 AT1G08090 high-affinity nitrate transporter (ACH1), identical to trans-membrane nitrate transporter protein AtNRT2:1 (Arabidopsis thaliana) GI:3747058, high-affinity nitrate transporter ACH1 (Arabidopsis thaliana) GI:3608362 [ 15223123 NP_172288.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2524136 CHROM_POS_END:2525917 } -=| MIDDLE_POINT:2525026 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 239 289 1 910 530 XLS3_Contig1267 AT4G29680 type I phosphodiesterase/nucleotide pyrophosphatase family protein, similar to SP|P06802 Ectonucleotide pyrophosphatase/phosphodiesterase 1 (Plasma-cell membrane glycoprotein PC-1) (Includes: Alkaline phosphodiesterase I (EC 3.1.4.1) [ 15233659 NP_194697.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14538073 CHROM_POS_END:14539563 } -=| MIDDLE_POINT:14538818 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 57 161 279 1 1513 496 XLS3_Contig1268 AT3G22440 hydroxyproline-rich glycoprotein family protein, identical to hydroxyproline-rich glycoprotein (Arabidopsis thaliana) gi|9293881|dbj|BAB01784 [ 18403383 NP_566709.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7959861 CHROM_POS_END:7961893 } -=| MIDDLE_POINT:7960877 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 289 414 1 1331 532 XLS3_Contig1269 AT1G48850 chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative, similar to chorismate synthase from Lycopersicon esculentum (SP|Q42884), Corydalis sempervirens (SP|P27793) [ 18402389 NP_564534.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:18068822 CHROM_POS_END:18071624 } -=| MIDDLE_POINT:18070223 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 224 307 1 936 436 XLS3_Contig1270 AT3G62600 DNAJ heat shock family protein, similar to DnaJ homolog subfamily B member 11 precursor (SP:Q99KV1){Mus musculus} [ 15228802 NP_191819.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:23162014 CHROM_POS_END:23164322 } -=| MIDDLE_POINT:23163168 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.89 77 153 198 1 855 346 XLS3_Contig1271 no_hits_found 0 0 XLS3_Contig1272 AT4G38220 aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative, similar to aminoacylase-1 (N-acyl-L-amino-acid amidohydrolase, ACY-1)(Homo sapiens) SWISS-PROT:Q03154 [ 30691732 NP_849516.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17925245 CHROM_POS_END:17926913 } -=| MIDDLE_POINT:17926079 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 211 302 1 925 433 XLS3_Contig1273 AT3G56440 WD-40 repeat protein family, contains 4 WD-40 repeats (PF00400) (2 weak) [ 30694449 NP_191203.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20937853 CHROM_POS_END:20939776 } -=| MIDDLE_POINT:20938814 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 286 372 1 1790 391 XLS3_Contig1274 AT2G38920 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related, weak similarity to tripartite motif protein TRIM13 (Mus musculus) GI:12407427 [ 30687707 NP_181426.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16255498 CHROM_POS_END:16257663 } -=| MIDDLE_POINT:16256580 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.46 43 106 243 1 1113 335 XLS3_Contig1275 AT4G20070 peptidase M20/M25/M40 family protein, contains similarity to hydantoin utilization protein C (Pseudomonas sp.) SWISS-PROT:Q01264 [ 15235272 NP_193740.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10861558 CHROM_POS_END:10864539 } -=| MIDDLE_POINT:10863048 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 334 463 1 1607 525 XLS3_Contig1276 AT3G18080 glycosyl hydrolase family 1 protein, contains Pfam PF00232 : Glycosyl hydrolase family 1 domain [ 15229584 NP_188436.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6191592 CHROM_POS_END:6194130 } -=| MIDDLE_POINT:6192861 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 242 315 1 943 512 XLS3_Contig1277 AT1G48900 signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C), identical to SP|P49967 Signal recognition particle 54 kDa protein 3 (SRP54) {Arabidopsis thaliana} [ 18402407 NP_564535.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18088640 CHROM_POS_END:18091411 } -=| MIDDLE_POINT:18090025 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 89 211 237 1 934 495 XLS3_Contig1278 AT1G19300 glycosyl transferase family 8 protein, contains Pfam profile: PF01501 Glycosyl transferase family 8 [ 18394719 NP_564077.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6671442 CHROM_POS_END:6672497 } -=| MIDDLE_POINT:6671969 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.96 68 180 261 1 901 351 XLS3_Contig1279 AT5G55630 outward rectifying potassium channel (KCO1), identical to kco1 (Arabidopsis thaliana) gi|2230761|emb|CAA69158 of the 2 pore, 4 transmembrane (2P/4TM) K+ channel family, PMID:11500563 [ 30696631 NP_851196.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:22548944 CHROM_POS_END:22550119 } -=| MIDDLE_POINT:22549531 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.56 44 114 257 1 1002 363 XLS3_Contig1280 AT5G22320 leucine-rich repeat family protein, contains leucine rich repeat (LRR) domains, Pfam:PF00560 [ 18420455 NP_568416.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7388178 CHROM_POS_END:7390429 } -=| MIDDLE_POINT:7389303 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.67 58 122 210 1 1012 452 XLS3_Contig1281 AT4G29840 threonine synthase, chloroplast, identical to SP|Q9S7B5 Threonine synthase, chloroplast precursor (EC 4.2.3.1) (TS) {Arabidopsis thaliana} [ 42573081 NP_974637.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:14598577 CHROM_POS_END:14601020 } -=| MIDDLE_POINT:14599798 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 229 306 1 971 535 XLS3_Contig1282 AT1G16300 glyceraldehyde 3-phosphate dehydrogenase, cytosolic, putative / NAD-dependent glyceraldehyde-3-phosphate dehydrogenase, putative, similar to glyceraldehyde-3-phosphate dehydrogenase (Pinus sylvestris) GI:1100223 [ 15219206 NP_173080.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5574427 CHROM_POS_END:5577400 } -=| MIDDLE_POINT:5575913 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 196 269 1 898 420 XLS3_Contig1283 AT3G61490 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein, weak similarity to SP|P27644 Polygalacturonase (EC 3.2.1.15) (Pectinase) {Agrobacterium tumefaciens} [ 15233124 NP_191708.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:22769414 CHROM_POS_END:22771112 } -=| MIDDLE_POINT:22770263 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.97 73 159 217 1 846 476 XLS3_Contig1284 AT4G17740 C-terminal processing protease, putative, similar to C-terminal protease precursor (Spinacia oleracea) GI:999435 [ 15236628 NP_193509.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9867101 CHROM_POS_END:9869732 } -=| MIDDLE_POINT:9868416 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.73 55 153 278 1 929 515 XLS3_Contig1285 AT5G55050 GDSL-motif lipase/hydrolase family protein, similar to family II lipases EXL3 GI:15054386, EXL1 GI:15054382, EXL2 GI:15054384 from (Arabidopsis thaliana) [ 15240452 NP_200316.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22354971 CHROM_POS_END:22356967 } -=| MIDDLE_POINT:22355969 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.69 46 84 179 1 894 376 XLS3_Contig1286 AT5G09890 similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:At4g14350.1) [ 79327481 NP_001031863.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:3085811 CHROM_POS_END:3088843 } -=| MIDDLE_POINT:3087327 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.94 76 177 230 1 1127 516 XLS3_Contig1287 AT4G30960 CBL-interacting protein kinase 6 (CIPK6), identical to CBL-interacting protein kinase 6 (Arabidopsis thaliana) gi|9280634|gb|AAF86505 [ 15235768 NP_194825.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15067406 CHROM_POS_END:15068731 } -=| MIDDLE_POINT:15068068 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 264 340 1 1197 441 XLS3_Contig1288 AT2G30100 ubiquitin family protein, low similarity to SP|Q9UQ13 Leucine-rich repeat protein SHOC-2 (Ras-binding protein Sur-8) {Homo sapiens} [ 30684470 NP_180571.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12854905 CHROM_POS_END:12858985 } -=| MIDDLE_POINT:12856945 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.81 51 151 294 1 995 897 XLS3_Contig1289 AT3G26050 expressed protein [ AT3G26050 15230980 NP_189234.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9523144 CHROM_POS_END:9525478 } -=| MIDDLE_POINT:9524311 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.25 31 90 284 1 906 533 XLS3_Contig1290 AT5G17200 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein, similar to polygalacturonase (Lycopersicon esculentum) GI:4325090 [ 15237927 NP_197222.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5653526 CHROM_POS_END:5655338 } -=| MIDDLE_POINT:5654432 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.65 45 105 232 1 942 421 XLS3_Contig1291 AT1G62710 vacuolar processing enzyme beta / beta-VPE, identical to SP|Q39044 Vacuolar processing enzyme, beta-isozyme precursor (EC 3.4.22.-) (Beta-VPE) {Arabidopsis thaliana} [ 15221556 NP_176458.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:23227735 CHROM_POS_END:23230522 } -=| MIDDLE_POINT:23229128 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 178 270 1 807 486 XLS3_Contig1292 AT1G63660 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative, similar to SP|P38625 GMP synthase (glutamine-hydrolyzing) (EC 6.3.5.2) (Glutamine amidotransferase) (GMP synthetase) {Saccharomyces cerevisiae} [ 15222505 NP_176553.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:23607790 CHROM_POS_END:23610743 } -=| MIDDLE_POINT:23609266 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 200 266 1 853 534 XLS3_Contig1293 AT1G76490 similar to 3-hydroxy-3-methylglutaryl-CoA reductase 2 / HMG-CoA reductase 2 (HMGR2) [Arabidopsis thaliana] (TAIR:At2g17370.1) [ 79382641 NP_177775.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:28700695 CHROM_POS_END:28703100 } -=| MIDDLE_POINT:28701897 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.95 61 188 304 1 847 642 XLS3_Contig1294 AT2G35660 monooxygenase family protein, nearly identical to CTF2A (GI:4164576)(Plant Physiol. 119, 364 (1999), PGR99-008) [ 18403916 NP_565814.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:14995578 CHROM_POS_END:14997399 } -=| MIDDLE_POINT:14996488 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.8 71 80 112 1 924 439 XLS3_Contig1295 AT3G43230 zinc finger (FYVE type) family protein, contains Pfam domain PF01363: FYVE zinc finger [ 15229244 NP_189909.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15218764 CHROM_POS_END:15220587 } -=| MIDDLE_POINT:15219675 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.67 65 121 186 1 880 485 XLS3_Contig1296 AT3G22550 senescence-associated protein-related, similar to senescence-associated protein SAG102 (GI:22331931) (Arabidopsis thaliana) [ 22331260 NP_188894.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7991834 CHROM_POS_END:7992812 } -=| MIDDLE_POINT:7992323 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.35 37 100 266 1 1112 267 XLS3_Contig1297 AT2G28380 double-stranded RNA-binding domain (DsRBD)-containing protein, contains Pfam profile PF00035: Double-stranded RNA binding motif [ 18401724 NP_565672.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12141175 CHROM_POS_END:12142992 } -=| MIDDLE_POINT:12142083 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 53 232 431 1 1479 434 XLS3_Contig1298 AT5G03540 exocyst subunit EXO70 family protein, contains Pfam domain PF03081: Exo70 exocyst complex subunit [ 22326587 NP_195974.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:889605 CHROM_POS_END:893915 } -=| MIDDLE_POINT:891760 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 300 397 1 1236 638 XLS3_Contig1299 AT4G27585 band 7 family protein, similar to stomatin-like protein (Zea mays) GI:7716464 [ 18417021 NP_567778.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13766990 CHROM_POS_END:13769838 } -=| MIDDLE_POINT:13768414 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 202 274 1 1047 411 XLS3_Contig1300 AT3G16170 acyl-activating enzyme 13 (AAE13), similar to malonyl CoA synthetase GB:AAF28840 from (Bradyrhizobium japonicum) [ 18401035 NP_566537.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5476496 CHROM_POS_END:5480134 } -=| MIDDLE_POINT:5478315 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 377 544 1 1841 544 XLS3_Contig1301 AT4G28706 pfkB-type carbohydrate kinase family protein, contains Pfam profile: PF00294 pfkB family carbohydrate kinase [ 30688079 NP_849466.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:14167811 CHROM_POS_END:14170625 } -=| MIDDLE_POINT:14169218 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.9 65 172 264 1 891 404 XLS3_Contig1302 AT4G08690 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein, contains Pfam PF00650: CRAL/TRIO domain [ 15236573 NP_192609.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:5551518 CHROM_POS_END:5552710 } -=| MIDDLE_POINT:5552114 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.68 60 113 187 1 914 301 XLS3_Contig1303 AT4G01050 hydroxyproline-rich glycoprotein family protein [ AT4G01050 18411523 NP_567209.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:455874 CHROM_POS_END:458175 } -=| MIDDLE_POINT:457024 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.88 58 173 297 1 932 466 XLS3_Contig1304 AT1G11440 expressed protein [ AT1G11440 15220385 NP_172611.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3849418 CHROM_POS_END:3850509 } -=| MIDDLE_POINT:3849963 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.2 36 64 177 1 1058 363 XLS3_Contig1305 AT3G63520 9-cis-epoxycarotenoid dioxygenase / neoxanthin cleavage enzyme / NCED1 / carotenoid cleavage dioxygenase 1 (CCD1), identical to putative 9-cis-epoxy-carotenoid dioxygenase (GI:3096910) [ 15229451 NP_191911.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:23463915 CHROM_POS_END:23466871 } -=| MIDDLE_POINT:23465393 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 214 275 1 881 538 XLS3_Contig1306 AT4G23430 short-chain dehydrogenase/reductase (SDR) family protein, contains INTERPRO family IPR002198 Short-chain dehydrogenase/reductase (SDR) superfamily [ 30686197 NP_849428.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:12229181 CHROM_POS_END:12231503 } -=| MIDDLE_POINT:12230342 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 61 193 315 1 1202 322 XLS3_Contig1307 AT2G27350 similar to SEC-C motif-containing protein / OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:At5g67170.2) [ 79602271 NP_973546.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:11706858 CHROM_POS_END:11709441 } -=| MIDDLE_POINT:11708149 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 60 255 425 1 1843 506 XLS3_Contig1308 AT5G43600 N-carbamyl-L-amino acid hydrolase, putative, similar to N-carbamoyl-L-amino acid hydrolase (Bacillus stearothermophilus) SWISS-PROT:Q53389 [ 22327548 NP_199173.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17529878 CHROM_POS_END:17532507 } -=| MIDDLE_POINT:17531192 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 337 447 1 1514 476 XLS3_Contig1309 AT2G21270 ubiquitin fusion degradation UFD1 family protein, similar to SP|P70362 Ubiquitin fusion degradation protein 1 homolog (UB fusion protein 1) {Mus musculus} [ 18399646 NP_565504.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9115207 CHROM_POS_END:9117093 } -=| MIDDLE_POINT:9116150 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 201 255 1 917 319 XLS3_Contig1310 AT4G00660 DEAD/DEAH box helicase, putative, similar to ATP-dependent RNA helicases [ 22328183 NP_191975.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:274638 CHROM_POS_END:277438 } -=| MIDDLE_POINT:276038 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.99 66 192 287 1 966 505 XLS3_Contig1311 AT5G56750 Ndr family protein, similar to SP|O23969 Pollen specific protein SF21 {Helianthus annuus} [ 15241926 NP_200486.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22975212 CHROM_POS_END:22977832 } -=| MIDDLE_POINT:22976522 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 224 283 1 950 346 XLS3_Contig1312 AT5G47770 farnesyl pyrophosphate synthetase 1, mitochondrial (FPS1) / FPP synthetase 1 / farnesyl diphosphate synthase 1, identical to SP|Q09152 Farnesyl pyrophosphate synthetase 1, mitochondrial precursor (FPP synthetase 1) (FPS 1) (Farnesyl diphosphate synthetase 1) (Includes: Dimethylallyltransferase (EC 2.5.1.1) [ 15238801 NP_199588.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19362523 CHROM_POS_END:19364641 } -=| MIDDLE_POINT:19363582 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 211 268 1 1023 384 XLS3_Contig1313 AT3G11170 omega-3 fatty acid desaturase, chloroplast (FAD7) (FADD), identical to omega-3 fatty acid desaturase, chloroplast precursor SP:P46310 (Arabidopsis thaliana (Mouse-ear cress)) [ 15229692 NP_187727.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3499965 CHROM_POS_END:3502132 } -=| MIDDLE_POINT:3501048 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 214 329 1 987 446 XLS3_Contig1314 AT1G28120 expressed protein [ AT1G28120 18396650 NP_564299.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9813206 CHROM_POS_END:9815130 } -=| MIDDLE_POINT:9814168 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.82 68 150 220 1 906 306 XLS3_Contig1315 AT4G39980 2-dehydro-3-deoxyphosphoheptonate aldolase 1 / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 / DAHP synthetase 1 (DHS1), nearly identical to SP|P29965 [ 15236093 NP_195708.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18539648 CHROM_POS_END:18541826 } -=| MIDDLE_POINT:18540737 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 280 372 1 1146 525 XLS3_Contig1316 AT5G43060 cysteine proteinase, putative / thiol protease, putative, similar to cysteine proteinase RD21A precursor (thiol protease) GI:435619, SP:P43297 from (Arabidopsis thaliana) [ 18422289 NP_568620.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17287012 CHROM_POS_END:17289345 } -=| MIDDLE_POINT:17288178 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 292 428 1 1307 463 XLS3_Contig1317 AT3G02740 aspartyl protease family protein, contains Pfam profile: PF00026 eukaryotic aspartyl protease [ 15232960 NP_186923.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:590568 CHROM_POS_END:593096 } -=| MIDDLE_POINT:591832 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.97 54 181 331 1 1362 488 XLS3_Contig1318 AT1G26850 dehydration-responsive family protein, similar to early-responsive to dehydration stress ERD3 protein (Arabidopsis thaliana) GI:15320410 [ 18396075 NP_564265.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9301133 CHROM_POS_END:9303419 } -=| MIDDLE_POINT:9302276 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 296 394 1 1413 616 XLS3_Contig1319 AT1G79340 latex-abundant protein, putative (AMC7) / caspase family protein, similar to latex-abundant protein (Hevea brasiliensis) gb:AAD13216 [ 15219345 NP_178052.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:29847742 CHROM_POS_END:29849261 } -=| MIDDLE_POINT:29848501 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.95 68 164 241 1 865 418 XLS3_Contig1320 AT5G57660 zinc finger (B-box type) family protein, contains Pfam domain, PF00643: B-box zinc finger [ 18424009 NP_568863.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:23372799 CHROM_POS_END:23373955 } -=| MIDDLE_POINT:23373377 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.52 43 112 260 1 925 355 XLS3_Contig1321 AT1G55920 serine O-acetyltransferase, putative, identical to GI:608677 from (Arabidopsis thaliana) [ 15222799 NP_175988.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20916043 CHROM_POS_END:20916987 } -=| MIDDLE_POINT:20916515 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.58 68 107 157 1 997 314 XLS3_Contig1322 AT2G24360 serine/threonine/tyrosine kinase, putative, similar to serine/threonine/tyrosine kinase (Arachis hypogaea) gi|13124865|gb|AAK11734 [ 18400528 NP_565568.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:10371822 CHROM_POS_END:10373155 } -=| MIDDLE_POINT:10372488 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.85 67 166 247 1 1069 411 XLS3_Contig1323 AT4G37110 expressed protein [ AT4G37110 42567480 NP_195428.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17484337 CHROM_POS_END:17486191 } -=| MIDDLE_POINT:17485264 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.65 49 120 244 1 934 417 XLS3_Contig1324 AT4G29510 protein arginine N-methyltransferase, putative, similar to protein arginine N-methyltransferase 1-variant 2 (Homo sapiens) GI:7453575 [ 15233606 NP_194680.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:14491745 CHROM_POS_END:14493758 } -=| MIDDLE_POINT:14492751 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 285 370 1 1364 390 XLS3_Contig1325 AT1G02170 latex-abundant family protein (AMC1) / caspase family protein, contains similarity to latex-abundant protein (Hevea brasiliensis) gb:AAD13216 [ 30678252 NP_171719.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:411883 CHROM_POS_END:413426 } -=| MIDDLE_POINT:412654 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 230 299 1 1042 367 XLS3_Contig1326 AT3G09180 expressed protein [ AT3G09180 18398414 NP_566345.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2819283 CHROM_POS_END:2821101 } -=| MIDDLE_POINT:2820192 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.8 56 165 292 1 879 402 XLS3_Contig1327 no_hits_found 0 0 XLS3_Contig1328 AT1G58030 amino acid permease family protein, similar to SP|P18581 Low-affinity cationic amino acid transporter-2 (CAT-2) (T-cell early activation protein) {Mus musculus} [ 30696198 NP_849822.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21467850 CHROM_POS_END:21471806 } -=| MIDDLE_POINT:21469828 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.98 69 174 251 1 896 635 XLS3_Contig1329 AT3G54690 sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein, similar to SP|Q47334 Polysialic acid capsule expression protein kpsF {Escherichia coli} [ 15232565 NP_191029.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20257564 CHROM_POS_END:20258788 } -=| MIDDLE_POINT:20258176 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 192 256 1 954 350 XLS3_Contig1330 AT3G24490 expressed protein, similar to 6b-interacting protein 1 (NtSIP1) (Nicotiana tabacum) GI:18149189 [ 15230124 NP_189092.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8911029 CHROM_POS_END:8912030 } -=| MIDDLE_POINT:8911529 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.34 45 80 176 1 965 333 XLS3_Contig1331 AT2G28760 NAD-dependent epimerase/dehydratase family protein, similar to UDP-glucuronic acid decarboxylase Uxs1p from Filobasidiella neoformans GI:14318327 [ 42570963 NP_973555.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:12343546 CHROM_POS_END:12345719 } -=| MIDDLE_POINT:12344632 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 93 254 273 1 988 343 XLS3_Contig1332 AT3G25640 expressed protein, contains Pfam profile PF04759: Protein of unknown function, DUF617 [ 15230862 NP_189192.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9335012 CHROM_POS_END:9335815 } -=| MIDDLE_POINT:9335413 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.5 51 120 235 1 885 267 XLS3_Contig1333 AT3G09770 zinc finger (C3HC4-type RING finger) family protein, contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) [ 18398633 NP_566356.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2996407 CHROM_POS_END:2997840 } -=| MIDDLE_POINT:2997123 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 57 200 346 1 1343 388 XLS3_Contig1334 AT1G62290 aspartyl protease family protein, contains Pfam profiles: PF00026 eukaryotic aspartyl protease, PF03489 surfactant protein B, PF05184 saposin-like type B, region 1 [ 22330379 NP_176419.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:23013772 CHROM_POS_END:23016346 } -=| MIDDLE_POINT:23015059 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 59 237 401 1 1325 513 XLS3_Contig1335 AT3G14310 pectinesterase family protein, contains Pfam profiles: PF01095 pectinesterase, PF04043 plant invertase/pectin methylesterase inhibitor [ 15231828 NP_188048.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4772221 CHROM_POS_END:4775102 } -=| MIDDLE_POINT:4773661 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 53 225 421 1 1189 592 XLS3_Contig1336 AT1G65260 PspA/IM30 family protein, contains Pfam PF04012: PspA/IM30 family profile [ 18408237 NP_564846.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:24239992 CHROM_POS_END:24244091 } -=| MIDDLE_POINT:24242041 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.88 71 177 247 1 951 330 XLS3_Contig1337 AT1G11820 similar to glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative [Arabidopsis thaliana] (TAIR:At2g01630.1) [ 79342176 NP_172647.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3991258 CHROM_POS_END:3993326 } -=| MIDDLE_POINT:3992292 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 189 260 1 884 384 XLS3_Contig1338 AT5G01710 expressed protein [ AT5G01710 15241038 NP_195791.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:263706 CHROM_POS_END:265247 } -=| MIDDLE_POINT:264476 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.45 49 98 200 1 976 513 XLS3_Contig1339 AT1G51310 tRNA methyl transferase family protein, contains Pfam PF03054: tRNA methyl transferase profile [ 15223816 NP_175542.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19022853 CHROM_POS_END:19025175 } -=| MIDDLE_POINT:19024014 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 178 231 1 962 421 XLS3_Contig1340 AT1G60940 serine/threonine protein kinase, putative, similar to serine/threonine-protein kinase ASK1 from (Arabidopsis thaliana), SWISS-PROT:P43291 [ 15219836 NP_176290.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:22443063 CHROM_POS_END:22445561 } -=| MIDDLE_POINT:22444312 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.75 89 137 153 1 977 361 XLS3_Contig1341 AT3G51740 leucine-rich repeat transmembrane protein kinase, putative, brassinosteroid-insensitive protein BRI1 - Arabidopsis thaliana, PIR:T09356 [ 15231029 NP_190742.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19200227 CHROM_POS_END:19202821 } -=| MIDDLE_POINT:19201524 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 56 274 486 1 1363 836 XLS3_Contig1342 AT5G60990 DEAD/DEAH box helicase, putative (RH10), probable replication protein A1, Oryza sativa, EMBL:AF009179 [ 18424420 NP_568931.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:24563827 CHROM_POS_END:24566374 } -=| MIDDLE_POINT:24565100 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 196 257 1 941 456 XLS3_Contig1343 AT4G22140 similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:At4g04260.1) [ 79481800 NP_193945.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:11728568 CHROM_POS_END:11730242 } -=| MIDDLE_POINT:11729405 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 167 206 1 891 234 XLS3_Contig1344 AT3G10700 GHMP kinase family protein, contains Pfam profile: PF00288 GHMP kinases putative ATP-binding proteins [ 22330971 NP_187681.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3346794 CHROM_POS_END:3350868 } -=| MIDDLE_POINT:3348831 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.86 67 155 228 1 924 424 XLS3_Contig1345 AT2G20360 expressed protein [ AT2G20360 18399328 NP_565469.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8793151 CHROM_POS_END:8796179 } -=| MIDDLE_POINT:8794665 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 230 301 1 1004 402 XLS3_Contig1346 AT1G04510 similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:At2g33340.1) [ 79316596 NP_001030958.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1226748 CHROM_POS_END:1230591 } -=| MIDDLE_POINT:1228669 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 375 530 1 1855 523 XLS3_Contig1347 AT4G20870 fatty acid hydroxylase, putative, similar to fatty acid hydroxylase Fah1p GB:AF021804 GI:2736147 from (Arabidopsis thaliana) [ 15233426 NP_193819.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11174631 CHROM_POS_END:11175889 } -=| MIDDLE_POINT:11175260 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.95 72 152 211 1 917 237 XLS3_Contig1348 AT2G16090 zinc finger protein-related, contains similarity to zinc finger proteins and Pfam domain, PF01485: IBR domain [ 22325707 NP_179206.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6994449 CHROM_POS_END:6996904 } -=| MIDDLE_POINT:6995676 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.87 70 157 223 1 896 593 XLS3_Contig1349 AT1G21890 nodulin MtN21 family protein, similar to MtN21 GI:2598575 (root nodule development) from (Medicago truncatula) [ 15219123 NP_173607.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7682797 CHROM_POS_END:7685570 } -=| MIDDLE_POINT:7684183 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 61 182 298 1 1063 389 XLS3_Contig1350 AT2G38940 phosphate transporter (PT2), identical to phosphate transporter (AtPT2) (Arabidopsis thaliana) GI:1502430 [ 15224985 NP_181428.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16265578 CHROM_POS_END:16267182 } -=| MIDDLE_POINT:16266380 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 212 270 1 870 534 XLS3_Contig1351 AT3G23880 F-box family protein, contains F-box domain Pfam:PF00646 [ 15229536 NP_189030.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8622068 CHROM_POS_END:8623162 } -=| MIDDLE_POINT:8622615 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.21 28 73 255 1 926 364 XLS3_Contig1352 AT5G15050 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein, contains Pfam profile: PF02485 Core-2/I-Branching enzyme [ 15242199 NP_197009.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4871823 CHROM_POS_END:4873457 } -=| MIDDLE_POINT:4872640 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.8 66 152 229 1 928 434 XLS3_Contig1353 AT2G02040 peptide transporter (PTR2-B) / oligopeptide transporter 1-1, putative (OPT1-1), identical to peptide transporter PTR2-B SP:P46032 from (Arabidopsis thaliana) [ 15226861 NP_178313.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:487541 CHROM_POS_END:489706 } -=| MIDDLE_POINT:488623 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 219 289 1 988 585 XLS3_Contig1354 AT1G15110 phosphatidyl serine synthase family protein, contains Pfam profile: PF03034 phosphatidyl serine synthase [ 42562073 NP_172963.3 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5199589 CHROM_POS_END:5201903 } -=| MIDDLE_POINT:5200746 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 126 167 1 956 425 XLS3_Contig1355 AT5G64500 membrane protein-related, contains weak similarity to spinster type IV (GI:12003976) (Drosophila melanogaster) [ 15237714 NP_201255.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:25797737 CHROM_POS_END:25800700 } -=| MIDDLE_POINT:25799218 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 211 311 1 1191 484 XLS3_Contig1356 AT4G29680 type I phosphodiesterase/nucleotide pyrophosphatase family protein, similar to SP|P06802 Ectonucleotide pyrophosphatase/phosphodiesterase 1 (Plasma-cell membrane glycoprotein PC-1) (Includes: Alkaline phosphodiesterase I (EC 3.1.4.1) [ 15233659 NP_194697.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14538073 CHROM_POS_END:14539563 } -=| MIDDLE_POINT:14538818 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 186 276 1 941 496 XLS3_Contig1357 AT5G04870 calcium-dependent protein kinase isoform AK1 (AK1), identical to calcium-dependent protein kinase, isoform AK1 (CDPK) (Arabidopsis thaliana) SWISS-PROT:Q06850 [ 15238353 NP_196107.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1417016 CHROM_POS_END:1419878 } -=| MIDDLE_POINT:1418447 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.78 62 159 254 1 1030 610 XLS3_Contig1358 AT1G19715 jacalin lectin family protein, similar to agglutinin (Castanea crenata) GI:25528883 [ 30686497 NP_849691.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6816925 CHROM_POS_END:6819423 } -=| MIDDLE_POINT:6818174 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.15 37 57 154 1 1077 595 XLS3_Contig1359 AT1G05850 chitinase-like protein 1 (CTL1), similar to class I chitinase GI:7798656 from (Halimolobos perplexa var. perplexa) [ 15221283 NP_172076.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1766832 CHROM_POS_END:1768116 } -=| MIDDLE_POINT:1767474 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 190 283 1 1084 321 XLS3_Contig1360 AT1G30580 expressed protein [ AT1G30580 15221444 NP_174346.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:10831935 CHROM_POS_END:10835436 } -=| MIDDLE_POINT:10833685 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 84 239 282 1 968 394 XLS3_Contig1361 AT3G19553 amino acid permease family protein, weak similarity to aspartate/glutamate transporter 1 (Mus musculus) GI:21322754 [ 15230886 NP_188589.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6790994 CHROM_POS_END:6792513 } -=| MIDDLE_POINT:6791753 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 196 258 1 981 479 XLS3_Contig1362 AT1G14380 calmodulin-binding family protein, contains Pfam profile PF00612: IQ calmodulin-binding motif [ 18394111 NP_563950.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4918274 CHROM_POS_END:4920756 } -=| MIDDLE_POINT:4919515 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.2 43 65 148 1 933 664 XLS3_Contig1363 AT5G05850 leucine-rich repeat family protein, contains Pfam PF00560: Leucine Rich Repeat domains [ 15239256 NP_196204.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1762692 CHROM_POS_END:1764610 } -=| MIDDLE_POINT:1763651 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.74 49 148 301 1 989 506 XLS3_Contig1364 AT5G20350 similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:At2g14250.1) [ 79517230 NP_197535.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6876774 CHROM_POS_END:6881104 } -=| MIDDLE_POINT:6878939 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 300 399 1 1364 620 XLS3_Contig1365 AT5G16890 exostosin family protein, contains Pfam profile: PF03016 Exostosin family [ 15237870 NP_197191.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5551667 CHROM_POS_END:5554744 } -=| MIDDLE_POINT:5553205 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.49 52 114 219 1 837 511 XLS3_Contig1366 AT4G32940 vacuolar processing enzyme gamma / gamma-VPE, nearly identical to SP|Q39119 Vacuolar processing enzyme, gamma-isozyme precursor (EC 3.4.22.-) (Gamma-VPE) {Arabidopsis thaliana} [ 15233996 NP_195020.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15900560 CHROM_POS_END:15903164 } -=| MIDDLE_POINT:15901862 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 206 275 1 872 494 XLS3_Contig1367 AT4G37930 glycine hydroxymethyltransferase / serine hydroxymethyltransferase / serine/threonine aldolase (SHM1), identical to serine hydroxymethyl transferase (Arabidopsis thaliana) GI:6899945 [ 15235745 NP_195506.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17831885 CHROM_POS_END:17834736 } -=| MIDDLE_POINT:17833310 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 89 292 328 1 1054 517 XLS3_Contig1368 AT3G20300 expressed protein [ AT3G20300 18402564 NP_566658.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7079838 CHROM_POS_END:7081815 } -=| MIDDLE_POINT:7080826 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.93 57 172 299 1 985 452 XLS3_Contig1369 AT1G63260 senescence-associated family protein, similar to senescence-associated protein 5 (Hemerocallis hybrid cultivar) gi|3551954|gb|AAC34855 [ 42562905 NP_176515.3 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:23470770 CHROM_POS_END:23472610 } -=| MIDDLE_POINT:23471690 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 164 239 1 963 284 XLS3_Contig1370 AT2G02710 PAC motif-containing protein, similar to nonphototropic hypocotyl 1 (Zea mays) GI:2687358 [ 18395411 NP_565288.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:758811 CHROM_POS_END:760607 } -=| MIDDLE_POINT:759709 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.82 54 163 298 1 1378 399 XLS3_Contig1371 AT1G22940 thiamin biosynthesis protein, putative, strong similarity to hydroxymethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase (BTH1) GI:7488455 from (Brassica napus) [ 30688130 NP_173707.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8122373 CHROM_POS_END:8124897 } -=| MIDDLE_POINT:8123635 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.93 71 169 235 1 922 522 XLS3_Contig1372 AT5G54390 inositol monophosphatase family protein, similar to SP|Q42546 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) {Arabidopsis thaliana} [ 15239631 NP_200250.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22103359 CHROM_POS_END:22104812 } -=| MIDDLE_POINT:22104085 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.67 57 125 218 1 1028 373 XLS3_Contig1373 no_hits_found 0 0 XLS3_Contig1374 AT5G42970 COP9 signalosome complex subunit 4 / CSN complex subunit 4 (CSN4) (COP8) (FUS4), FUSCA4, COP8, CSN4 [ 15239134 NP_199111.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17254698 CHROM_POS_END:17257877 } -=| MIDDLE_POINT:17256287 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 86 248 287 1 932 397 XLS3_Contig1375 AT5G12470 expressed protein [ AT5G12470 18416870 NP_568280.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4044953 CHROM_POS_END:4047293 } -=| MIDDLE_POINT:4046123 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.73 59 144 241 1 991 386 XLS3_Contig1376 AT5G04420 kelch repeat-containing protein, low similarity to rngB protein, Dictyostelium discoideum, PIR:S68824 [ 15237715 NP_196062.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1246868 CHROM_POS_END:1249456 } -=| MIDDLE_POINT:1248162 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.91 64 153 237 1 959 514 XLS3_Contig1377 AT4G08810 expressed protein [ AT4G08810 15236611 NP_192621.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5616201 CHROM_POS_END:5617859 } -=| MIDDLE_POINT:5617030 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 199 307 1 1478 552 XLS3_Contig1378 AT4G04880 adenosine/AMP deaminase family protein, low similarity to SP|P03958 Adenosine deaminase (EC 3.5.4.4) (Adenosine aminohydrolase) {Mus musculus} [ 22328354 NP_192397.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2465053 CHROM_POS_END:2467101 } -=| MIDDLE_POINT:2466077 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 244 349 1 1368 355 XLS3_Contig1379 AT5G11720 alpha-glucosidase 1 (AGLU1), identical to alpha-glucosidase 1 (Arabidopsis thaliana) GI:2323344 [ 15239154 NP_196733.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3776841 CHROM_POS_END:3780026 } -=| MIDDLE_POINT:3778433 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 56 185 326 1 1059 902 XLS3_Contig1380 no_hits_found 0 0 XLS3_Contig1381 AT2G18540 cupin family protein, contains Pfam profile PF00190: Cupin [ 42569129 NP_179444.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8049464 CHROM_POS_END:8052090 } -=| MIDDLE_POINT:8050777 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.41 36 88 240 1 938 707 XLS3_Contig1382 AT3G46520 actin 12 (ACT12), identical to SP|P53497 Actin 12 {Arabidopsis thaliana} [ 15231447 NP_190236.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17139552 CHROM_POS_END:17140966 } -=| MIDDLE_POINT:17140259 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 96 291 301 1 1010 377 XLS3_Contig1383 no_hits_found 0 0 XLS3_Contig1384 AT1G11600 cytochrome P450, putative, similar to cytochrome P450 77A2 (CYPLXXVIIA2) (P-450EG5) (Solanum melongena) and cytochrome P450 77A3 (SP:O48928) (Glycine max) [ 15221065 NP_172626.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3902090 CHROM_POS_END:3903622 } -=| MIDDLE_POINT:3902856 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.96 64 163 253 1 822 510 XLS3_Contig1385 no_hits_found 0 0 XLS3_Contig1386 AT3G21720 isocitrate lyase, putative, similar to isocitrate lyase GI:167144 from (Brassica napus) [ 30686361 NP_188809.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7652796 CHROM_POS_END:7655880 } -=| MIDDLE_POINT:7654338 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 90 239 263 1 846 576 XLS3_Contig1387 AT3G13062 expressed protein, weak similarity to SP|Q9UKL6 Phosphatidylcholine transfer protein (PC-TP) {Homo sapiens} [ 30682453 NP_850573.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4184784 CHROM_POS_END:4187275 } -=| MIDDLE_POINT:4186029 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.83 55 154 277 1 875 440 XLS3_Contig1388 AT5G47380 expressed protein, contains Pfam profile PF04784: Protein of unknown function, DUF547 [ 30695170 NP_199549.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19238699 CHROM_POS_END:19241698 } -=| MIDDLE_POINT:19240198 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.42 48 103 214 1 846 618 XLS3_Contig1389 AT1G72710 casein kinase, putative, similar to casein kinase I, delta isoform (Arabidopsis thaliana) SWISS-PROT:P42158 [ 15218569 NP_177415.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:27376215 CHROM_POS_END:27379840 } -=| MIDDLE_POINT:27378027 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 89 245 273 1 1040 465 XLS3_Contig1390 AT3G02360 6-phosphogluconate dehydrogenase family protein, contains Pfam profiles: PF00393 6-phosphogluconate dehydrogenase C-terminal domain, PF03446 NAD binding domain of 6-phosphogluconate [ 30678559 NP_850502.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:482505 CHROM_POS_END:483965 } -=| MIDDLE_POINT:483235 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 91 239 262 1 918 486 XLS3_Contig1391 AT2G37990 ribosome biogenesis regulatory protein (RRS1) family protein, contains Pfam profile PF04939: Ribosome biogenesis regulatory protein (RRS1) [ 18404610 NP_565878.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15907791 CHROM_POS_END:15910106 } -=| MIDDLE_POINT:15908948 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 183 274 1 905 318 XLS3_Contig1392 AT2G37460 nodulin MtN21 family protein, similar to MtN21 GI:2598575 (root nodule development) from (Medicago truncatula) [ 15224291 NP_181282.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15733745 CHROM_POS_END:15736088 } -=| MIDDLE_POINT:15734916 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 230 343 1 1180 380 XLS3_Contig1393 AT4G13400 expressed protein [ AT4G13400 42566752 NP_193076.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7787903 CHROM_POS_END:7791145 } -=| MIDDLE_POINT:7789524 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.96 67 162 241 1 838 319 XLS3_Contig1394 AT5G64970 mitochondrial substrate carrier family protein, contains Pfam profile: PF00153 mitochondrial carrier protein [ 15238315 NP_201302.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:25976032 CHROM_POS_END:25977669 } -=| MIDDLE_POINT:25976850 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.86 56 173 306 1 1130 428 XLS3_Contig1395 AT5G13710 sterol 24-C-methyltransferase, putative, similar to SP:P25087 Sterol 24-C-methyltransferase, Delta(24)-sterol C- methyltransferase, Saccharomyces cerevisiae [ 15240691 NP_196875.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4424051 CHROM_POS_END:4426869 } -=| MIDDLE_POINT:4425460 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.95 87 100 114 1 971 336 XLS3_Contig1396 no_hits_found 0 0 XLS3_Contig1397 AT4G26640 WRKY family transcription factor, contains Pfam profile: PF03106 WRKY DNA -binding domain [ 30687299 NP_849450.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:13437304 CHROM_POS_END:13440699 } -=| MIDDLE_POINT:13439001 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.59 44 130 290 1 976 557 XLS3_Contig1398 AT2G17620 cyclin, putative (CYC2a), similar to cyclin 2b protein (Arabidopsis thaliana) GI:509423 [ 15227875 NP_179353.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7671246 CHROM_POS_END:7673343 } -=| MIDDLE_POINT:7672294 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 198 285 1 1599 429 XLS3_Contig1399 AT2G03200 aspartyl protease family protein, contains Pfam domain, PF00026: eukaryotic aspartyl protease [ 30678047 NP_565298.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:966503 CHROM_POS_END:967888 } -=| MIDDLE_POINT:967195 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.83 56 159 280 1 994 461 XLS3_Contig1400 AT1G04900 expressed protein, contains Pfam PF02636: Uncharacterized ACR, COG1565 [ 18390452 NP_563721.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1383911 CHROM_POS_END:1387560 } -=| MIDDLE_POINT:1385735 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 200 286 1 1034 442 XLS3_Contig1401 no_hits_found 0 0 XLS3_Contig1402 AT2G13650 GDP-mannose transporter (GONST1), identical to GDP-mannose transporter SP:Q941R4 from (Arabidopsis thaliana) [ 18397301 NP_565357.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:5694666 CHROM_POS_END:5697385 } -=| MIDDLE_POINT:5696025 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.42 67 88 130 1 950 333 XLS3_Contig1403 AT1G01830 armadillo/beta-catenin repeat family protein, armadillo/beta-catenin-like repeats, Pfam:PF00514 [ 18378889 NP_563637.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:298717 CHROM_POS_END:300441 } -=| MIDDLE_POINT:299579 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 190 292 1 1066 574 XLS3_Contig1404 AT3G02350 glycosyl transferase family 8 protein, contains Pfam profile: PF01501 glycosyl transferase family 8 [ 18396159 NP_566170.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:479255 CHROM_POS_END:481185 } -=| MIDDLE_POINT:480220 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.68 66 131 198 1 899 561 XLS3_Contig1405 AT2G29660 zinc finger (C2H2 type) family protein, contains zinc finger, C2H2 type, domain, PROSITE:PS00028 [ 18402112 NP_565684.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12686423 CHROM_POS_END:12687544 } -=| MIDDLE_POINT:12686983 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.59 47 129 271 1 1011 373 XLS3_Contig1406 AT5G27730 expressed protein [ AT5G27730 18421151 NP_568500.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9820315 CHROM_POS_END:9822872 } -=| MIDDLE_POINT:9821593 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.69 47 127 269 1 1002 472 XLS3_Contig1407 AT1G07360 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein, similar to SP|O59800 Cell cycle control protein cwf5 {Schizosaccharomyces pombe}, RNA Binding Protein 47 (Nicotiana plumbaginifolia) GI:9663769 [ 18390760 NP_563788.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2260560 CHROM_POS_END:2262793 } -=| MIDDLE_POINT:2261676 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 89 220 246 1 849 481 XLS3_Contig1408 AT3G01090 Snf1-related protein kinase (KIN10) (SKIN10), identical to Snf1-related protein kinase, KIN10 SP:Q38997 from (Arabidopsis thaliana) [ 30678280 NP_850488.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:31444 CHROM_POS_END:34150 } -=| MIDDLE_POINT:32797 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 242 284 1 938 535 XLS3_Contig1409 AT4G11350 similar to fringe-related protein [Arabidopsis thaliana] (TAIR:At4g23490.1) [ 79469221 NP_192874.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:6901709 CHROM_POS_END:6904155 } -=| MIDDLE_POINT:6902932 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.49 51 114 221 1 1013 507 XLS3_Contig1410 AT2G40750 WRKY family transcription factor, contains Pfam profile: PF03106 WRKY DNA -binding domain [ 15226740 NP_181607.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17007714 CHROM_POS_END:17009432 } -=| MIDDLE_POINT:17008573 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.35 30 106 343 1 1074 346 XLS3_Contig1411 AT5G62790 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR), nearly identical to 1-deoxy-d-xylulose-5-phosphate reductoisomerase (Arabidopsis thaliana) GI:4886307 [ 15241970 NP_201085.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:25231584 CHROM_POS_END:25234518 } -=| MIDDLE_POINT:25233051 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 208 271 1 965 477 XLS3_Contig1412 AT1G19920 sulfate adenylyltransferase 2 / ATP-sulfurylase 2 (ASA1) (MET3-1) (APS2), identical to ATP sulfurylase (APS2) (Arabidopsis thaliana) GI:1575324 [ 18394801 NP_564099.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6914826 CHROM_POS_END:6916648 } -=| MIDDLE_POINT:6915737 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.95 73 157 214 1 1044 476 XLS3_Contig1413 AT5G25560 zinc finger (C3HC4-type RING finger) family protein, contains Pfam domain PF00097: Zinc finger, C3HC4 type (RING finger) [ 42568081 NP_197938.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8899489 CHROM_POS_END:8901394 } -=| MIDDLE_POINT:8900441 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.62 76 97 127 1 957 308 XLS3_Contig1414 AT3G46870 pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat [ 15232674 NP_190271.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17273996 CHROM_POS_END:17275007 } -=| MIDDLE_POINT:17274501 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.81 80 138 172 1 821 257 XLS3_Contig1415 AT1G31870 expressed protein [ AT1G31870 15222498 NP_174470.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:11437249 CHROM_POS_END:11439801 } -=| MIDDLE_POINT:11438525 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 48 274 560 1 1493 561 XLS3_Contig1416 AT3G02875 IAA-amino acid hydrolase 1 (ILR1), identical to IAA-amino acid hydrolase 1 (ILR1) (Arabidopsis thaliana) SWISS-PROT:P54968 [ 15233011 NP_186937.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:632000 CHROM_POS_END:633866 } -=| MIDDLE_POINT:632933 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.99 62 176 281 1 932 442 XLS3_Contig1417 AT1G76460 RNA recognition motif (RRM)-containing protein, low similarity to RRM-containing protein SEB-4 (Xenopus laevis) GI:8895698 [ 22330665 NP_565132.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:28691826 CHROM_POS_END:28693400 } -=| MIDDLE_POINT:28692613 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.77 62 151 240 1 1153 285 XLS3_Contig1418 AT3G10030 aspartate/glutamate/uridylate kinase family protein, low similarity to SP|Q9Z5K8 Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate kinase) (UMP kinase) {Lactococcus lactis} [ 18398728 NP_566366.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3092282 CHROM_POS_END:3094836 } -=| MIDDLE_POINT:3093559 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 49 166 337 1 1277 542 XLS3_Contig1419 AT1G27700 expressed protein [ AT1G27700 18396454 NP_564292.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9640381 CHROM_POS_END:9641739 } -=| MIDDLE_POINT:9641060 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.4 46 88 190 1 885 297 XLS3_Contig1420 AT3G57610 adenylosuccinate synthetase (ADSS), identical to adenylosuccinate synthetase, chloroplast precursor (EC 6.3.4.4) (IMP-- aspartate ligase) (AdSS) (AMPSase) (Swiss-Prot:Q96529) (Arabidopsis thaliana) [ 15230358 NP_191320.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21345496 CHROM_POS_END:21347580 } -=| MIDDLE_POINT:21346538 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 231 314 1 956 490 XLS3_Contig1421 AT5G02820 DNA topoisomerase VIA (SPO11), identical to topoisomerase 6 subunit A (spo11) (Arabidopsis thaliana) GI:12331186 [ 15241959 NP_195902.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:642656 CHROM_POS_END:644121 } -=| MIDDLE_POINT:643388 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 228 294 1 906 427 XLS3_Contig1422 AT4G24330 expressed protein, hypothetical protein - Caenorhabditis elegans,PID:e1350884 [ 15233789 NP_194164.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12603858 CHROM_POS_END:12606239 } -=| MIDDLE_POINT:12605048 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.59 49 132 265 1 928 478 XLS3_Contig1423 AT3G16480 mitochondrial processing peptidase alpha subunit, putative, similar to mitochondrial processing peptidase alpha subunit, mitochondrial precursor, Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II) (Potato) SWISS-PROT:P29677 [ 18401141 NP_566548.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5599912 CHROM_POS_END:5602722 } -=| MIDDLE_POINT:5601317 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 227 350 1 1243 499 XLS3_Contig1424 AT4G21150 ribophorin II (RPN2) family protein, contains Pfam domain PF05817: Ribophorin II (RPN2) [ 22328844 NP_193847.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11278656 CHROM_POS_END:11283609 } -=| MIDDLE_POINT:11281132 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.79 58 157 270 1 920 691 XLS3_Contig1425 AT5G64920 COP1-interacting protein (CIP8) / zinc finger (C3HC4-type RING finger) family protein, identical to COP1-interacting protein CIP8 (Arabidopsis thaliana) gi|5929906|gb|AAD56636 [ 15238295 NP_201297.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:25961564 CHROM_POS_END:25962568 } -=| MIDDLE_POINT:25962066 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.51 44 130 294 1 901 334 XLS3_Contig1426 AT2G31300 transducin family protein / WD-40 repeat family protein, contains 6 WD-40 repeats (PF00400) [ 15224651 NP_180688.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13353390 CHROM_POS_END:13356864 } -=| MIDDLE_POINT:13355127 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 207 260 1 900 378 XLS3_Contig1427 AT1G62430 phosphatidate cytidylyltransferase / CDP-diglyceride synthetase (CDS1), identical to SP|O04928 Phosphatidate cytidylyltransferase (EC 2.7.7.41) (CDP-diglyceride synthetase) (CDP-diglyceride pyrophosphorylase) (CDP-diacylglycerol synthase) (CDS) (CTP:phosphatidate cytidylyltransferase) (CDP-DAG synthase) (CDP-DG synthetase) {Arabidopsis thaliana} [ 30696710 NP_176433.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:23109939 CHROM_POS_END:23112588 } -=| MIDDLE_POINT:23111263 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 322 420 1 1593 421 XLS3_Contig1428 AT4G17730 syntaxin 23 (SYP23) / PEP12-like protein, identical to SP|O04378 Syntaxin 23 (AtSYP23) (AtPLP) (AtPEP12-like protein) {Arabidopsis thaliana} [ 18414953 NP_567537.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9865364 CHROM_POS_END:9866648 } -=| MIDDLE_POINT:9866006 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.79 75 154 203 1 907 255 XLS3_Contig1429 no_hits_found 0 0 XLS3_Contig1430 AT1G69500 cytochrome P450 family protein, similar to Cytochrome P450 86A2 (SP:O23066) (Arabidopsis thaliana)contains Pfam profile: PF00067: Cytochrome P450 [ 30697865 NP_177109.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:26127761 CHROM_POS_END:26129572 } -=| MIDDLE_POINT:26128666 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 188 234 1 847 478 XLS3_Contig1431 AT5G26770 expressed protein [ AT5G26770 42573487 NP_974840.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9407984 CHROM_POS_END:9409738 } -=| MIDDLE_POINT:9408861 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.81 61 151 246 1 947 335 XLS3_Contig1432 AT4G20840 FAD-binding domain-containing protein, similar to SP|P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) (Eschscholzia californica) [ 15233416 NP_193816.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11157927 CHROM_POS_END:11159546 } -=| MIDDLE_POINT:11158736 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 56 181 318 1 1041 539 XLS3_Contig1433 AT4G28260 expressed protein [ AT4G28260 15235240 NP_194555.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:14005054 CHROM_POS_END:14006768 } -=| MIDDLE_POINT:14005911 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.33 40 72 180 1 1179 516 XLS3_Contig1434 AT2G37790 aldo/keto reductase family protein, similar to chalcone reductase (Sesbania rostrata)(GI:2792155), and aldose reductase ALDRXV4 (Xerophyta viscosa)(GI:4539944), (Hordeum vulgare)(GI:728592) [ 30687261 NP_181315.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15845916 CHROM_POS_END:15847830 } -=| MIDDLE_POINT:15846873 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.67 41 130 310 1 1356 314 XLS3_Contig1435 AT3G54940 cysteine proteinase, putative, contains similarity to cysteine proteinase GI:479060 from (Glycine max) [ 42572679 NP_974435.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:20365380 CHROM_POS_END:20367104 } -=| MIDDLE_POINT:20366242 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.95 63 169 267 1 939 368 XLS3_Contig1436 AT3G09010 protein kinase family protein, contains protein kinase domain, Pfam:PF00069 [ 18398327 NP_566341.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2750290 CHROM_POS_END:2752091 } -=| MIDDLE_POINT:2751190 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.88 64 154 238 1 935 393 XLS3_Contig1437 AT4G35160 O-methyltransferase family 2 protein, similar to caffeic acid O-methyltransferase, Pinus taeda, gb:U39301 [ 15236282 NP_195242.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16730994 CHROM_POS_END:16732813 } -=| MIDDLE_POINT:16731903 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.63 49 130 265 1 836 382 XLS3_Contig1438 AT1G54870 similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:At3g05260.1) [ 79366418 NP_564670.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20462678 CHROM_POS_END:20464084 } -=| MIDDLE_POINT:20463381 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.69 62 125 199 1 875 335 XLS3_Contig1439 no_hits_found 0 0 XLS3_Contig1440 AT5G60020 laccase, putative / diphenol oxidase, putative, similar to laccase LAC2-4, Liriodendron tulipifera, EMBL:LTU73106 (GI:1621467) [ 15238592 NP_200810.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:24185298 CHROM_POS_END:24187449 } -=| MIDDLE_POINT:24186373 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 230 297 1 951 577 XLS3_Contig1441 AT3G48860 expressed protein [ AT3G48860 22331704 NP_190455.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:18128604 CHROM_POS_END:18132838 } -=| MIDDLE_POINT:18130721 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.56 53 128 240 1 810 577 XLS3_Contig1442 AT1G13260 DNA-binding protein RAV1 (RAV1), identical to SP|Q9ZWM9 DNA-binding protein RAV1 {Arabidopsis thaliana}, RAV1 GI:3868857 from (Arabidopsis thaliana) [ 15222217 NP_172784.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4542383 CHROM_POS_END:4543417 } -=| MIDDLE_POINT:4542900 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.96 66 186 280 1 1002 344 XLS3_Contig1443 AT5G55530 C2 domain-containing protein, low similarity to cold-regulated gene SRC2 (Glycine max) GI:2055230 [ 30696612 NP_200364.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:22511665 CHROM_POS_END:22512882 } -=| MIDDLE_POINT:22512273 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.71 53 142 265 1 877 405 XLS3_Contig1444 AT2G01710 DNAJ heat shock N-terminal domain-containing protein, simlar to AHM1 (Triticum aestivum) GI:6691467 [ 18379283 NP_565276.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:315835 CHROM_POS_END:316770 } -=| MIDDLE_POINT:316302 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.35 38 83 215 1 1085 311 XLS3_Contig1445 AT2G04540 3-oxoacyl-(acyl-carrier-protein) synthase II, putative, similar to Swiss-Prot:P56902 3-oxoacyl-(acyl-carrier-protein) synthase II (EC 2.3.1.41) (Beta- ketoacyl-ACP synthase II) (KAS II) (Rhizobium meliloti) [ 22325473 NP_178533.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1581518 CHROM_POS_END:1584632 } -=| MIDDLE_POINT:1583075 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 186 257 1 886 461 XLS3_Contig1446 AT1G43170 60S ribosomal protein L3 (RPL3A), identical to ribosomal protein GI:166858 from (Arabidopsis thaliana) [ 15218306 NP_175009.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:16269432 CHROM_POS_END:16271071 } -=| MIDDLE_POINT:16270251 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 88 296 334 1 1076 389 XLS3_Contig1447 AT3G04610 KH domain-containing protein, similar putative nucleic acid binding protein GB:CAB39665 (Arabidopsis thaliana) [ 15229321 NP_187112.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1250768 CHROM_POS_END:1254278 } -=| MIDDLE_POINT:1252523 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 51 223 437 1 1316 577 XLS3_Contig1448 AT2G26510 xanthine/uracil permease family protein, contains Pfam profile: PF00860 permease family [ 15225319 NP_180219.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11281196 CHROM_POS_END:11284542 } -=| MIDDLE_POINT:11282869 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 181 280 1 944 551 XLS3_Contig1449 AT5G40010 AAA-type ATPase family protein, contains Pfam profile: ATPase family PF00004 [ 15242536 NP_198817.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16037446 CHROM_POS_END:16038990 } -=| MIDDLE_POINT:16038218 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 61 255 413 1 1410 514 XLS3_Contig1450 AT3G02830 zinc finger (CCCH-type) family protein, contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) [ 18396338 NP_566183.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:614082 CHROM_POS_END:615923 } -=| MIDDLE_POINT:615002 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.93 66 160 240 1 899 397 XLS3_Contig1451 AT3G09350 armadillo/beta-catenin repeat family protein, contains Pfam profile: PF00514 armadillo/beta-catenin-like repeat [ 18398480 NP_566349.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2871222 CHROM_POS_END:2873115 } -=| MIDDLE_POINT:2872168 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 206 290 1 1078 363 XLS3_Contig1452 AT3G60190 dynamin-like protein E (DL1E), nearly identical to dynamin-like protein E (Arabidopsis thaliana) GI:19423872 [ 18411520 NP_567094.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:22255342 CHROM_POS_END:22258626 } -=| MIDDLE_POINT:22256984 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.94 83 173 206 1 834 624 XLS3_Contig1453 AT5G44120 12S seed storage protein (CRA1), nearly identical to SP|P15455 (Plant Mol Biol 11:805-820 (1988)) [ 15241422 NP_199225.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17773687 CHROM_POS_END:17775473 } -=| MIDDLE_POINT:17774580 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.56 40 114 284 1 841 472 XLS3_Contig1454 AT4G32520 glycine hydroxymethyltransferase, putative / serine hydroxymethyltransferase, putative / serine/threonine aldolase, putative, similar to serine hydroxymethyltransferase (Chlamydomonas reinhardtii) GI:17066746 [ 18418028 NP_567895.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15689648 CHROM_POS_END:15692340 } -=| MIDDLE_POINT:15690994 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.8 68 154 224 1 875 529 XLS3_Contig1455 AT4G03110 RNA-binding protein, putative, similar to Etr-1 (Danio rerio) GI:7670536, BRUNO-like 6 RNA-binding protein (Homo sapiens) GI:15341327, CUG-BP and ETR-3 like factor 3 (Homo sapiens) GI:12746392 [ 18412143 NP_567249.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1376612 CHROM_POS_END:1379275 } -=| MIDDLE_POINT:1377943 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 200 312 1 957 441 XLS3_Contig1456 AT5G17990 anthranilate phosphoribosyltransferase, identical to anthranilate phosphoribosyltransferase, chloroplast precursor (EC 2.4.2.18) SP:Q02166 from (Arabidopsis thaliana) [ 15238711 NP_197300.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5957332 CHROM_POS_END:5959683 } -=| MIDDLE_POINT:5958507 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 178 252 1 1059 444 XLS3_Contig1457 AT1G43770 PHD finger family protein, contains Pfam domain, PF00628: PHD-finger [ 30693717 NP_175045.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16550949 CHROM_POS_END:16552347 } -=| MIDDLE_POINT:16551648 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.15 26 76 291 1 893 371 XLS3_Contig1458 AT3G09630 60S ribosomal protein L4/L1 (RPL4A), strong similarity to 60S ribosomal protein L1 GB:P49691 [ 15232723 NP_187574.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2953818 CHROM_POS_END:2955449 } -=| MIDDLE_POINT:2954633 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 227 274 1 872 406 XLS3_Contig1459 AT4G09670 oxidoreductase family protein, similar to AX110P (Daucus carota) GI:285739 [ 15233990 NP_192705.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6107379 CHROM_POS_END:6109046 } -=| MIDDLE_POINT:6108212 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 169 242 1 945 362 XLS3_Contig1460 AT5G48230 acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative, strong similarity to Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) (Raphanus sativus) GI:1542941 [ 30695411 NP_568694.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:19569796 CHROM_POS_END:19572348 } -=| MIDDLE_POINT:19571072 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 225 280 1 1100 403 XLS3_Contig1461 AT5G19990 26S proteasome AAA-ATPase subunit (RPT6a) [ AT5G19990 18420092 NP_568389.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6752146 CHROM_POS_END:6754920 } -=| MIDDLE_POINT:6753533 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 92 213 231 1 838 419 XLS3_Contig1462 AT5G66880 serine/threonine protein kinase, putative, similar to serine-threonine protein kinase (Triticum aestivum) gi|2055374|gb|AAB58348 [ 15240124 NP_201489.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:26727923 CHROM_POS_END:26729958 } -=| MIDDLE_POINT:26728940 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 89 206 231 1 974 361 XLS3_Contig1463 AT3G25150 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein, contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [ 30687772 NP_189151.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9157168 CHROM_POS_END:9159369 } -=| MIDDLE_POINT:9158268 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.51 40 121 299 1 1086 488 XLS3_Contig1464 AT3G52280 DNA-binding bromodomain-containing protein, contains bromodomain, INTERPRO:IPR001487 [ 15231174 NP_190796.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19400081 CHROM_POS_END:19402267 } -=| MIDDLE_POINT:19401174 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.7 61 133 216 1 903 369 XLS3_Contig1465 AT1G34540 cytochrome P450 family protein, similar to Cytochrome P450 94A1 (P450-dependent fatty acid omega-hydroxylase) (SP:O81117) {Vicia sativa} [ 15218671 NP_174713.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12637032 CHROM_POS_END:12638528 } -=| MIDDLE_POINT:12637780 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.55 41 116 282 1 921 498 XLS3_Contig1466 AT2G22840 expressed protein, identical to transcription activator GRL1 (Arabidopsis thaliana) GI:21539880 (unpublished) [ 15227758 NP_179869.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9735921 CHROM_POS_END:9738221 } -=| MIDDLE_POINT:9737071 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.46 55 98 178 1 901 530 XLS3_Contig1467 AT5G04660 cytochrome P450, putative, cytochrome P450 77A3p, Glycine max., PIR:T05948 [ 15238249 NP_196086.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1336050 CHROM_POS_END:1337588 } -=| MIDDLE_POINT:1336819 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 288 413 1 1646 512 XLS3_Contig1468 AT1G54990 expressed protein [ AT1G54990 30695863 NP_564672.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20515232 CHROM_POS_END:20517156 } -=| MIDDLE_POINT:20516194 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.64 50 130 260 1 940 473 XLS3_Contig1469 AT2G01110 thylakoid membrane formation protein / cpTatC (APG2), identical to thylakoid membrane formation protein (cpTatC) GI:15004994 from (Arabidopsis thaliana) [ 18379153 NP_565252.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:83786 CHROM_POS_END:85088 } -=| MIDDLE_POINT:84437 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.96 79 174 219 1 977 340 XLS3_Contig1470 AT3G55140 pectate lyase family protein, similar to pollen allergen Amb a 1.3 SP:P27761 from (Ambrosia artemisiifolia) [ 30694193 NP_191074.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:20449796 CHROM_POS_END:20451202 } -=| MIDDLE_POINT:20450499 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 188 274 1 893 331 XLS3_Contig1471 AT3G06150 expressed protein [ AT3G06150 15230646 NP_187266.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1861977 CHROM_POS_END:1863761 } -=| MIDDLE_POINT:1862869 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.27 32 64 199 1 874 594 XLS3_Contig1472 no_hits_found 0 0 XLS3_Contig1473 AT1G56110 nucleolar protein Nop56, putative, similar to XNop56 protein (Xenopus laevis) GI:14799394 [ 15223458 NP_176007.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20988209 CHROM_POS_END:20990558 } -=| MIDDLE_POINT:20989383 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 233 287 1 969 522 XLS3_Contig1474 AT1G64720 expressed protein, weak similarity to SP|P53809 Phosphatidylcholine transfer protein (PC-TP) {Rattus norvegicus} [ 15217736 NP_176653.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:24050550 CHROM_POS_END:24052200 } -=| MIDDLE_POINT:24051375 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 61 251 411 1 1560 385 XLS3_Contig1475 AT2G38800 calmodulin-binding protein-related, contains similarity to potato calmodulin-binding protein PCBP GI:17933110 from (Solanum tuberosum) [ 15224955 NP_181414.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16224077 CHROM_POS_END:16225915 } -=| MIDDLE_POINT:16224996 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.28 30 111 360 1 1370 612 XLS3_Contig1476 AT1G78680 gamma-glutamyl hydrolase (GGH1) / gamma-Glu-X carboxypeptidase / conjugase, identical to SP|O65355 Gamma-glutamyl hydrolase precursor (EC 3.4.19.9) (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH) {Arabidopsis thaliana} [ 30699349 NP_565186.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:29598826 CHROM_POS_END:29600930 } -=| MIDDLE_POINT:29599878 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.84 64 148 230 1 976 347 XLS3_Contig1477 AT5G02100 oxysterol-binding family protein, similar to SWH1 (Saccharomyces cerevisiae) GI:402658 [ 15241681 NP_195830.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:413636 CHROM_POS_END:416013 } -=| MIDDLE_POINT:414824 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 219 272 1 1069 453 XLS3_Contig1478 AT1G07840 leucine zipper factor-related, similar to charged amino acid rich leucine zipper factor-1 (GI:12061569) {Mus musculus} [ 42571389 NP_973785.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2424600 CHROM_POS_END:2426422 } -=| MIDDLE_POINT:2425511 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.63 54 122 224 1 858 312 XLS3_Contig1479 AT5G55260 serine/threonine protein phosphatase PP-X isozyme 2 (PPX2), identical to SP|P48528 Serine/threonine protein phosphatase PP-X isozyme 2 (EC 3.1.3.16) {Arabidopsis thaliana} [ 15240488 NP_200337.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22434034 CHROM_POS_END:22435847 } -=| MIDDLE_POINT:22434940 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 96 216 224 1 900 305 XLS3_Contig1480 AT5G65010 asparagine synthetase 2 (ASN2), identical to asparagine synthetase (ASN2) (Arabidopsis thaliana) GI:3859536 [ 30698088 NP_201306.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:25986450 CHROM_POS_END:25989504 } -=| MIDDLE_POINT:25987977 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 227 267 1 946 579 XLS3_Contig1481 AT2G27200 GTP-binding family protein, contains Pfam domain, PF01926: GTPase of unknown function [ 15225856 NP_180288.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11632527 CHROM_POS_END:11635037 } -=| MIDDLE_POINT:11633782 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 201 313 1 1054 537 XLS3_Contig1482 AT4G27430 COP1-interacting protein 7 (CIP7), identical to COP1-Interacting Protein 7 (CIP7) GI:3327868 from (Arabidopsis thaliana) [ 15234126 NP_194473.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:13718823 CHROM_POS_END:13722742 } -=| MIDDLE_POINT:13720782 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.84 54 161 293 1 1055 1058 XLS3_Contig1483 AT5G59790 expressed protein [ AT5G59790 15238524 NP_200787.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:24108176 CHROM_POS_END:24110030 } -=| MIDDLE_POINT:24109103 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.79 59 168 284 1 874 423 XLS3_Contig1484 AT2G16430 purple acid phosphatase (PAP10), identical to purple acid phosphatase (PAP10) GI:20257482 from (Arabidopsis thaliana) [ 15227205 NP_179235.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7127584 CHROM_POS_END:7129854 } -=| MIDDLE_POINT:7128719 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 184 269 1 942 468 XLS3_Contig1485 AT4G24220 expressed protein, protein induced upon wounding - Arabidopsis thaliana, PID:e257749 [ 15233747 NP_194153.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12565229 CHROM_POS_END:12566484 } -=| MIDDLE_POINT:12565856 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 197 267 1 919 388 XLS3_Contig1486 AT5G47435 formyltetrahydrofolate deformylase, putative, similar to formyltetrahydrofolate deformylase (strain PCC 6803- Synechocystis sp.) SWISS-PROT:Q55135 [ 18422794 NP_568682.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:19259006 CHROM_POS_END:19260651 } -=| MIDDLE_POINT:19259828 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.91 68 154 224 1 970 323 XLS3_Contig1487 AT3G29185 expressed protein [ AT3G29185 30689522 NP_850647.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:11156329 CHROM_POS_END:11158444 } -=| MIDDLE_POINT:11157386 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.87 57 161 281 1 1002 411 XLS3_Contig1488 AT1G68070 zinc finger (C3HC4-type RING finger) family protein, very low similarity to RING-H2 finger protein RHG1a (Arabidopsis thaliana) GI:3822225 [ 15220639 NP_176974.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:25519075 CHROM_POS_END:25520430 } -=| MIDDLE_POINT:25519752 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 62 178 283 1 956 343 XLS3_Contig1489 AT1G71350 eukaryotic translation initiation factor SUI1 family protein, weak similarity to SP|P41214 Ligatin (Hepatocellular carcinoma-associated antigen 56) {Homo sapiens} [ 42563136 NP_177291.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26892187 CHROM_POS_END:26894871 } -=| MIDDLE_POINT:26893529 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.84 56 157 276 1 909 597 XLS3_Contig1490 AT5G44640 glycosyl hydrolase family 1 protein, contains Pfam PF00232 : Glycosyl hydrolase family 1 domain [ 15241543 NP_199277.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18028373 CHROM_POS_END:18029896 } -=| MIDDLE_POINT:18029134 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.83 47 133 278 1 1122 507 XLS3_Contig1491 AT1G72280 endoplasmic reticulum oxidoreductin 1 (ERO1) family protein, contains Pfam domain, PF04137: Endoplasmic Reticulum Oxidoreductin 1 (ERO1) [ 15218421 NP_177372.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:27215701 CHROM_POS_END:27218168 } -=| MIDDLE_POINT:27216934 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.96 64 162 250 1 1036 469 XLS3_Contig1492 AT5G24630 expressed protein, [ AT5G24630 15238594 NP_197851.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8432526 CHROM_POS_END:8436173 } -=| MIDDLE_POINT:8434349 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.4 38 124 320 1 955 531 XLS3_Contig1493 AT1G45201 similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:At5g67050.1) [ 79588733 NP_849772.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17126329 CHROM_POS_END:17130902 } -=| MIDDLE_POINT:17128615 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 48 213 442 1 1397 479 XLS3_Contig1494 AT5G63200 tetratricopeptide repeat (TPR)-containing protein, low similarity to SP|P28290 Sperm-specific antigen 2 (Cleavage signal-1 protein) (CS-1) Homo sapiens [ 30697806 NP_201125.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:25366269 CHROM_POS_END:25370125 } -=| MIDDLE_POINT:25368197 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.78 60 158 263 1 901 649 XLS3_Contig1495 no_hits_found 0 0 XLS3_Contig1496 AT3G04710 ankyrin repeat family protein, contains Pfam profile: PF00023 ankyrin repeat [ 15229331 NP_187122.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1278235 CHROM_POS_END:1280948 } -=| MIDDLE_POINT:1279591 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 305 460 1 1653 456 XLS3_Contig1497 no_hits_found 0 0 XLS3_Contig1498 AT2G28380 double-stranded RNA-binding domain (DsRBD)-containing protein, contains Pfam profile PF00035: Double-stranded RNA binding motif [ 18401724 NP_565672.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12141175 CHROM_POS_END:12142992 } -=| MIDDLE_POINT:12142083 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.98 74 185 250 1 956 434 XLS3_Contig1499 AT1G14430 glyoxal oxidase-related, low similarity to glyoxal oxidase precursor (glx1) (Phanerochaete chrysosporium) GI:1050302 [ 15223754 NP_172895.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4934354 CHROM_POS_END:4937016 } -=| MIDDLE_POINT:4935685 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.63 47 124 263 1 915 849 XLS3_Contig1500 AT2G26770 plectin-related, contains weak similarity to Swiss-Prot:Q9JI55 plectin 1 (PLTN, PCN, 300-kDa intermediate filament-associated protein, IFAP300)(Cricetulus griseus) [ 15225786 NP_180245.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:11411335 CHROM_POS_END:11414821 } -=| MIDDLE_POINT:11413078 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 201 258 1 877 496 XLS3_Contig1501 AT4G00720 shaggy-related protein kinase theta / ASK-theta (ASK8), identical to shaggy-related protein kinase theta (ASK-theta) (Arabidopsis thaliana) SWISS-PROT:Q96287 [ 15236918 NP_191981.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:294116 CHROM_POS_END:297002 } -=| MIDDLE_POINT:295559 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 225 291 1 1600 472 XLS3_Contig1502 AT3G58800 expressed protein, proline-rich protein A41R, Chlorella virus PBCV-1, PIR:T17531 [ 15231138 NP_191439.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21759539 CHROM_POS_END:21760573 } -=| MIDDLE_POINT:21760056 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.61 64 114 177 1 956 344 XLS3_Contig1503 AT2G13560 malate oxidoreductase, putative, similar to NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor (EC 1.1.1.39) (NAD-ME) (SP:P37221) {Solanum tuberosum} [ 15225438 NP_178980.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5657171 CHROM_POS_END:5662185 } -=| MIDDLE_POINT:5659678 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 84 390 460 1 1560 623 XLS3_Contig1504 AT3G15050 calmodulin-binding family protein, similar to SF16 protein (Helianthus annuus) GI:560150 [ 15232474 NP_188123.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5066886 CHROM_POS_END:5067899 } -=| MIDDLE_POINT:5067392 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.51 45 114 253 1 955 259 XLS3_Contig1505 AT2G44530 ribose-phosphate pyrophosphokinase, putative / phosphoribosyl diphosphate synthetase, putative, very strong similarity to phosphoribosyl pyrophosphate synthase (Spinacia oleracea) GI:4902849 [ 30689743 NP_181981.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18390808 CHROM_POS_END:18393050 } -=| MIDDLE_POINT:18391929 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 186 218 1 949 394 XLS3_Contig1506 AT5G05230 expressed protein [ AT5G05230 42567657 NP_196142.3 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1551594 CHROM_POS_END:1553544 } -=| MIDDLE_POINT:1552569 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.12 31 72 230 1 924 363 XLS3_Contig1507 AT5G42820 U2 snRNP auxiliary factor small subunit, putative, strong similarity to U2 snRNP auxiliary factor, small subunit (Oryza sativa) GI:3850816 [ 42573547 NP_974870.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17187673 CHROM_POS_END:17188524 } -=| MIDDLE_POINT:17188098 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 202 281 1 930 283 XLS3_Contig1508 AT5G14520 pescadillo-related, similar to pescadillo (Zebrafish, Danio rerio) SWISS-PROT:P79741 [ 15241421 NP_196956.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4680792 CHROM_POS_END:4684333 } -=| MIDDLE_POINT:4682562 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 202 272 1 1203 590 XLS3_Contig1509 AT4G37680 expressed protein, contains Pfam domain, PF03006: Uncharacterised protein family (Hly-III / UPF0073) [ 15235657 NP_195483.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17701225 CHROM_POS_END:17702562 } -=| MIDDLE_POINT:17701893 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.97 65 163 250 1 1115 385 XLS3_Contig1510 AT1G06620 2-oxoglutarate-dependent dioxygenase, putative, similar to 2A6 (GI:599622) and tomato ethylene synthesis regulatory protein E8 (SP|P10967) [ 30679748 NP_172147.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2025617 CHROM_POS_END:2027093 } -=| MIDDLE_POINT:2026355 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.47 50 87 173 1 765 365 XLS3_Contig1511 AT2G30920 hexaprenyldihydroxybenzoate methyltransferase, identical to hexaprenyldihydroxybenzoate methyltransferase SP:O49354 from (Arabidopsis thaliana) [ 15224587 NP_180649.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13164486 CHROM_POS_END:13166901 } -=| MIDDLE_POINT:13165693 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.88 66 168 254 1 1048 322 XLS3_Contig1512 AT5G25770 expressed protein [ AT5G25770 42573477 NP_974835.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:8969311 CHROM_POS_END:8971809 } -=| MIDDLE_POINT:8970560 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.86 64 150 234 1 931 418 XLS3_Contig1513 AT1G57720 elongation factor 1B-gamma, putative / eEF-1B gamma, putative, similar to elongation factor 1B gamma GI:3868758 from (Oryza sativa) [ 15223649 NP_176084.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21381538 CHROM_POS_END:21383779 } -=| MIDDLE_POINT:21382658 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.82 64 150 232 1 817 413 XLS3_Contig1514 AT1G75380 wound-responsive protein-related, similar to wound inducive gene GI:8096273 from (Nicotiana tabacum) [ 15222221 NP_177671.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:28285450 CHROM_POS_END:28287292 } -=| MIDDLE_POINT:28286371 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.94 70 176 249 1 950 325 XLS3_Contig1515 AT2G19520 WD-40 repeat protein (MSI4), contains 6 (4 significant) WD-40 repeats (PF0400) [ 30680701 NP_565456.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8463088 CHROM_POS_END:8466317 } -=| MIDDLE_POINT:8464702 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 195 299 1 1324 507 XLS3_Contig1516 AT3G14420 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative, similar to (S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate oxidase, GOX) (Short chain alpha-hydroxy acid oxidase) (Spinacia oleracea) SWISS-PROT:P05414 [ 15231850 NP_188060.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4821811 CHROM_POS_END:4823906 } -=| MIDDLE_POINT:4822858 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 90 255 281 1 1032 367 XLS3_Contig1517 AT5G19050 expressed protein [ AT5G19050 15239639 NP_197406.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6369309 CHROM_POS_END:6371728 } -=| MIDDLE_POINT:6370518 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 235 305 1 1023 361 XLS3_Contig1518 AT3G19130 RNA-binding protein, putative, similar to RNA Binding Protein 47 (Nicotiana plumbaginifolia) GI:9663769, DNA binding protein ACBF GB:AAC49850 from (Nicotiana tabacum) [ 15230291 NP_188544.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6611404 CHROM_POS_END:6613829 } -=| MIDDLE_POINT:6612616 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.99 55 200 360 1 1114 435 XLS3_Contig1519 AT1G44110 cyclin, putative, similar to mitotic cyclin a2-type (Glycine max) GI:857397, cyclin A-like protein (Nicotiana tabacum) GI:1064927 [ 15219350 NP_175077.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16777475 CHROM_POS_END:16779622 } -=| MIDDLE_POINT:16778548 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.43 44 112 249 1 945 460 XLS3_Contig1520 AT3G02570 phosphomannose isomerase type I family protein, contains Pfam profile: PF01238 phosphomannose isomerase type I [ 15232927 NP_186906.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:543470 CHROM_POS_END:545485 } -=| MIDDLE_POINT:544477 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 57 217 380 1 1327 432 XLS3_Contig1521 AT3G18680 aspartate/glutamate/uridylate kinase family protein, similar to UMP-kinase GB:CAB38122 gi:4468612 from (Lactococcus lactis) [ 42572477 NP_974334.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:6427539 CHROM_POS_END:6429603 } -=| MIDDLE_POINT:6428571 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.94 76 186 244 1 868 366 XLS3_Contig1522 AT3G29075 glycine-rich protein [ AT3G29075 15228587 NP_189551.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11052882 CHROM_POS_END:11053866 } -=| MIDDLE_POINT:11053374 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.28 45 73 162 1 850 294 XLS3_Contig1523 AT4G36940 similar to putative nicotinate phosphoribosyltransferase [Oryza sativa (japonica cultivar-group)] (GB:XP_470349.1) [ 79497685 NP_195412.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17416935 CHROM_POS_END:17419880 } -=| MIDDLE_POINT:17418407 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 194 236 1 975 559 XLS3_Contig1524 AT1G79580 no apical meristem (NAM) family protein, similar to OsNAC7 protein (GI:6730944) (Oryza sativa) [ 15219419 NP_178076.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:29945913 CHROM_POS_END:29947818 } -=| MIDDLE_POINT:29946865 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.86 64 161 248 1 895 371 XLS3_Contig1525 AT3G62630 expressed protein [ AT3G62630 15228815 NP_191822.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:23174913 CHROM_POS_END:23176055 } -=| MIDDLE_POINT:23175484 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.47 51 80 156 1 937 380 XLS3_Contig1526 AT2G33040 ATP synthase gamma chain, mitochondrial (ATPC), identical to SP|Q96250 ATP synthase gamma chain, mitochondrial precursor (EC 3.6.3.14) {Arabidopsis thaliana} [ 15227257 NP_180863.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14026055 CHROM_POS_END:14028124 } -=| MIDDLE_POINT:14027089 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 259 322 1 1389 325 XLS3_Contig1527 AT1G32910 transferase family protein, low similarity to anthranilate N-hydroxycinnamoyl/benzoyltransferase Dianthus caryophyllus GI:2239091, benzylalcohol acetyltransferase Clarkia breweri GI:6166336 [ 15223333 NP_174567.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11925406 CHROM_POS_END:11926888 } -=| MIDDLE_POINT:11926147 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.55 54 104 191 1 929 464 XLS3_Contig1528 AT1G61050 alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein, low similarity to alpha-1,4-N-acetylglucosaminyltransferase, Homo sapiens (gi:5726306), Gb3 synthase, Rattus norvegicus (gi:9082162) [ 15219856 NP_176300.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22490401 CHROM_POS_END:22491708 } -=| MIDDLE_POINT:22491054 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.13 29 68 234 1 912 435 XLS3_Contig1529 AT2G43840 UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase [ 42571217 NP_973682.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:18164758 CHROM_POS_END:18166243 } -=| MIDDLE_POINT:18165500 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.69 46 136 290 1 922 449 XLS3_Contig1530 AT5G10770 chloroplast nucleoid DNA-binding protein, putative, similar to CND41, chloroplast nucleoid DNA binding protein (Nicotiana tabacum) GI:2541876 [ 22326716 NP_196638.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3403332 CHROM_POS_END:3405332 } -=| MIDDLE_POINT:3404332 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.88 62 160 258 1 887 474 XLS3_Contig1531 AT4G26000 KH domain-containing protein, single-stranded nucleic acid-binding protein CBP - mouse, PIR2:S78515 [ 15236094 NP_194330.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:13197289 CHROM_POS_END:13199548 } -=| MIDDLE_POINT:13198418 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.79 55 162 291 1 1006 495 XLS3_Contig1532 AT5G09810 actin 7 (ACT7) / actin 2, identical to SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana} [ 15242516 NP_196543.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3052810 CHROM_POS_END:3054221 } -=| MIDDLE_POINT:3053515 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 98 333 337 1 1235 377 XLS3_Contig1533 AT5G53970 aminotransferase, putative, similar to nicotianamine aminotransferase from Hordeum vulgare (GI:6498122, GI:6469087) [ 15239521 NP_200208.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21927902 CHROM_POS_END:21929820 } -=| MIDDLE_POINT:21928861 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.87 67 143 213 1 1034 414 XLS3_Contig1534 AT3G57870 ubiquitin-conjugating enzyme, putative, strong similarity to SP|P50550 Ubiquitin-like protein SUMO-1 conjugating enzyme (EC 6.3.2.19) (SUMO- 1-protein ligase) (Ubiquitin carrier protein) (Ubiquitin-conjugating enzyme UbcE2A) {Xenopus laevis} [ 15230881 NP_191346.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21439808 CHROM_POS_END:21441087 } -=| MIDDLE_POINT:21440447 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.83 85 136 160 1 875 160 XLS3_Contig1535 no_hits_found 0 0 XLS3_Contig1536 AT1G65930 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative, strong similarity to isocitrate dehydrogenase SP|Q40345 from (Medicago sativa) [ 15218869 NP_176768.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:24542751 CHROM_POS_END:24545524 } -=| MIDDLE_POINT:24544137 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 213 262 1 918 410 XLS3_Contig1537 AT5G62020 heat shock factor protein, putative (HSF6) / heat shock transcription factor, putative (HTSF6), identical to heat shock transcription factor 6 (HSF6) SP: Q9SCW4 from (Arabidopsis thaliana) [ 30697614 NP_201008.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:24933438 CHROM_POS_END:24934420 } -=| MIDDLE_POINT:24933929 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.67 56 132 232 1 901 299 XLS3_Contig1538 AT5G51140 pseudouridine synthase family protein, low similarity to SP|P23851 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil hydrolyase) {Escherichia coli} [ 15241389 NP_199927.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20801503 CHROM_POS_END:20804019 } -=| MIDDLE_POINT:20802761 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 243 375 1 1325 395 XLS3_Contig1539 AT1G73880 UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase [ 22330612 NP_177529.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:27788804 CHROM_POS_END:27790225 } -=| MIDDLE_POINT:27789514 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.63 39 126 319 1 926 473 XLS3_Contig1540 AT1G20110 zinc finger (FYVE type) family protein, contains Pfam profile: PF01363 FYVE zinc finger [ 18394823 NP_564103.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6971545 CHROM_POS_END:6974569 } -=| MIDDLE_POINT:6973057 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.4 43 127 290 1 864 601 XLS3_Contig1541 AT5G48840 pantoate-beta-alanine ligase, putative, similar to pantoate--beta-alanine ligase (Lotus japonicus) GI:2292921 [ 15239721 NP_199695.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19821049 CHROM_POS_END:19822267 } -=| MIDDLE_POINT:19821658 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.94 65 172 262 1 1050 310 XLS3_Contig1542 AT5G07030 similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:At3g54400.1) [ 79507883 NP_196320.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2183601 CHROM_POS_END:2185718 } -=| MIDDLE_POINT:2184659 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.96 58 174 298 1 943 455 XLS3_Contig1543 AT5G49130 MATE efflux family protein, contains Pfam profile PF01554: MatE Uncharacterized membrane protein family [ 15239797 NP_199724.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19933130 CHROM_POS_END:19934751 } -=| MIDDLE_POINT:19933940 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 61 272 444 1 1455 502 XLS3_Contig1544 AT3G02290 zinc finger (C3HC4-type RING finger) family protein, contains zinc finger motif, C3HC4 type (RING finger) [ 18396135 NP_566169.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:459392 CHROM_POS_END:460695 } -=| MIDDLE_POINT:460043 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.21 32 63 195 1 1097 231 XLS3_Contig1545 AT3G11240 arginine-tRNA-protein transferase, putative / arginyltransferase, putative / arginyl-tRNA-protein transferase, putative, similar to SP|Q9ZT48 Arginine-tRNA-protein transferase 1 (EC 2.3.2.8) (R-transferase 1) (Arginyltransferase 1) (Arginyl-tRNA--protein transferase 1) {Arabidopsis thaliana} [ 15229703 NP_187733.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3518671 CHROM_POS_END:3521098 } -=| MIDDLE_POINT:3519884 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 56 285 502 1 1615 605 XLS3_Contig1546 AT3G14390 diaminopimelate decarboxylase, putative / DAP carboxylase, putative, similar to diaminopimelate decarboxylase (Arabidopsis thaliana) GI:6562332 [ 15231844 NP_188056.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4806778 CHROM_POS_END:4808961 } -=| MIDDLE_POINT:4807869 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 217 306 1 963 484 XLS3_Contig1547 no_hits_found 0 0 XLS3_Contig1548 AT5G11200 DEAD/DEAH box helicase, putative [ AT5G11200 18416493 NP_568245.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3567390 CHROM_POS_END:3570687 } -=| MIDDLE_POINT:3569038 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 92 299 322 1 1067 427 XLS3_Contig1549 AT4G21410 protein kinase family protein, contains Pfam PF00069: Protein kinase domain [ 22328852 NP_193872.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11402474 CHROM_POS_END:11405036 } -=| MIDDLE_POINT:11403755 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.22 28 80 281 1 907 679 XLS3_Contig1550 AT5G60390 elongation factor 1-alpha / EF-1-alpha, identical to SWISS-PROT:P13905 elongation factor 1-alpha (EF-1-alpha) (Arabidopsis thaliana) [ 15239308 NP_200847.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:24306452 CHROM_POS_END:24307901 } -=| MIDDLE_POINT:24307176 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 97 274 282 1 913 449 XLS3_Contig1551 AT1G43890 Ras-related GTP-binding protein, putative, similar to GTP-binding protein(RAB1Y) GI:1370173 from (Lotus japonicus) [ 15218575 NP_175056.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16649374 CHROM_POS_END:16650835 } -=| MIDDLE_POINT:16650104 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.98 83 175 210 1 960 212 XLS3_Contig1552 AT2G39110 protein kinase, putative, similar to protein kinase (Lophopyrum elongatum) gi|13022177|gb|AAK11674 [ 30687780 NP_850311.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16326848 CHROM_POS_END:16328646 } -=| MIDDLE_POINT:16327747 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.66 48 149 310 1 935 435 XLS3_Contig1553 AT2G45300 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase, nearly identical to SP|P05466 [ 15225450 NP_182055.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18684592 CHROM_POS_END:18686942 } -=| MIDDLE_POINT:18685767 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.94 67 187 277 1 1007 520 XLS3_Contig1554 AT5G04420 kelch repeat-containing protein, low similarity to rngB protein, Dictyostelium discoideum, PIR:S68824 [ 15237715 NP_196062.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1246868 CHROM_POS_END:1249456 } -=| MIDDLE_POINT:1248162 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.89 68 93 135 1 822 514 XLS3_Contig1555 AT4G31500 cytochrome P450 83B1 (CYP83B1), Identical to Cytochrome P450 (SP:O65782 )(Arabidopsis thaliana) [ 15235968 NP_194878.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15273683 CHROM_POS_END:15275277 } -=| MIDDLE_POINT:15274480 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 41 124 298 1 1498 499 XLS3_Contig1556 AT4G35640 serine O-acetyltransferase, putative, similar to serine acetyltransferase, Arabidopsis thaliana, GI:905391 [ 42567425 NP_195289.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16905760 CHROM_POS_END:16907982 } -=| MIDDLE_POINT:16906871 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.91 73 165 223 1 944 355 XLS3_Contig1557 AT5G56680 asparaginyl-tRNA synthetase 1, cytoplasmic / asparagine-tRNA ligase 1 (SYNC1), identical to SP|Q9SW96 [ 15241897 NP_200479.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22953871 CHROM_POS_END:22956067 } -=| MIDDLE_POINT:22954969 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 237 360 1 1091 572 XLS3_Contig1558 AT5G48230 acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative, strong similarity to Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) (Raphanus sativus) GI:1542941 [ 30695411 NP_568694.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:19569796 CHROM_POS_END:19572348 } -=| MIDDLE_POINT:19571072 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 202 253 1 915 403 XLS3_Contig1559 AT4G29720 amine oxidase family protein, similar to polyamine oxidase isoform-2 (Homo sapiens) GI:16554963 [ 15233671 NP_194701.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14553462 CHROM_POS_END:14555063 } -=| MIDDLE_POINT:14554262 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.81 53 165 308 1 1094 533 XLS3_Contig1560 AT5G17530 phosphoglucosamine mutase family protein, low similarity to phosphoglucomutase/phosphomannomutase (Sphingomonas paucimobilis) GI:6103619 [ 18418333 NP_568350.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:5778170 CHROM_POS_END:5781865 } -=| MIDDLE_POINT:5780017 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 205 291 1 1009 581 XLS3_Contig1561 AT4G23160 protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain [ 42567050 NP_194047.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12129496 CHROM_POS_END:12134097 } -=| MIDDLE_POINT:12131796 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.39 39 81 204 1 1073 1262 XLS3_Contig1562 AT3G30390 amino acid transporter family protein, low similarity to neuronal glutamine transporter (Rattus norvegicus) GI:6978016 [ 18406463 NP_566854.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:11979591 CHROM_POS_END:11981306 } -=| MIDDLE_POINT:11980448 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.88 63 156 247 1 957 460 XLS3_Contig1563 AT4G37560 formamidase, putative / formamide amidohydrolase, putative, similar to SP|Q50228 Formamidase (EC 3.5.1.49) (Formamide amidohydrolase) {Methylophilus methylotrophus} [ 18420071 NP_568029.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17646483 CHROM_POS_END:17648451 } -=| MIDDLE_POINT:17647467 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 246 316 1 1170 452 XLS3_Contig1564 AT5G43960 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein, contains Pfam profiles PF02136: Nuclear transport factor 2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [ 15240057 NP_199209.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17706381 CHROM_POS_END:17708880 } -=| MIDDLE_POINT:17707630 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.57 47 126 264 1 1011 450 XLS3_Contig1565 AT4G23430 short-chain dehydrogenase/reductase (SDR) family protein, contains INTERPRO family IPR002198 Short-chain dehydrogenase/reductase (SDR) superfamily [ 30686197 NP_849428.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:12229181 CHROM_POS_END:12231503 } -=| MIDDLE_POINT:12230342 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.88 69 161 232 1 978 322 XLS3_Contig1566 AT4G22070 WRKY family transcription factor, identical to WRKY transcription factor 31 (WRKY31) GI:15990589 from (Arabidopsis thaliana) [ 18415833 NP_567644.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11691393 CHROM_POS_END:11694246 } -=| MIDDLE_POINT:11692819 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.2 31 72 231 1 765 538 XLS3_Contig1567 AT2G16790 shikimate kinase family protein, similar to thermosensitive glucokinase from Escherichia coli (SP|P39208) (SP|P46859) [ 18398214 NP_565393.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7291175 CHROM_POS_END:7291983 } -=| MIDDLE_POINT:7291579 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.45 50 90 177 1 1216 189 XLS3_Contig1568 AT1G25280 F-box family protein / tubby family protein, similar to Tubby protein homolog (SP:O88808) (Rattus norvegicus) [ 15222543 NP_173899.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:8864948 CHROM_POS_END:8866595 } -=| MIDDLE_POINT:8865771 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.78 74 144 193 1 806 445 XLS3_Contig1569 AT1G76140 similar to prolyl oligopeptidase, putative / prolyl endopeptidase, putative / post-proline cleaving enzyme, putative [Arabidopsis thaliana] (TAIR:At1g20380.1) [ 79382269 NP_177741.3 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:28576081 CHROM_POS_END:28579746 } -=| MIDDLE_POINT:28577913 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 214 317 1 962 795 XLS3_Contig1570 AT4G35230 protein kinase family protein, contains protein kinase domain, Pfam:PF00069 [ 18418600 NP_567980.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16755330 CHROM_POS_END:16758046 } -=| MIDDLE_POINT:16756688 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 193 239 1 1040 512 XLS3_Contig1571 AT3G22190 calmodulin-binding family protein, contains Pfam profile PF00612: IQ calmodulin-binding motif [ 15233296 NP_188858.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7831668 CHROM_POS_END:7833519 } -=| MIDDLE_POINT:7832593 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.6 60 125 206 1 881 400 XLS3_Contig1572 AT3G17000 ubiquitin-conjugating enzyme, putative, similar to Non-Canonical UBiquitin Conjugating Enzyme 1 (NCUBE1) from (Gallus gallus) GI:7362937, (Mus musculus) GI:7363050, (Homo sapiens) GI:7362973 [ 18401338 NP_566563.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5797302 CHROM_POS_END:5799473 } -=| MIDDLE_POINT:5798387 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 62 190 304 1 1116 309 XLS3_Contig1573 AT4G24620 glucose-6-phosphate isomerase, putative, similar to glucose-6-phosphate isomerase (Spinacia oleracea) GI:3413511 [ 30686602 NP_194193.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12708982 CHROM_POS_END:12712620 } -=| MIDDLE_POINT:12710801 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.83 63 168 264 1 902 613 XLS3_Contig1574 AT2G46550 expressed protein [ AT2G46550 18407105 NP_566080.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19119336 CHROM_POS_END:19120529 } -=| MIDDLE_POINT:19119932 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.23 35 80 226 1 1258 397 XLS3_Contig1575 AT5G55700 similar to beta-amylase (CT-BMY) / 1,4-alpha-D-glucan maltohydrolase [Arabidopsis thaliana] (TAIR:At4g17090.1) [ 79537398 NP_568829.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22569099 CHROM_POS_END:22571928 } -=| MIDDLE_POINT:22570513 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.82 65 150 230 1 807 531 XLS3_Contig1576 no_hits_found 0 0 XLS3_Contig1577 AT3G55000 tonneau family protein, similar to tonneau 1b (GI:11494367) (Arabidopsis thaliana) [ 18410175 NP_567012.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20392589 CHROM_POS_END:20394554 } -=| MIDDLE_POINT:20393571 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.95 71 177 249 1 963 260 XLS3_Contig1578 AT3G29360 UDP-glucose 6-dehydrogenase, putative, very strong similarity to SP|Q96558 UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH) {Glycine max} [ 15228687 NP_189582.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:11268612 CHROM_POS_END:11270054 } -=| MIDDLE_POINT:11269333 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 92 267 290 1 938 480 XLS3_Contig1579 AT1G09850 cysteine protease, papain-like (XBCP3), identical to papain-like cysteine peptidase XBCP3 GI:14600257 from (Arabidopsis thaliana) [ 18391078 NP_563855.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3201850 CHROM_POS_END:3203877 } -=| MIDDLE_POINT:3202863 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 277 423 1 1603 437 XLS3_Contig1580 AT1G66520 formyltransferase, putative, similar to methionyl-tRNA formyltransferase (strain N315- Staphylococcus aureus) SWISS-PROT:Q99UQ2 [ 15219681 NP_176825.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:24819993 CHROM_POS_END:24822356 } -=| MIDDLE_POINT:24821174 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.68 77 117 151 1 877 355 XLS3_Contig1581 AT4G05120 equilibrative nucleoside transporter, putative (ENT3), identical to putative equilibrative nucleoside transporter ENT3 (Arabidopsis thaliana) GI:16518993 [ 15234601 NP_192421.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2632884 CHROM_POS_END:2634822 } -=| MIDDLE_POINT:2633853 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 176 270 1 954 418 XLS3_Contig1582 AT1G10020 expressed protein [ AT1G10020 15218372 NP_172473.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3269941 CHROM_POS_END:3271734 } -=| MIDDLE_POINT:3270837 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.67 46 142 304 1 946 461 XLS3_Contig1583 AT3G52120 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein, contains Pfam profiles PF01585: G-patch domain, PF01805: Surp module [ 18409491 NP_566957.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19340221 CHROM_POS_END:19342716 } -=| MIDDLE_POINT:19341468 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 61 274 443 1 1392 443 XLS3_Contig1584 no_hits_found 0 0 XLS3_Contig1585 AT5G44670 expressed protein, contains Pfam:PF01697 Domain of unknown function [ 15241546 NP_199280.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18036436 CHROM_POS_END:18038493 } -=| MIDDLE_POINT:18037464 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.73 51 151 293 1 905 519 XLS3_Contig1586 AT1G20640 RWP-RK domain-containing protein, similar to nodule inception protein GI:6448579 from (Lotus japonicus) [ 15217991 NP_173488.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7155191 CHROM_POS_END:7157976 } -=| MIDDLE_POINT:7156583 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.58 42 127 301 1 826 844 XLS3_Contig1587 AT4G20930 3-hydroxyisobutyrate dehydrogenase, putative, similar to SP|P29266 3-hydroxyisobutyrate dehydrogenase, mitochondrial precursor (EC 1.1.1.31) {Rattus norvegicus} [ 18415593 NP_567617.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11198638 CHROM_POS_END:11201047 } -=| MIDDLE_POINT:11199842 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.85 65 166 255 1 868 347 XLS3_Contig1588 AT5G46840 RNA recognition motif (RRM)-containing protein, contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) [ 15237960 NP_199496.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19022878 CHROM_POS_END:19024836 } -=| MIDDLE_POINT:19023857 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.61 45 137 301 1 963 501 XLS3_Contig1589 AT5G53860 expressed protein [ AT5G53860 22327807 NP_568801.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21882579 CHROM_POS_END:21885802 } -=| MIDDLE_POINT:21884190 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 203 301 1 1025 422 XLS3_Contig1590 AT5G05010 clathrin adaptor complexes medium subunit-related, contains pfam profile: PF00928 adaptor complexes medium subunit family [ 18414767 NP_568147.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1477138 CHROM_POS_END:1479873 } -=| MIDDLE_POINT:1478505 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.97 73 186 253 1 904 527 XLS3_Contig1591 AT2G34560 katanin, putative, similar to katanin p60 subunit (Strongylocentrotus purpuratus) GI:3098603 [ 42571053 NP_973600.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:14567345 CHROM_POS_END:14569774 } -=| MIDDLE_POINT:14568559 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 201 277 1 906 393 XLS3_Contig1592 AT5G42220 ubiquitin family protein, contains INTERPRO:IPR000626 ubiquitin domain [ 30694012 NP_199037.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16890190 CHROM_POS_END:16894683 } -=| MIDDLE_POINT:16892436 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.6 36 95 261 1 1557 879 XLS3_Contig1593 AT1G28600 lipase, putative, similar to lipase (Arabidopsis thaliana) GI:1145627 [ 15218731 NP_174182.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:10051214 CHROM_POS_END:10053059 } -=| MIDDLE_POINT:10052136 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.7 57 119 208 1 956 393 XLS3_Contig1594 AT4G16144 expressed protein [ AT4G16144 30683538 NP_680708.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9138647 CHROM_POS_END:9141437 } -=| MIDDLE_POINT:9140042 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.52 44 120 270 1 942 390 XLS3_Contig1595 AT2G14835 zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) [ 18397649 NP_565365.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:6374320 CHROM_POS_END:6377692 } -=| MIDDLE_POINT:6376006 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.74 61 138 224 1 1025 343 XLS3_Contig1596 AT5G09740 histone acetyltransferase, putative, similar to histone acetyltransferase (Homo sapiens) gi|8317213|gb|AAF72665 [ 15242493 NP_196536.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3022142 CHROM_POS_END:3024712 } -=| MIDDLE_POINT:3023427 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 89 259 291 1 920 445 XLS3_Contig1597 AT4G08900 arginase, identical to Swiss-Prot:P46637 arginase (EC 3.5.3.1) (Arabidopsis thaliana) [ 15236640 NP_192629.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5703496 CHROM_POS_END:5705177 } -=| MIDDLE_POINT:5704336 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 87 202 231 1 924 342 XLS3_Contig1598 AT5G27730 expressed protein [ AT5G27730 18421151 NP_568500.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9820315 CHROM_POS_END:9822872 } -=| MIDDLE_POINT:9821593 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.93 63 162 257 1 899 472 XLS3_Contig1599 AT1G34370 zinc finger (C2H2 type) family protein, contains Pfam domain, PF00096: Zinc finger, C2H2 type [ 30693052 NP_849746.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:12550980 CHROM_POS_END:12552479 } -=| MIDDLE_POINT:12551729 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.57 39 96 244 1 973 499 XLS3_Contig1600 AT3G13510 expressed protein, Pfam profile PF03080: Arabidopsis proteins of unknown function [ 18400044 NP_566457.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4403783 CHROM_POS_END:4405748 } -=| MIDDLE_POINT:4404765 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 217 277 1 1135 419 XLS3_Contig1601 AT5G27470 seryl-tRNA synthetase / serine--tRNA ligase, identical to SP|Q39230 Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS) {Arabidopsis thaliana} [ 15240939 NP_198099.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9695090 CHROM_POS_END:9697157 } -=| MIDDLE_POINT:9696123 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 259 309 1 1490 451 XLS3_Contig1602 AT1G18480 calcineurin-like phosphoesterase family protein, contains Pfam profile: PF00149 calcineurin-like phosphoesterase [ 18394613 NP_564053.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6361632 CHROM_POS_END:6362807 } -=| MIDDLE_POINT:6362219 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 186 283 1 877 391 XLS3_Contig1603 AT3G56720 expressed protein [ AT3G56720 30694502 NP_191231.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21022333 CHROM_POS_END:21024243 } -=| MIDDLE_POINT:21023288 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.63 40 171 422 1 1553 386 XLS3_Contig1604 AT2G16740 ubiquitin-conjugating enzyme, putative, strong similarity to SP|P35133 Ubiquitin-conjugating enzyme E2-17 kDa 10 (EC 6.3.2.19) (Ubiquitin- protein ligase 10) (Ubiquitin carrier protein 10) {Arabidopsis thaliana} [ 18398199 NP_565391.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7274962 CHROM_POS_END:7275819 } -=| MIDDLE_POINT:7275390 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.78 88 131 148 1 675 148 XLS3_Contig1605 AT3G09830 protein kinase, putative, similar to protein kinase (Lophopyrum elongatum) gi|13022177|gb|AAK11674 [ 15232764 NP_187594.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:3017204 CHROM_POS_END:3018701 } -=| MIDDLE_POINT:3017952 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.91 64 176 274 1 950 418 XLS3_Contig1606 AT1G12640 membrane bound O-acyl transferase (MBOAT) family protein, low similarity to porcupine from (Xenopus laevis) GI:6714514, GI:6714520, GI:6714518, GI:6714516 [ 22329514 NP_172724.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4303584 CHROM_POS_END:4305664 } -=| MIDDLE_POINT:4304624 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 205 279 1 928 462 XLS3_Contig1607 AT4G33910 oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to prolyl 4-hydroxylase, alpha subunit, from Gallus gallus (GI:212530), Rattus norvegicus (GI:474940), Drosophila melanogaster (GI:4336512) [ 18418321 NP_567941.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16256948 CHROM_POS_END:16258619 } -=| MIDDLE_POINT:16257783 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 181 271 1 1057 288 XLS3_Contig1608 AT1G04850 ubiquitin-associated (UBA)/TS-N domain-containing protein, weak similarity to SP|P45974 Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15) {Homo sapiens} [ 18390444 NP_563718.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1365310 CHROM_POS_END:1368705 } -=| MIDDLE_POINT:1367007 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 198 256 1 885 413 XLS3_Contig1609 AT4G16650 expressed protein, contains Pfam PF03138: Plant protein family. The function of this family of plant proteins is unknown [ 22328730 NP_567509.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9372749 CHROM_POS_END:9375932 } -=| MIDDLE_POINT:9374340 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.57 60 112 185 1 895 549 XLS3_Contig1610 AT1G13570 F-box family protein, contains F-box domain Pfam:PF00646 [ 15222887 NP_172814.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4642525 CHROM_POS_END:4643927 } -=| MIDDLE_POINT:4643226 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.25 36 69 188 1 833 416 XLS3_Contig1611 AT3G48530 CBS domain-containing protein, low similarity to SP|Q9UGI9 5'-AMP-activated protein kinase, gamma-3 subunit (AMPK gamma-3 chain) (AMPK gamma3) {Homo sapiens} [ 15228397 NP_190422.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17998544 CHROM_POS_END:18000577 } -=| MIDDLE_POINT:17999560 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 261 402 1 1430 424 XLS3_Contig1612 AT2G26900 bile acid:sodium symporter family protein, low similarity to SP|Q12908 Ileal sodium/bile acid cotransporter {Homo sapiens} [ 30683305 NP_850089.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11482234 CHROM_POS_END:11484948 } -=| MIDDLE_POINT:11483591 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.42 38 65 171 1 987 409 XLS3_Contig1613 AT3G52640 nicastrin-related, contains weak similarity to Nicastrin precursor (Swiss-Prot:Q92542) (Homo sapiens) [ 42572647 NP_974419.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:19526056 CHROM_POS_END:19531268 } -=| MIDDLE_POINT:19528662 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.69 54 120 220 1 883 705 XLS3_Contig1614 AT3G28700 expressed protein, contains Pfam PF02636: Uncharacterized ACR, COG1565 [ 42565270 NP_189511.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10760817 CHROM_POS_END:10763071 } -=| MIDDLE_POINT:10761944 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.95 63 172 272 1 825 471 XLS3_Contig1615 AT3G45300 isovaleryl-CoA-dehydrogenase (IVD), identical to isovaleryl-CoA-dehydrogenase precursor (Arabidopsis thaliana) GI:5596622 [ 15230664 NP_190116.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16632644 CHROM_POS_END:16635833 } -=| MIDDLE_POINT:16634238 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 208 262 1 978 409 XLS3_Contig1616 AT1G22850 expressed protein [ AT1G22850 18395168 NP_564182.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8080660 CHROM_POS_END:8082805 } -=| MIDDLE_POINT:8081732 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.85 68 174 255 1 960 344 XLS3_Contig1617 AT3G56160 expressed protein [ AT3G56160 42565967 NP_191175.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20848712 CHROM_POS_END:20852520 } -=| MIDDLE_POINT:20850616 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.7 70 129 182 1 893 436 XLS3_Contig1618 AT5G58030 transport protein particle (TRAPP) component Bet3 family protein, very strong similarity to SPP30 (Solanum pollinated pistil) (Solanum chacoense) GI:4959712 [ 15242926 NP_200611.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:23504247 CHROM_POS_END:23505709 } -=| MIDDLE_POINT:23504978 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.12 84 33 39 1 810 195 XLS3_Contig1619 AT1G64080 expressed protein, identical to hypothetical protein GB:AAF24565 GI:6692100 from (Arabidopsis thaliana) [ 15222614 NP_176591.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:23788893 CHROM_POS_END:23790220 } -=| MIDDLE_POINT:23789556 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.28 29 123 411 1 1222 411 XLS3_Contig1620 AT5G46630 clathrin adaptor complexes medium subunit family protein, contains Pfam profile: PF00928 adaptor complexes medium subunit family [ 42573598 NP_974895.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:18937807 CHROM_POS_END:18940287 } -=| MIDDLE_POINT:18939047 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 94 249 263 1 913 441 XLS3_Contig1621 AT1G11260 glucose transporter (STP1), nearly identical to glucose transporter GB:P23586 SP|P23586 from (Arabidopsis thaliana) [ 15220330 NP_172592.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3777460 CHROM_POS_END:3780133 } -=| MIDDLE_POINT:3778796 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 349 421 1 1358 522 XLS3_Contig1622 AT1G59520 expressed protein (CW7) [ AT1G59520 30696304 NP_849828.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21865254 CHROM_POS_END:21869681 } -=| MIDDLE_POINT:21867467 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.36 61 66 107 1 997 388 XLS3_Contig1623 AT3G26590 MATE efflux family protein, similar to ripening regulated protein DDTFR18 (Lycopersicon esculentum) GI:12231296 [ 15231577 NP_189291.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9763164 CHROM_POS_END:9766496 } -=| MIDDLE_POINT:9764830 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 194 268 1 924 500 XLS3_Contig1624 AT3G20410 calmodulin-domain protein kinase isoform 9 (CPK9), identical to calmodulin-domain protein kinase CDPK isoform 9 (Arabidopsis thaliana) gi|1399265|gb|AAB03242 [ 15231140 NP_188676.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7116394 CHROM_POS_END:7118830 } -=| MIDDLE_POINT:7117612 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 283 368 1 1211 541 XLS3_Contig1625 AT2G26710 cytochrome P450, putative [ AT2G26710 15225777 NP_180239.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11387778 CHROM_POS_END:11390491 } -=| MIDDLE_POINT:11389134 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.41 36 102 282 1 906 520 XLS3_Contig1626 AT1G48600 phosphoethanolamine N-methyltransferase 2, putative (NMT2), very similar to |PEM2_ARATH Putative phosphoethanolamine N-methyltransferase 2 (EC 2.1.1.103) (SP:Q944H0){Arabidopsis thaliana} [ 42571805 NP_973993.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17969742 CHROM_POS_END:17972745 } -=| MIDDLE_POINT:17971243 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 401 485 1 1909 491 XLS3_Contig1627 AT5G10010 expressed protein [ AT5G10010 42567760 NP_196563.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3128099 CHROM_POS_END:3131453 } -=| MIDDLE_POINT:3129776 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.62 49 115 231 1 896 434 XLS3_Contig1628 AT3G57340 DNAJ heat shock N-terminal domain-containing protein, similar to SP|Q9QYI4 DnaJ homolog subfamily B member 12 Mus musculus [ 15230279 NP_191293.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21230153 CHROM_POS_END:21231256 } -=| MIDDLE_POINT:21230704 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.66 61 135 219 1 924 367 XLS3_Contig1629 AT1G76160 multi-copper oxidase type I family protein, similar to pollen-specific BP10 protein (SP|Q00624)(Brassica napus) [ 15222981 NP_177743.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:28583105 CHROM_POS_END:28585914 } -=| MIDDLE_POINT:28584509 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 347 476 1 1640 541 XLS3_Contig1630 AT1G08680 ARF GAP-like zinc finger-containing protein ZiGA4 (ZIGA4), nearly identical to ARF GAP-like zinc finger-containing protein ZiGA4 GI:10441354 from (Arabidopsis thaliana) [ 30680768 NP_850941.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2762823 CHROM_POS_END:2768390 } -=| MIDDLE_POINT:2765606 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.91 66 164 246 1 1057 649 XLS3_Contig1631 AT3G07300 eukaryotic translation initiation factor 2B family protein / eIF-2B family protein, similar to SP|P49770 Translation initiation factor eIF-2B beta subunit (eIF-2B GDP-GTP exchange factor) {Homo sapiens} [ 30680205 NP_187386.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2324973 CHROM_POS_END:2327386 } -=| MIDDLE_POINT:2326179 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.8 69 159 230 1 830 407 XLS3_Contig1632 AT3G12120 omega-6 fatty acid desaturase, endoplasmic reticulum (FAD2) / delta-12 desaturase, identical to omega-6 fatty acid desaturase, endoplasmic reticulum (FAD2) SP:P46313 (Arabidopsis thaliana (Mouse-ear cress)) (Plant Cell 6:147-158(1994)) [ 15229956 NP_187819.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3860598 CHROM_POS_END:3861749 } -=| MIDDLE_POINT:3861173 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 57 168 290 1 935 383 XLS3_Contig1633 AT1G53750 26S proteasome AAA-ATPase subunit (RPT1a), similar to 26S proteasome ATPase subunit GI:1395190 from (Spinacia oleracea) [ 15220930 NP_175778.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20069589 CHROM_POS_END:20071992 } -=| MIDDLE_POINT:20070790 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 93 217 233 1 1223 426 XLS3_Contig1634 AT4G14680 sulfate adenylyltransferase 3 / ATP-sulfurylase 3 (APS3), identical to ATP sulfurylase (APS3) (Arabidopsis thaliana) GI:1575327 [ 15233537 NP_193204.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8413438 CHROM_POS_END:8415306 } -=| MIDDLE_POINT:8414372 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 201 287 1 982 465 XLS3_Contig1635 AT3G05090 transducin family protein / WD-40 repeat family protein, contains seven G-protein beta WD-40 repeats [ 18397118 NP_566246.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1418579 CHROM_POS_END:1422729 } -=| MIDDLE_POINT:1420654 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 56 129 230 1 1091 753 XLS3_Contig1636 AT2G46710 rac GTPase activating protein, putative, similar to rac GTPase activating protein 2 (Lotus japonicus) GI:3695061 [ 30690481 NP_850458.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19199175 CHROM_POS_END:19201726 } -=| MIDDLE_POINT:19200450 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.6 52 123 235 1 885 455 XLS3_Contig1637 AT4G14580 CBL-interacting protein kinase 4 (CIPK4), identical to CBL-interacting protein kinase 4 (Arabidopsis thaliana) gi|13249503|gb|AAG01367 [ 15233500 NP_193194.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8367883 CHROM_POS_END:8369163 } -=| MIDDLE_POINT:8368523 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.99 66 173 259 1 894 426 XLS3_Contig1638 AT5G40780 lysine and histidine specific transporter, putative, strong similarity to lysine and histidine specific transporter GI:2576361 from (Arabidopsis thaliana) [ 30693663 NP_851109.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:16341051 CHROM_POS_END:16344310 } -=| MIDDLE_POINT:16342680 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 86 204 236 1 884 446 XLS3_Contig1639 AT4G33740 expressed protein [ AT4G33740 15235082 NP_195100.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:16187387 CHROM_POS_END:16188070 } -=| MIDDLE_POINT:16187728 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.27 39 81 207 1 935 227 XLS3_Contig1640 AT1G65710 expressed protein, [ AT1G65710 15218781 NP_176748.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:24440720 CHROM_POS_END:24442087 } -=| MIDDLE_POINT:24441403 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.47 34 154 441 1 1355 455 XLS3_Contig1641 AT3G14690 cytochrome P450, putative, similar to GB:Q05047 from (Catharanthus roseus) [ 15231907 NP_188087.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4937417 CHROM_POS_END:4939317 } -=| MIDDLE_POINT:4938367 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.82 50 150 299 1 972 512 XLS3_Contig1642 AT4G31240 expressed protein [ AT4G31240 18417767 NP_567869.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:15176643 CHROM_POS_END:15177992 } -=| MIDDLE_POINT:15177317 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.78 53 141 264 1 912 392 XLS3_Contig1643 AT3G23990 chaperonin (CPN60) (HSP60), identical to SWISS-PROT:P29197- chaperonin CPN60, mitochondrial precursor (HSP60) (Arabidopsis thaliana) [ 15229559 NP_189041.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8669020 CHROM_POS_END:8672285 } -=| MIDDLE_POINT:8670652 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 89 229 257 1 985 577 XLS3_Contig1644 AT5G51230 embryonic flower 2 (EMF2), identical to embryonic flower 2 (Arabidopsis thaliana) GI:14276050 [ 30696023 NP_851168.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:20841379 CHROM_POS_END:20846570 } -=| MIDDLE_POINT:20843974 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.71 56 138 244 1 962 631 XLS3_Contig1645 AT5G11520 aspartate aminotransferase, chloroplast / transaminase A (ASP3) (YLS4), identical to SP|P46644 Aspartate aminotransferase, chloroplast precursor (EC 2.6.1.1) (Transaminase A) {Arabidopsis thaliana} [ 15239078 NP_196713.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3685258 CHROM_POS_END:3687722 } -=| MIDDLE_POINT:3686490 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 241 293 1 1024 449 XLS3_Contig1646 AT5G19760 dicarboxylate/tricarboxylate carrier (DTC), identical to dicarboxylate/tricarboxylate carrier (Arabidopsis thaliana) GI:19913113 [ 15241167 NP_197477.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6679593 CHROM_POS_END:6681847 } -=| MIDDLE_POINT:6680720 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 86 243 281 1 922 298 XLS3_Contig1647 AT5G56350 pyruvate kinase, putative, similar to pyruvate kinase, cytosolic isozyme (Nicotiana tabacum) SWISS-PROT:Q42954 [ 15241190 NP_200446.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:22837480 CHROM_POS_END:22839755 } -=| MIDDLE_POINT:22838617 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 89 214 238 1 906 498 XLS3_Contig1648 AT1G32930 galactosyltransferase family protein, contains Pfam profile: PF01762 galactosyltransferase [ 15223337 NP_174569.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11931960 CHROM_POS_END:11934379 } -=| MIDDLE_POINT:11933169 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.73 57 137 238 1 962 399 XLS3_Contig1649 AT4G38470 protein kinase family protein, similar to protein kinase (gi:170047) from Glycine max [ 18420244 NP_568041.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17999426 CHROM_POS_END:18003545 } -=| MIDDLE_POINT:18001485 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.89 54 182 336 1 1172 575 XLS3_Contig1650 AT1G77210 sugar transporter, putative, similar to monosaccharide transporter PaMst-1 (Picea abies) GI:2258137, sugar carrier protein GI:169735 from (Ricinus communis), glucose transporter (Saccharum hybrid cultivar H65-7052) GI:347855 [ 15223861 NP_177845.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:29013930 CHROM_POS_END:29015874 } -=| MIDDLE_POINT:29014902 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 235 305 1 1045 504 XLS3_Contig1651 AT5G60790 ABC transporter family protein, similar to ABC transporter homolog PnATH GI:7573600 from (Populus nigra) [ 15239436 NP_200887.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:24470986 CHROM_POS_END:24472993 } -=| MIDDLE_POINT:24471989 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.98 76 182 238 1 869 595 XLS3_Contig1652 AT1G49990 similar to F-box family protein [Arabidopsis thaliana] (TAIR:At3g26010.1) [ 79362505 NP_175421.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18517364 CHROM_POS_END:18518656 } -=| MIDDLE_POINT:18518010 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.13 30 64 208 1 980 430 XLS3_Contig1653 AT1G32120 expressed protein, contains Pfam profile PF04819: Family of unknown function (DUF716) (Plant viral-response family) [ 15222573 NP_174491.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11552906 CHROM_POS_END:11558588 } -=| MIDDLE_POINT:11555747 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.92 76 152 200 1 928 1206 XLS3_Contig1654 AT2G03890 phosphatidylinositol 3- and 4-kinase family protein, low similarity to phosphatidylinositol 4-kinase type-II beta (Homo sapiens) GI:20159767 [ 18395629 NP_565307.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1186196 CHROM_POS_END:1188148 } -=| MIDDLE_POINT:1187172 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.85 70 158 225 1 992 650 XLS3_Contig1655 AT5G55730 fasciclin-like arabinogalactan-protein (FLA1), identical to gi|13377776||AAK20857|13377775|gb|AF333970 [ 15240570 NP_200384.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:22575601 CHROM_POS_END:22577618 } -=| MIDDLE_POINT:22576609 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.9 60 164 269 1 917 424 XLS3_Contig1656 AT5G25400 phosphate translocator-related, low siimilarity to phosphoenolpyruvate/phosphate translocator precursor (Mesembryanthemum crystallinum) GI:9295275, SP|P52178 Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor (CTPT) {Brassica oleracea} [ 18420914 NP_568469.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8823286 CHROM_POS_END:8824335 } -=| MIDDLE_POINT:8823810 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 84 288 340 1 1381 349 XLS3_Contig1657 AT1G78180 mitochondrial substrate carrier family protein, contains Pfam profile: PF00153 mitochondrial carrier protein [ 42563311 NP_565171.3 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:29422040 CHROM_POS_END:29423418 } -=| MIDDLE_POINT:29422729 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.39 55 82 149 1 932 342 XLS3_Contig1658 AT4G25110 latex-abundant family protein (AMC2) / caspase family protein, contains similarity to latex-abundant protein (Hevea brasiliensis) gb:AAD13216 [ 42567134 NP_194241.3 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:12887748 CHROM_POS_END:12889963 } -=| MIDDLE_POINT:12888855 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.51 40 118 295 1 954 418 XLS3_Contig1659 AT5G49690 UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase [ 15240534 NP_199780.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20207194 CHROM_POS_END:20208576 } -=| MIDDLE_POINT:20207885 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.67 49 124 250 1 877 460 XLS3_Contig1660 AT1G66430 pfkB-type carbohydrate kinase family protein, contains Pfam profile: PF00294 pfkB family carbohydrate kinase [ 22330456 NP_564875.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:24782063 CHROM_POS_END:24784056 } -=| MIDDLE_POINT:24783059 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.76 75 149 198 1 910 384 XLS3_Contig1661 AT5G03610 GDSL-motif lipase/hydrolase family protein, low similarity to SP|P40602 Anther-specific proline-rich protein APG precursor {Arabidopsis thaliana} [ 15242811 NP_195981.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:915649 CHROM_POS_END:918325 } -=| MIDDLE_POINT:916987 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.81 53 153 288 1 892 359 XLS3_Contig1662 AT4G34460 guanine nucleotide-binding protein beta subunit (GB1) / GTP-binding protein beta subunit (AGB1) / transducin, contains 7 WD-40 repeats (PF00400) [ 15236122 NP_195172.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:16477397 CHROM_POS_END:16479270 } -=| MIDDLE_POINT:16478333 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 232 272 1 1030 377 XLS3_Contig1663 AT5G42920 expressed protein [ AT5G42920 42573553 NP_974873.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17223538 CHROM_POS_END:17226750 } -=| MIDDLE_POINT:17225144 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 196 281 1 932 819 XLS3_Contig1664 AT4G33510 2-dehydro-3-deoxyphosphoheptonate aldolase 2 / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2 / DAHP synthetase 2 (DHS2), nearly identical to SP|Q00218 [ 15234217 NP_195077.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16116499 CHROM_POS_END:16118552 } -=| MIDDLE_POINT:16117525 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 195 286 1 940 507 XLS3_Contig1665 AT4G39150 DNAJ heat shock N-terminal domain-containing protein, similar to SP|P39101 CAJ1 protein, Saccharomyces cerevisiae, PIR2:S48085 [ 15234962 NP_195626.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18233645 CHROM_POS_END:18235734 } -=| MIDDLE_POINT:18234689 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 184 267 1 913 345 XLS3_Contig1666 AT3G19895 expressed protein [ AT3G19895 30685540 NP_683575.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6917536 CHROM_POS_END:6921217 } -=| MIDDLE_POINT:6919376 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.52 54 99 182 1 883 554 XLS3_Contig1667 AT1G68810 basic helix-loop-helix (bHLH) family protein, contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain [ 18409132 NP_564944.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:25864952 CHROM_POS_END:25866545 } -=| MIDDLE_POINT:25865748 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.14 50 45 90 1 919 368 XLS3_Contig1668 AT1G01350 zinc finger (CCCH-type/C3HC4-type RING finger) family protein, similar to SP|O15541 Zinc finger protein 183 {Homo sapiens} [ 15223384 NP_171642.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:136732 CHROM_POS_END:139568 } -=| MIDDLE_POINT:138150 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 227 333 1 1408 586 XLS3_Contig1669 AT5G36790 phosphoglycolate phosphatase, putative, similar to phosphoglycolate phosphatase precursor (Chlamydomonas reinhardtii) GI:15982558 [ 15239406 NP_198495.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14498459 CHROM_POS_END:14500960 } -=| MIDDLE_POINT:14499709 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 213 298 1 1089 362 XLS3_Contig1670 AT4G32650 inward rectifying potassium channel, putative (KAT3) (AKT4) (KC1), identical to K+ inward rectifying channel protein KC1 (Arabidopsis thaliana) gi|4090537|gb|AAC98810 [ 15233870 NP_194991.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:15751487 CHROM_POS_END:15754802 } -=| MIDDLE_POINT:15753144 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 288 447 1 1364 662 XLS3_Contig1671 AT4G21210 expressed protein, contains Pfam domain PF03618: Domain of unknown function (DUF299) [ 15233554 NP_193853.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:11307012 CHROM_POS_END:11308597 } -=| MIDDLE_POINT:11307804 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.71 54 150 274 1 865 403 XLS3_Contig1672 AT4G26620 sucrase-related [ AT4G26620 18416788 NP_567751.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13427605 CHROM_POS_END:13429883 } -=| MIDDLE_POINT:13428744 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 212 297 1 959 443 XLS3_Contig1673 AT1G30460 similar to YT521-B-like family protein [Arabidopsis thaliana] (TAIR:At4g11970.2) [ 79356321 NP_174334.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:10771451 CHROM_POS_END:10775305 } -=| MIDDLE_POINT:10773378 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.64 48 128 262 1 975 631 XLS3_Contig1674 AT5G30510 30S ribosomal protein S1, putative, similar to Swiss-Prot:P29344 30S ribosomal protein S1, chloroplast precursor (CS1) (Spinacia oleracea) [ 30692346 NP_850903.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11636492 CHROM_POS_END:11638453 } -=| MIDDLE_POINT:11637472 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 212 294 1 942 416 XLS3_Contig1675 AT3G27820 monodehydroascorbate reductase, putative, similar to cytosolic monodehydroascorbate reductase GB:BAA77214 (Oryza sativa) [ 15232273 NP_189420.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10316486 CHROM_POS_END:10319118 } -=| MIDDLE_POINT:10317802 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 84 256 303 1 946 488 XLS3_Contig1676 AT5G62890 similar to xanthine/uracil permease family protein [Arabidopsis thaliana] (TAIR:At1g10540.1) [ 79600443 NP_851251.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:25260949 CHROM_POS_END:25264301 } -=| MIDDLE_POINT:25262625 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 209 268 1 894 532 XLS3_Contig1677 AT2G31160 expressed protein, contains Pfam profile PF04852: Protein of unknown function (DUF640) [ 18402578 NP_565716.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:13284980 CHROM_POS_END:13285639 } -=| MIDDLE_POINT:13285309 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.56 65 104 159 1 1125 219 XLS3_Contig1678 AT3G58060 cation efflux family protein / metal tolerance protein, putative (MTPc3), member of the cation diffusion facilitator (CDF) family, or cation efflux (CE) family, PMID:11500563 [ 42566022 NP_191365.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21508755 CHROM_POS_END:21510653 } -=| MIDDLE_POINT:21509704 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 194 286 1 1073 411 XLS3_Contig1679 AT4G15410 UBX domain-containing protein, low similarity to XY40 protein (Rattus norvegicus) GI:2547025 [ 18414442 NP_567463.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8814868 CHROM_POS_END:8816596 } -=| MIDDLE_POINT:8815732 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.72 51 155 299 1 889 421 XLS3_Contig1680 no_hits_found 0 0 XLS3_Contig1681 AT4G03250 homeobox-leucine zipper family protein, similar to homeobox transcription factor Hox7 (Lycopersicon peruvianum) GI:19486 [ 15236271 NP_192234.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1425622 CHROM_POS_END:1427744 } -=| MIDDLE_POINT:1426683 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.33 48 82 170 1 945 476 XLS3_Contig1682 no_hits_found 0 0 XLS3_Contig1683 AT5G53750 similar to CBS domain-containing protein [Arabidopsis thaliana] (TAIR:At4g27460.1) [ 79537386 NP_200186.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21834642 CHROM_POS_END:21835949 } -=| MIDDLE_POINT:21835295 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.66 51 83 161 1 888 408 XLS3_Contig1684 AT1G21380 VHS domain-containing protein / GAT domain-containing protein, weak similarity to Hrs (Rattus norvegicus) GI:8547026 [ 18394983 NP_564138.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7485795 CHROM_POS_END:7488021 } -=| MIDDLE_POINT:7486908 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.95 71 162 227 1 923 506 XLS3_Contig1685 AT4G33410 signal peptide peptidase family protein, contains Pfam domain PF04258: Membrane protein of unknown function (DUF435) [ 18418206 NP_567918.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16081643 CHROM_POS_END:16083122 } -=| MIDDLE_POINT:16082382 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 266 334 1 1692 372 XLS3_Contig1686 AT3G57810 OTU-like cysteine protease family protein, contains Pfam profile PF02338: OTU-like cysteine protease [ 30694718 NP_850716.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21427313 CHROM_POS_END:21428786 } -=| MIDDLE_POINT:21428049 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.31 47 69 144 1 940 317 XLS3_Contig1687 AT1G21150 mitochondrial transcription termination factor family protein / mTERF family protein, weak similarity to mtDBP protein (Paracentrotus lividus) GI:4584695 [ 15218140 NP_173539.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7406395 CHROM_POS_END:7407567 } -=| MIDDLE_POINT:7406981 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.17 26 59 220 1 905 390 XLS3_Contig1688 AT1G32070 GCN5-related N-acetyltransferase (GNAT) family protein / nuclear shuttle interacting protein (NSI), very low similarity to SP|P09453 Ribosomal-protein-alanine acetyltransferase (EC 2.3.1.128) {Escherichia coli} [ 42571719 NP_973950.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:11534831 CHROM_POS_END:11536269 } -=| MIDDLE_POINT:11535550 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.75 63 144 228 1 994 258 XLS3_Contig1689 AT4G34520 fatty acid elongase 1 (FAE1), identical to fatty acid elongase 1 (GI:881615) [ 15236144 NP_195178.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16494210 CHROM_POS_END:16495730 } -=| MIDDLE_POINT:16494970 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.44 46 80 172 1 868 506 XLS3_Contig1690 AT4G28610 myb family transcription factor, putative / phosphate starvation response regulator, putative (PHR1), contains Pfam profile: PF00249 myb-like DNA-binding domain [ 22329004 NP_194590.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14133170 CHROM_POS_END:14134957 } -=| MIDDLE_POINT:14134063 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.31 40 77 188 1 912 409 XLS3_Contig1691 AT5G62810 peroxisomal protein (PEX14), identical to PEX14 (Arabidopsis thaliana) GI:11094252 [ 30697742 NP_201087.3 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:25237549 CHROM_POS_END:25240797 } -=| MIDDLE_POINT:25239173 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.98 55 196 355 1 1177 507 XLS3_Contig1692 AT1G28050 zinc finger (B-box type) family protein [ AT1G28050 15217814 NP_174126.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9775755 CHROM_POS_END:9777644 } -=| MIDDLE_POINT:9776699 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.45 40 112 278 1 960 433 XLS3_Contig1693 AT5G66240 transducin family protein / WD-40 repeat family protein, contains Pfam PF00400: WD domain, G-beta repeat (4 copies, 1 weak) [ 18425050 NP_569031.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:26483574 CHROM_POS_END:26485427 } -=| MIDDLE_POINT:26484500 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 204 243 1 904 331 XLS3_Contig1694 AT1G04950 TATA box-binding protein-associated factor (TAF) family protein, contains Pfam profile: PF02969 TATA box binding protein associated factor [ 15220358 NP_171987.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1403605 CHROM_POS_END:1407183 } -=| MIDDLE_POINT:1405394 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.65 62 71 113 1 833 549 XLS3_Contig1695 AT1G78850 curculin-like (mannose-binding) lectin family protein, low similarity to ser/thr protein kinase from Zea mays (GI:2598067) [ 15219200 NP_178006.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:29646965 CHROM_POS_END:29648290 } -=| MIDDLE_POINT:29647627 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 47 209 438 1 1482 441 XLS3_Contig1696 AT3G01120 cystathionine gamma-synthase, chloroplast / O-succinylhomoserine (Thiol)-lyase (CGS), identical to SP|P55217 Cystathionine gamma-synthase, chloroplast precursor (EC 4.2.99.9) (CGS) (O-succinylhomoserine (Thiol)-lyase) {Arabidopsis thaliana} [ 15232042 NP_186761.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:39241 CHROM_POS_END:41872 } -=| MIDDLE_POINT:40556 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 235 360 1 1103 563 XLS3_Contig1697 AT5G58290 26S proteasome AAA-ATPase subunit (RPT3), identical to 26S proteasome AAA-ATPase subunit RPT3 GI:6652882 from (Arabidopsis thaliana) [ 15237159 NP_200637.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:23586381 CHROM_POS_END:23588342 } -=| MIDDLE_POINT:23587361 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 92 381 414 1 1510 408 XLS3_Contig1698 AT5G13810 glutaredoxin family protein [ AT5G13810 15240723 NP_196885.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4455772 CHROM_POS_END:4456596 } -=| MIDDLE_POINT:4456184 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.55 53 122 226 1 902 274 XLS3_Contig1699 AT4G36220 cytochrome P450 84A1 (CYP84A1) / ferulate-5-hydroxylase (FAH1), identical to Cytochrome P450 84A1 (Ferulate-5-hydroxylase) (SP|Q42600) (Arabidopsis thaliana) [ 15234332 NP_195345.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17137587 CHROM_POS_END:17139622 } -=| MIDDLE_POINT:17138604 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 226 331 1 1052 520 XLS3_Contig1700 AT2G40890 cytochrome P450 98A3, putative (CYP98A3), identical to Cytochrome P450 98A3 (SP|O22203) (Arabidopsis thaliana) [ 30688445 NP_850337.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17065369 CHROM_POS_END:17067610 } -=| MIDDLE_POINT:17066489 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 238 350 1 1162 508 XLS3_Contig1701 AT1G08510 acyl-(acyl carrier protein) thioesterase / acyl-ACP thioesterase / oleoyl-(acyl-carrier protein) hydrolase / S-acyl fatty acid synthase thioesterase, identical to acyl-(acyl carrier protein) thioesterase (Arabidopsis thaliana) GI:804948 [ 15223236 NP_172327.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2691549 CHROM_POS_END:2693412 } -=| MIDDLE_POINT:2692480 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.29 51 54 104 1 866 412 XLS3_Contig1702 AT1G15960 similar to NRAMP metal ion transporter 4 (NRAMP4) [Arabidopsis thaliana] (TAIR:At5g67330.1) [ 79346106 NP_173048.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5482196 CHROM_POS_END:5485060 } -=| MIDDLE_POINT:5483628 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.94 78 166 212 1 873 527 XLS3_Contig1703 AT1G13570 F-box family protein, contains F-box domain Pfam:PF00646 [ AT1G13570 15222887 NP_172814.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4642525 CHROM_POS_END:4643927 } -=| MIDDLE_POINT:4643226 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.34 31 102 325 1 1093 416 XLS3_Contig1704 AT4G31880 expressed protein [ AT4G31880 30689185 NP_194916.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15419441 CHROM_POS_END:15423945 } -=| MIDDLE_POINT:15421693 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.74 54 138 253 1 1143 873 XLS3_Contig1705 no_hits_found 0 0 XLS3_Contig1706 no_hits_found 0 0 XLS3_Contig1707 AT5G16260 RNA recognition motif (RRM)-containing protein, similar to Tat-SF1 - Homo sapiens, GI:1667611 [ 15237311 NP_197130.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5311366 CHROM_POS_END:5315499 } -=| MIDDLE_POINT:5313432 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.82 50 158 313 1 887 519 XLS3_Contig1708 AT1G70150 zinc finger (MYND type) family protein, contains Pfam profile PF01753: MYND finger [ 22330536 NP_177172.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:26420561 CHROM_POS_END:26422880 } -=| MIDDLE_POINT:26421720 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.16 46 36 78 1 1730 387 XLS3_Contig1709 AT1G10430 serine/threonine protein phosphatase PP2A-1 catalytic subunit (PP2A1), identical to SP|Q07098 Serine/threonine protein phosphatase PP2A-1 catalytic subunit (EC 3.1.3.16) {Arabidopsis thaliana} [ 15218524 NP_172514.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3428706 CHROM_POS_END:3430438 } -=| MIDDLE_POINT:3429572 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 93 196 209 1 965 306 XLS3_Contig1710 AT2G47470 thioredoxin family protein, similar to protein disulfide isomerase (Dictyostelium discoideum) GI:2627440 [ 15226610 NP_182269.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:19488573 CHROM_POS_END:19490753 } -=| MIDDLE_POINT:19489663 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 216 290 1 929 361 XLS3_Contig1711 AT3G21750 UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase [ 15233149 NP_188812.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7664572 CHROM_POS_END:7665993 } -=| MIDDLE_POINT:7665282 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.63 44 131 294 1 873 473 XLS3_Contig1712 AT5G55630 outward rectifying potassium channel (KCO1), identical to kco1 (Arabidopsis thaliana) gi|2230761|emb|CAA69158 of the 2 pore, 4 transmembrane (2P/4TM) K+ channel family, PMID:11500563 [ 30696631 NP_851196.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:22548944 CHROM_POS_END:22550119 } -=| MIDDLE_POINT:22549531 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.68 53 131 245 1 928 363 XLS3_Contig1713 AT1G14330 kelch repeat-containing F-box family protein, contains Pfam profile PF01344: Kelch motif [ 15223715 NP_172885.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4890370 CHROM_POS_END:4891695 } -=| MIDDLE_POINT:4891032 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.3 45 74 162 1 847 441 XLS3_Contig1714 AT1G06550 enoyl-CoA hydratase/isomerase family protein, similar to CHY1 (gi:8572760) [ 30679729 NP_172142.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2003833 CHROM_POS_END:2006563 } -=| MIDDLE_POINT:2005198 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.99 73 174 238 1 981 387 XLS3_Contig1715 AT3G19760 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative, contains DEAD/DEAH helicase domain [ 15230945 NP_188610.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6863796 CHROM_POS_END:6866248 } -=| MIDDLE_POINT:6865022 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 230 269 1 932 408 XLS3_Contig1716 no_hits_found 0 0 XLS3_Contig1717 AT2G46370 auxin-responsive GH3 family protein, similar to auxin-responsive GH3 product (Glycine max) GI:18591 [ 18407057 NP_566071.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:19041415 CHROM_POS_END:19043442 } -=| MIDDLE_POINT:19042428 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 61 254 412 1 1303 575 XLS3_Contig1718 AT1G58120 expressed protein [ AT1G58120 30696213 NP_176109.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21524627 CHROM_POS_END:21525889 } -=| MIDDLE_POINT:21525258 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.15 35 57 161 1 1047 420 XLS3_Contig1719 AT2G25300 similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:At4g32120.1) [ 79562781 NP_180102.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:10779001 CHROM_POS_END:10781235 } -=| MIDDLE_POINT:10780118 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.75 71 138 194 1 830 346 XLS3_Contig1720 no_hits_found 0 0 XLS3_Contig1721 AT5G66250 kinectin-related, contains weak similarity to kinectin (GI:3766232) (Vulpes vulpes) [ 30698209 NP_851282.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:26486276 CHROM_POS_END:26487602 } -=| MIDDLE_POINT:26486939 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.41 51 97 190 1 920 306 XLS3_Contig1722 AT3G59630 diphthamide synthesis DPH2 family protein, contains InterPro accession IPR002728: Diphthamide synthesis DPH2 protein [ 15231723 NP_191522.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:22036332 CHROM_POS_END:22038753 } -=| MIDDLE_POINT:22037542 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.78 54 150 276 1 868 491 XLS3_Contig1723 AT1G53240 malate dehydrogenase (NAD), mitochondrial, identical to mitochondrial NAD-dependent malate dehydrogenase GI:3929649 SP|Q9ZP06 from (Arabidopsis thaliana) [ 18404382 NP_564625.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19858634 CHROM_POS_END:19860470 } -=| MIDDLE_POINT:19859552 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 84 289 342 1 1438 341 XLS3_Contig1724 AT3G61350 SKP1 interacting partner 4 (SKIP4), almost idential to SKP1 interacting partner 4 GI:10716953 from (Arabidopsis thaliana), 42 aa extension at N-terminal [ 18411974 NP_567112.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22714178 CHROM_POS_END:22715349 } -=| MIDDLE_POINT:22714763 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.71 48 126 260 1 1311 358 XLS3_Contig1725 AT1G16560 Per1-like family protein, contains Pfam profile PF04080: Per1-like [ 15219283 NP_173104.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:5668938 CHROM_POS_END:5670336 } -=| MIDDLE_POINT:5669637 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 176 259 1 1048 342 XLS3_Contig1726 AT1G19710 glycosyl transferase family 1 protein, contains Pfam profile: PF00534 glycosyl transferases group 1 [ 15223628 NP_173401.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6814911 CHROM_POS_END:6816707 } -=| MIDDLE_POINT:6815809 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.59 61 120 195 1 939 479 XLS3_Contig1727 AT3G15610 transducin family protein / WD-40 repeat family protein, contains 7 WD-40 repeats (PF00400) [ 18400838 NP_566519.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5291083 CHROM_POS_END:5292803 } -=| MIDDLE_POINT:5291943 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.97 85 168 197 1 1030 341 XLS3_Contig1728 AT1G53940 GDSL-motif lipase/hydrolase family protein, similar to lipase GI:1145627 from (Arabidopsis thaliana) [ 15220995 NP_175797.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20146947 CHROM_POS_END:20149448 } -=| MIDDLE_POINT:20148197 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.52 42 103 243 1 1008 436 XLS3_Contig1729 AT2G39840 serine/threonine protein phosphatase PP1 isozyme 4 (TOPP4) / phosphoprotein phosphatase 1, identical to SP|P48484 Serine/threonine protein phosphatase PP1 isozyme 4 (EC 3.1.3.16) {Arabidopsis thaliana}, phosphoprotein phosphatase 1 GI:166801 (Arabidopsis thaliana) [ 15225576 NP_181514.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16634508 CHROM_POS_END:16635867 } -=| MIDDLE_POINT:16635187 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.87 86 150 173 1 953 321 XLS3_Contig1730 AT3G52610 expressed protein [ AT3G52610 18409645 NP_566970.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19521491 CHROM_POS_END:19523525 } -=| MIDDLE_POINT:19522508 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.6 38 133 349 1 1027 475 XLS3_Contig1731 AT4G13030 expressed protein [ AT4G13030 42566738 NP_193039.3 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7607397 CHROM_POS_END:7609653 } -=| MIDDLE_POINT:7608525 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.46 38 115 297 1 944 481 XLS3_Contig1732 AT3G11810 expressed protein [ AT3G11810 15229864 NP_187787.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3727825 CHROM_POS_END:3728871 } -=| MIDDLE_POINT:3728348 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.4 38 104 270 1 863 348 XLS3_Contig1733 AT4G30110 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein / heavy-metal-associated domain-containing protein, similar to cadmium efflux pump protein from Geobacillus stearothermophilus (GI:16753175), cadmium resistance protein B from Staphylococcus aureus (GI:14020985) [ 15234620 NP_194740.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14720259 CHROM_POS_END:14724583 } -=| MIDDLE_POINT:14722421 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.44 41 116 280 1 886 951 XLS3_Contig1734 AT3G52870 calmodulin-binding family protein, contains Pfam profile PF00612: IQ calmodulin-binding motif [ 15231700 NP_190855.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19604343 CHROM_POS_END:19606664 } -=| MIDDLE_POINT:19605503 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 188 243 1 1182 456 XLS3_Contig1735 AT3G03530 phosphoesterase family protein, low similarity to SP|P95246 Phospholipase C 2 precursor (EC 3.1.4.3) {Mycobacterium tuberculosis} [ 18396577 NP_566206.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:842693 CHROM_POS_END:844977 } -=| MIDDLE_POINT:843835 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 190 294 1 896 538 XLS3_Contig1736 AT1G19250 flavin-containing monooxygenase family protein / FMO family protein, low similarity to SP|P97501 Dimethylaniline monooxygenase (N-oxide forming) 3 (EC 1.14.13.8) (Hepatic flavin-containing monooxygenase 3) (FMO 3) {Mus musculus} [ 42562169 NP_173359.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6650647 CHROM_POS_END:6653044 } -=| MIDDLE_POINT:6651845 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.57 39 113 283 1 897 515 XLS3_Contig1737 AT5G05090 myb family transcription factor, contains Pfam profile: PF00249 myb-like DNA-binding domain [ 15238416 NP_196128.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1503394 CHROM_POS_END:1504194 } -=| MIDDLE_POINT:1503794 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.68 63 116 182 1 954 266 XLS3_Contig1738 AT5G35735 auxin-responsive family protein, similar to auxin-induced protein AIR12 GI:11357190 (Arabidopsis thaliana) [ 18421491 NP_568531.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13918143 CHROM_POS_END:13920164 } -=| MIDDLE_POINT:13919153 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.8 51 145 283 1 901 404 XLS3_Contig1739 no_hits_found 0 0 XLS3_Contig1740 AT4G37650 short-root transcription factor (SHR) [ AT4G37650 15235646 NP_195480.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17691865 CHROM_POS_END:17693460 } -=| MIDDLE_POINT:17692662 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 52 212 403 1 1419 531 XLS3_Contig1741 AT1G53570 mitogen-activated protein kinase kinase kinase (MAPKKK), putative (MAP3Ka), identical to MEK kinase (MAP3Ka)(Arabidopsis thaliana) gi|4204912|gb|AAD10848 [ 18404528 NP_564635.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:19991059 CHROM_POS_END:19994401 } -=| MIDDLE_POINT:19992730 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 59 306 515 1 1704 609 XLS3_Contig1742 AT2G16860 GCIP-interacting family protein, similar to GCIP-interacting protein mp29 (GI:27372623) (Mus musculus) [ 18398236 NP_565396.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7311221 CHROM_POS_END:7313041 } -=| MIDDLE_POINT:7312131 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 200 294 1 1097 298 XLS3_Contig1743 AT2G21170 triosephosphate isomerase, chloroplast, putative, similar to Triosephosphate isomerase, chloroplast precursor: SP|P48496 from Spinacia oleracea, SP|P46225 from Secale cereale [ 15226479 NP_179713.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9078128 CHROM_POS_END:9080187 } -=| MIDDLE_POINT:9079157 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 248 309 1 1091 315 XLS3_Contig1744 AT1G48030 dihydrolipoamide dehydrogenase 1, mitochondrial / lipoamide dehydrogenase 1 (MTLPD1), identical to GB:AAF34795 (gi:12704696) from (Arabidopsis thaliana) [ 15221044 NP_175237.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17721101 CHROM_POS_END:17722810 } -=| MIDDLE_POINT:17721955 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 272 331 1 1047 507 XLS3_Contig1745 AT5G22850 aspartyl protease family protein, contains Pfam profile: PF00026 eukaryotic aspartyl protease [ 30688682 NP_197676.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7633720 CHROM_POS_END:7636301 } -=| MIDDLE_POINT:7635010 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 161 247 1 1644 493 XLS3_Contig1746 AT4G22930 dihydroorotase, mitochondrial / DHOase (PYR4), identical to SP|O04904 Dihydroorotase, mitochondrial precursor (EC 3.5.2.3) (DHOase) {Arabidopsis thaliana} [ 15235865 NP_194024.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12019326 CHROM_POS_END:12021211 } -=| MIDDLE_POINT:12020268 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 213 288 1 963 377 XLS3_Contig1747 AT1G80560 3-isopropylmalate dehydrogenase, chloroplast, putative, strong similarity to 3-ISOPROPYLMALATE DEHYDROGENASE PRECURSOR GB:P29102 SP|P29102 from (Brassica napus) [ 15220167 NP_178171.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:30292725 CHROM_POS_END:30295018 } -=| MIDDLE_POINT:30293871 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 243 314 1 1080 405 XLS3_Contig1748 no_hits_found 0 0 XLS3_Contig1749 AT1G18080 WD-40 repeat family protein / auxin-dependent protein (ARCA) / guanine nucleotide-binding protein beta subunit, putative, identical to SP|O24456 Guanine nucleotide-binding protein beta subunit-like protein (WD-40 repeat auxin-dependent protein ARCA) {Arabidopsis thaliana} [ 15220941 NP_173248.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6222318 CHROM_POS_END:6223894 } -=| MIDDLE_POINT:6223106 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 219 255 1 836 327 XLS3_Contig1750 AT5G41080 glycerophosphoryl diester phosphodiesterase family protein, weak similarity to SP|P37965 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) {Bacillus subtilis} [ 15237552 NP_198924.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:16459086 CHROM_POS_END:16461063 } -=| MIDDLE_POINT:16460074 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.73 57 143 248 1 931 374 XLS3_Contig1751 AT5G38990 protein kinase family protein, contains protein kinase domain, Pfam:PF00069 [ 15241605 NP_198715.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15626054 CHROM_POS_END:15628696 } -=| MIDDLE_POINT:15627375 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.5 49 109 219 1 712 880 XLS3_Contig1752 AT1G51630 expressed protein, contains Pfam PF03138: Plant protein family. The function of this family of plant proteins is unknown [ 30695023 NP_175574.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19145809 CHROM_POS_END:19147750 } -=| MIDDLE_POINT:19146779 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 58 252 428 1 1889 423 XLS3_Contig1753 AT5G49360 glycosyl hydrolase family 3 protein [ AT5G49360 15239867 NP_199747.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20029405 CHROM_POS_END:20033885 } -=| MIDDLE_POINT:20031645 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 240 303 1 1003 774 XLS3_Contig1754 AT3G16350 myb family transcription factor, [ AT3G16350 15228185 NP_188256.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5547834 CHROM_POS_END:5549403 } -=| MIDDLE_POINT:5548618 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.63 47 141 295 1 937 387 XLS3_Contig1755 AT4G08150 homeobox protein knotted-1 like 1 (KNAT1), identical to homeobox protein knotted-1 like 1 (KNAT1) SP:P46639 from (Arabidopsis thaliana) [ 15236418 NP_192555.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5147966 CHROM_POS_END:5150607 } -=| MIDDLE_POINT:5149286 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.41 42 101 240 1 968 398 XLS3_Contig1756 AT4G23650 calcium-dependent protein kinase, putative / CDPK, putative, similar to calcium-dependent protein kinase (Marchantia polymorpha) gi|5162877|dbj|BAA81748 [ 15236560 NP_194096.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12324977 CHROM_POS_END:12327425 } -=| MIDDLE_POINT:12326201 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 190 228 1 903 529 XLS3_Contig1757 no_hits_found 0 0 XLS3_Contig1758 AT2G19070 transferase family protein, similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (gi:2239091) [ 15224709 NP_179497.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8267267 CHROM_POS_END:8269040 } -=| MIDDLE_POINT:8268153 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 53 234 439 1 1380 451 XLS3_Contig1759 AT4G37760 squalene monooxygenase, putative / squalene epoxidase, putative, similar to SP|O65404 (SE 1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2) [ 18420113 NP_568033.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17744079 CHROM_POS_END:17746420 } -=| MIDDLE_POINT:17745249 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.84 65 157 241 1 853 525 XLS3_Contig1760 AT3G08720 serine/threonine protein kinase (PK19), identical to serine/threonine-protein kinase AtPK19 (Ribosomal-protein S6 kinase homolog) (Arabidopsis thaliana) SWISS-PROT:Q39030 [ 15231959 NP_187484.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2648631 CHROM_POS_END:2650413 } -=| MIDDLE_POINT:2649522 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 135 177 1 1694 471 XLS3_Contig1761 AT2G33630 3-beta hydroxysteroid dehydrogenase/isomerase family protein, contains Pfam profile PF01073 3-beta hydroxysteroid dehydrogenase/isomerase domain [ 15226138 NP_180921.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14244027 CHROM_POS_END:14245810 } -=| MIDDLE_POINT:14244918 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 191 266 1 920 480 XLS3_Contig1762 AT4G12740 adenine-DNA glycosylase-related / MYH-related, similar to MYH (GI:18845094) (Rattus norvegicus) [ 42566730 NP_193010.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7494575 CHROM_POS_END:7497593 } -=| MIDDLE_POINT:7496084 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.77 61 143 233 1 902 630 XLS3_Contig1763 AT2G20990 C2 domain-containing protein (sytA), similar to Ca2+-dependent lipid-binding protein (CLB1) GI:2789434 from (Lycopersicon esculentum) [ 18399541 NP_565495.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9021908 CHROM_POS_END:9024910 } -=| MIDDLE_POINT:9023409 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 195 254 1 1048 541 XLS3_Contig1764 AT4G10050 hydrolase, alpha/beta fold family protein, similar to protein phosphatase methylesterase-1 (Homo sapiens) GI:5533003 [ 18413291 NP_567350.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6284617 CHROM_POS_END:6287183 } -=| MIDDLE_POINT:6285900 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 60 206 338 1 1410 350 XLS3_Contig1765 AT1G30700 FAD-binding domain-containing protein, similar to SP|P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) (Eschscholzia californica) [ 15221473 NP_174357.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10892605 CHROM_POS_END:10894419 } -=| MIDDLE_POINT:10893512 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.74 49 138 278 1 869 527 XLS3_Contig1766 AT3G60800 zinc finger (DHHC type) family protein, contains DHHC zinc finger domain PF01529 [ 22331887 NP_191639.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:22478461 CHROM_POS_END:22480248 } -=| MIDDLE_POINT:22479354 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 182 222 1 935 307 XLS3_Contig1767 AT5G08280 hydroxymethylbilane synthase / porphobilinogen deaminase, chloroplast / pre-uroporphyrinogen synthase, identical to SP|Q43316 [ 15241573 NP_196445.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2663764 CHROM_POS_END:2665597 } -=| MIDDLE_POINT:2664680 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 262 335 1 1097 382 XLS3_Contig1768 AT3G16850 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein, weak similarity to SP|P05117 Polygalacturonase 2A precursor (EC 3.2.1.15) (Pectinase) {Lycopersicon esculentum} [ 15228881 NP_188308.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5748698 CHROM_POS_END:5750987 } -=| MIDDLE_POINT:5749842 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 182 281 1 929 455 XLS3_Contig1769 AT2G37590 Dof-type zinc finger domain-containing protein [ AT2G37590 15224320 NP_181295.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15776370 CHROM_POS_END:15777575 } -=| MIDDLE_POINT:15776972 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.52 50 123 245 1 939 330 XLS3_Contig1770 AT3G57650 acyl-CoA:1-acylglycerol-3-phosphate acyltransferase, putative, similar to acyl-CoA:1-acylglycerol-3-phosphate acyltransferase GI:4583544 from (Brassica napus) [ 18410774 NP_567052.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21360728 CHROM_POS_END:21363816 } -=| MIDDLE_POINT:21362272 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 228 306 1 1052 389 XLS3_Contig1771 no_hits_found 0 0 XLS3_Contig1772 AT2G45670 calcineurin B subunit-related, contains Pfam PF00036: EF hand domain and Prosite PS00018: EF-hand calcium-binding domain [ 18406854 NP_566051.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:18822144 CHROM_POS_END:18825456 } -=| MIDDLE_POINT:18823800 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 292 429 1 1537 539 XLS3_Contig1773 AT4G15560 1-deoxy-D-xylulose 5-phosphate synthase, putative / 1-deoxyxylulose-5-phosphate synthase, putative / DXP-synthase, putative (DEF) (CLA1), identical to SP|Q38854 Probable 1-deoxy-D-xylulose 5-phosphate synthase, chloroplast precursor (EC 4.1.3.37) (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS). (Mouse-ear cress) {Arabidopsis thaliana}, DEF (deficient in photosynthesis) protein (Arabidopsis thaliana) GI:1399261 [ 15234642 NP_193291.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8884216 CHROM_POS_END:8887252 } -=| MIDDLE_POINT:8885734 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 275 320 1 973 717 XLS3_Contig1774 AT1G33540 serine carboxypeptidase S10 family protein, similar to GI:8777303 from (Arabidopsis thaliana) (DNA Res. 7 (1), 31-63 (2000)) [ 15217581 NP_174619.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12162329 CHROM_POS_END:12164680 } -=| MIDDLE_POINT:12163504 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.97 44 180 402 1 1386 446 XLS3_Contig1775 AT2G31130 expressed protein [ AT2G31130 18402569 NP_565715.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13270906 CHROM_POS_END:13272611 } -=| MIDDLE_POINT:13271758 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.23 68 51 74 1 1158 419 XLS3_Contig1776 AT1G76490 similar to 3-hydroxy-3-methylglutaryl-CoA reductase 2 / HMG-CoA reductase 2 (HMGR2) [Arabidopsis thaliana] (TAIR:At2g17370.1) [ 79382641 NP_177775.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:28700695 CHROM_POS_END:28703100 } -=| MIDDLE_POINT:28701897 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.7 54 137 252 1 954 642 XLS3_Contig1777 AT1G75780 tubulin beta-1 chain (TUB1), nearly identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis thaliana} [ 15222873 NP_177706.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:28455039 CHROM_POS_END:28457263 } -=| MIDDLE_POINT:28456151 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 94 398 423 1 1399 447 XLS3_Contig1778 AT3G02150 TCP family transcription factor, putative, similar to transcription factor PCF6 (Oryza sativa (japonica cultivar-group)) GI:20975255 [ 30678498 NP_850501.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:391529 CHROM_POS_END:392596 } -=| MIDDLE_POINT:392062 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.38 60 82 136 1 954 355 XLS3_Contig1779 AT2G02170 remorin family protein, contains Pfam domain, PF03763: Remorin, C-terminal region [ 18395321 NP_027421.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:556594 CHROM_POS_END:558609 } -=| MIDDLE_POINT:557601 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.51 43 140 319 1 1106 486 XLS3_Contig1780 AT3G22960 pyruvate kinase, putative, similar to pyruvate kinase isozyme A, chloroplast precursor (Ricinus communis) SWISS-PROT:Q43117 [ 18403597 NP_566720.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8139376 CHROM_POS_END:8141778 } -=| MIDDLE_POINT:8140577 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.88 62 158 253 1 946 596 XLS3_Contig1781 AT3G51130 expressed protein, contains Pfam PF03676: Uncharacterised protein family (UPF0183) [ 18409274 NP_566945.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19005198 CHROM_POS_END:19008159 } -=| MIDDLE_POINT:19006678 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 225 263 1 897 410 XLS3_Contig1782 AT3G48270 cytochrome P450 71A26, putative (CYP71A26), identical to Cytochrome P450 71A26 (SP:Q9STK7) {Arabidopsis thaliana} [ 22331672 NP_680106.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17887556 CHROM_POS_END:17889158 } -=| MIDDLE_POINT:17888357 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.92 47 170 361 1 1146 489 XLS3_Contig1783 no_hits_found 0 0 XLS3_Contig1784 AT1G62280 C4-dicarboxylate transporter/malic acid transport family protein, contains Pfam profile PF03595: C4-dicarboxylate transporter/malic acid transport protein [ 42562884 NP_176418.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:23010974 CHROM_POS_END:23012205 } -=| MIDDLE_POINT:23011589 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.83 55 153 277 1 1148 385 XLS3_Contig1785 AT1G08040 expressed protein, contains Pfam profile PF05212: Protein of unknown function (DUF707) [ 18390845 NP_563805.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2495504 CHROM_POS_END:2497970 } -=| MIDDLE_POINT:2496737 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.84 61 139 226 1 869 382 XLS3_Contig1786 AT3G17970 chloroplast outer membrane translocon subunit, putative, similar to Toc64 (Pisum sativum) GI:7453538 [ 30684733 NP_188424.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6148036 CHROM_POS_END:6151800 } -=| MIDDLE_POINT:6149918 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 216 319 1 1120 589 XLS3_Contig1787 AT1G10240 far-red impaired responsive protein, putative, similar to far-red impaired response protein FAR1 (Arabidopsis thaliana) gi|5764395|gb|AAD51282 [ 18391130 NP_563865.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3356837 CHROM_POS_END:3359273 } -=| MIDDLE_POINT:3358055 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.83 57 144 252 1 923 680 XLS3_Contig1788 AT1G08510 acyl-(acyl carrier protein) thioesterase / acyl-ACP thioesterase / oleoyl-(acyl-carrier protein) hydrolase / S-acyl fatty acid synthase thioesterase, identical to acyl-(acyl carrier protein) thioesterase (Arabidopsis thaliana) GI:804948 [ 15223236 NP_172327.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2691549 CHROM_POS_END:2693412 } -=| MIDDLE_POINT:2692480 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.68 67 142 209 1 979 412 XLS3_Contig1789 AT1G15520 ABC transporter family protein, similar to ABC1 protein GI:14331118 from (Nicotiana plumbaginifolia) [ 15218218 NP_173005.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5331988 CHROM_POS_END:5338170 } -=| MIDDLE_POINT:5335079 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 61 183 296 1 1403 1423 XLS3_Contig1790 AT5G19780 tubulin alpha-3/alpha-5 chain (TUA5), nearly identical to SP|P20363 Tubulin alpha-3/alpha-5 chain {Arabidopsis thaliana} [ 15241179 NP_197479.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6687214 CHROM_POS_END:6688928 } -=| MIDDLE_POINT:6688071 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 268 347 1 1529 450 XLS3_Contig1791 AT4G31990 similar to aspartate aminotransferase, cytoplasmic isozyme 1 / transaminase A (ASP2) [Arabidopsis thaliana] (TAIR:At5g19550.1) [ 79326077 NP_001031767.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:15470882 CHROM_POS_END:15473527 } -=| MIDDLE_POINT:15472204 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 207 268 1 904 462 XLS3_Contig1792 AT1G01910 anion-transporting ATPase, putative, similar to SP|O43681 Arsenical pump-driving ATPase (EC 3.6.3.16) (Arsenite-translocating ATPase) (Arsenical resistance ATPase) (Arsenite-transporting ATPase) (ARSA) (ASNA-I) {Homo sapiens} [ 18378897 NP_563640.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:313595 CHROM_POS_END:315831 } -=| MIDDLE_POINT:314713 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 191 230 1 847 353 XLS3_Contig1793 AT3G14920 expressed protein [ AT3G14920 15232438 NP_188110.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5018282 CHROM_POS_END:5020111 } -=| MIDDLE_POINT:5019196 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 61 283 458 1 1586 609 XLS3_Contig1794 AT1G30540 ATPase, BadF/BadG/BcrA/BcrD-type family, contains Pfam PF01869: BadF/BadG/BcrA/BcrD ATPase family [ 18397556 NP_564358.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:10816933 CHROM_POS_END:10819154 } -=| MIDDLE_POINT:10818043 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 190 271 1 1052 351 XLS3_Contig1795 AT4G02930 elongation factor Tu, putative / EF-Tu, putative, similar to mitochondrial elongation factor Tu (Arabidopsis thaliana) gi|1149571|emb|CAA61511 [ 15236220 NP_192202.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1295751 CHROM_POS_END:1298354 } -=| MIDDLE_POINT:1297052 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 224 284 1 951 454 XLS3_Contig1796 AT1G25550 myb family transcription factor, contains Pfam domain, PF00249: Myb-like DNA-binding domain [ 18395724 NP_564236.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8976631 CHROM_POS_END:8977929 } -=| MIDDLE_POINT:8977280 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.79 53 159 295 1 1116 344 XLS3_Contig1797 AT2G20790 expressed protein, weak similarity to clathrin-adaptor medium chain apm 3 (GI:12000359) (Dictyostelium discoideum) [ 30681135 NP_850004.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:8957243 CHROM_POS_END:8959694 } -=| MIDDLE_POINT:8958468 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.81 59 156 263 1 922 613 XLS3_Contig1798 AT1G09460 glucan endo-1,3-beta-glucosidase-related, similar to glucan endo-1,3-beta-glucosidase precursor SP:P52409 from (Triticum aestivum) [ 22329437 NP_172417.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3053903 CHROM_POS_END:3055092 } -=| MIDDLE_POINT:3054497 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.51 49 119 241 1 1000 330 XLS3_Contig1799 AT5G57930 expressed protein [ AT5G57930 30696972 NP_200601.3 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:23471916 CHROM_POS_END:23473580 } -=| MIDDLE_POINT:23472748 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 273 393 1 1633 443 XLS3_Contig1800 AT2G43750 cysteine synthase, chloroplast / O-acetylserine (thiol)-lyase / O-acetylserine sulfhydrylase / cpACS1 (OASB), identical to SP|P47999 Cysteine synthase, chloroplast precursor (EC 4.2.99.8) (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (cpACS1) {Arabidopsis thaliana} [ 15224351 NP_181903.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18136681 CHROM_POS_END:18139399 } -=| MIDDLE_POINT:18138040 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 207 266 1 909 392 XLS3_Contig1801 AT3G11320 similar to phosphate translocator-related [Arabidopsis thaliana] (TAIR:At5g05820.1) [ 79397740 NP_187740.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3547023 CHROM_POS_END:3548545 } -=| MIDDLE_POINT:3547784 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 86 218 252 1 948 308 XLS3_Contig1802 AT2G27600 AAA-type ATPase family protein / vacuolar sorting protein-related, similar to SP|P46467 SKD1 protein (Vacuolar sorting protein 4b) {Mus musculus} [ 15226199 NP_180328.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11788303 CHROM_POS_END:11790807 } -=| MIDDLE_POINT:11789555 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 88 377 425 1 1463 435 XLS3_Contig1803 AT3G20000 porin family protein, low similarity to haymaker protein (Mus musculus) GI:17834089, mitochondrial outer membrane protein MOM35 (Mus musculus) GI:6650562 [ 15231008 NP_188634.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6967691 CHROM_POS_END:6970253 } -=| MIDDLE_POINT:6968972 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 196 277 1 932 309 XLS3_Contig1804 AT5G07050 nodulin MtN21 family protein, similar to MtN21 GI:2598575 (root nodule development) from (Medicago truncatula) [ 42567710 NP_196322.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2191534 CHROM_POS_END:2193354 } -=| MIDDLE_POINT:2192444 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 196 267 1 947 381 XLS3_Contig1805 AT3G55480 adaptin family protein, similar to AP-3 complex beta3A subunit, Homo sapiens, SP|O00203 [ 18410287 NP_567022.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:20577350 CHROM_POS_END:20581607 } -=| MIDDLE_POINT:20579478 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 44 214 486 1 1403 987 XLS3_Contig1806 AT1G33540 serine carboxypeptidase S10 family protein, similar to GI:8777303 from (Arabidopsis thaliana) (DNA Res. 7 (1), 31-63 (2000)) [ 15217581 NP_174619.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12162329 CHROM_POS_END:12164680 } -=| MIDDLE_POINT:12163504 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.75 50 136 269 1 947 446 XLS3_Contig1807 AT5G58230 WD-40 repeat protein (MSI1), contains 6 WD-40 repeats (PF0400) [ 15237140 NP_200631.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:23573338 CHROM_POS_END:23575220 } -=| MIDDLE_POINT:23574279 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 89 257 287 1 1013 424 XLS3_Contig1808 AT3G56310 alpha-galactosidase, putative / melibiase, putative [ AT3G56310 22331822 NP_191190.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:20893865 CHROM_POS_END:20896724 } -=| MIDDLE_POINT:20895294 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 200 278 1 910 437 XLS3_Contig1809 AT4G12300 cytochrome P450 family protein, flavonoid 3',5'-hydroxylase - Campanula medium, PID:d1003951 [ 15234514 NP_192967.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7308011 CHROM_POS_END:7309687 } -=| MIDDLE_POINT:7308849 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.76 52 135 255 1 881 516 XLS3_Contig1810 AT5G43330 malate dehydrogenase, cytosolic, putative, strong similarity to cytosolic malate dehydrogenase (EC 1.1.1.37) SP|O24047 {Mesembryanthemum crystallinum}, SP|O48905 {Medicago sativa}, (Prunus persica) GI:15982948 [ 15239843 NP_199147.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17407780 CHROM_POS_END:17409677 } -=| MIDDLE_POINT:17408728 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 91 303 332 1 1327 332 XLS3_Contig1811 AT1G19260 hAT dimerisation domain-containing protein [ AT1G19260 15221982 NP_173360.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6657251 CHROM_POS_END:6659560 } -=| MIDDLE_POINT:6658405 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.51 53 91 170 1 997 769 XLS3_Contig1812 AT3G44540 similar to acyl CoA reductase, putative / male-sterility protein, putative [Arabidopsis thaliana] (TAIR:At5g22500.1) [ 79432534 NP_190040.3 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:16135066 CHROM_POS_END:16138756 } -=| MIDDLE_POINT:16136911 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 56 204 358 1 1293 493 XLS3_Contig1813 AT5G66460 (1-4)-beta-mannan endohydrolase, putative, similar to (1-4)-beta-mannan endohydrolase (Coffea arabica) GI:10178872 [ 15239973 NP_201447.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26556137 CHROM_POS_END:26558063 } -=| MIDDLE_POINT:26557100 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.99 57 159 275 1 917 431 XLS3_Contig1814 AT4G28770 expressed protein [ AT4G28770 15235419 NP_194606.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14212183 CHROM_POS_END:14213524 } -=| MIDDLE_POINT:14212853 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.6 49 128 259 1 918 281 XLS3_Contig1815 AT4G28400 protein phosphatase 2C, putative / PP2C, putative, protein phosphatase 2C-fission yeast, PIR2:S54297 [ 18417190 NP_567808.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:14048505 CHROM_POS_END:14050124 } -=| MIDDLE_POINT:14049314 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.71 62 134 214 1 854 283 XLS3_Contig1816 AT4G30935 WRKY family transcription factor, contains Pfam profile: PF03106 WRKY DNA -binding domain [ 42567286 NP_567862.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15051922 CHROM_POS_END:15053914 } -=| MIDDLE_POINT:15052918 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.22 33 74 220 1 928 466 XLS3_Contig1817 AT4G05460 F-box family protein (FBL20), contains similarity to N7 protein GI:3273101 from (Medicago truncatula) [ 18412947 NP_567294.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2761103 CHROM_POS_END:2762397 } -=| MIDDLE_POINT:2761750 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.44 43 99 229 1 905 302 XLS3_Contig1818 AT1G49520 SWIB complex BAF60b domain-containing protein, contains Pfam profile PF02201: BAF60b domain of the SWIB complex [ 42562626 NP_175375.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18333404 CHROM_POS_END:18335359 } -=| MIDDLE_POINT:18334381 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.53 52 104 199 1 913 372 XLS3_Contig1819 AT5G56610 dual specificity protein phosphatase family protein, contains Pfam profile: PF00782 dual specificity phosphatase, catalytic domain [ 42568578 NP_200472.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:22933964 CHROM_POS_END:22935363 } -=| MIDDLE_POINT:22934663 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.77 72 141 194 1 1489 228 XLS3_Contig1820 AT3G14350 leucine-rich repeat transmembrane protein kinase, putative, similar to leucine-rich repeat transmembrane protein kinase 1 GB:AAC27894 from (Zea mays) [ 30683104 NP_188052.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4783122 CHROM_POS_END:4787006 } -=| MIDDLE_POINT:4785064 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 62 221 352 1 1045 717 XLS3_Contig1821 AT4G01870 tolB protein-related, contains weak similarity to TolB protein precursor (Swiss-Prot:P44677) (Haemophilus influenzae) [ 15234357 NP_192096.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:808473 CHROM_POS_END:810431 } -=| MIDDLE_POINT:809452 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.92 55 168 303 1 907 652 XLS3_Contig1822 AT4G34850 chalcone and stilbene synthase family protein, similar to chalcone synthase homolog PrChS1, Pinus radiata, gb:U90341 [ 18418528 NP_567971.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16608354 CHROM_POS_END:16609725 } -=| MIDDLE_POINT:16609039 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 227 288 1 937 392 XLS3_Contig1823 AT1G65590 glycosyl hydrolase family 20 protein, contains Pfam PF00728: Glycosyl hydrolase family 20, catalytic domain [ 30697215 NP_176737.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:24389659 CHROM_POS_END:24394652 } -=| MIDDLE_POINT:24392155 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.9 62 157 250 1 910 535 XLS3_Contig1824 AT1G13570 F-box family protein, contains F-box domain Pfam:PF00646 [ 15222887 NP_172814.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4642525 CHROM_POS_END:4643927 } -=| MIDDLE_POINT:4643226 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.45 48 97 202 1 888 416 XLS3_Contig1825 AT5G59800 methyl-CpG-binding domain-containing protein, contains Pfam profile PF01429: Methyl-CpG binding domain [ 15238536 NP_200788.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:24111978 CHROM_POS_END:24113648 } -=| MIDDLE_POINT:24112813 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.14 32 48 148 1 920 306 XLS3_Contig1826 AT3G53000 F-box family protein / SKP1 interacting partner 3-related, low similarity to SKP1 interacting partner 3 (Arabidopsis thaliana) GI:10716951 [ 15231726 NP_190868.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19665256 CHROM_POS_END:19666779 } -=| MIDDLE_POINT:19666017 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 187 259 1 923 300 XLS3_Contig1827 AT5G11450 oxygen-evolving complex-related, 23 kDa polypeptide of water-oxidizing complex of photosystem II, Nicotiana tabacum, EMBL:NT23WOP2B [ 22326731 NP_196706.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3654476 CHROM_POS_END:3656358 } -=| MIDDLE_POINT:3655417 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.95 59 170 288 1 934 297 XLS3_Contig1828 AT2G28600 expressed protein [ AT2G28600 15226904 NP_180427.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12258922 CHROM_POS_END:12261749 } -=| MIDDLE_POINT:12260335 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.55 45 129 286 1 937 502 XLS3_Contig1829 AT5G61530 small G protein family protein / RhoGAP family protein, contains Pfam domain, PF00620: RhoGAP domain [ 18424478 NP_568935.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:24759856 CHROM_POS_END:24761812 } -=| MIDDLE_POINT:24760834 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 182 259 1 899 376 XLS3_Contig1830 AT4G19120 early-responsive to dehydration stress protein (ERD3), identical to ERD3 protein (Arabidopsis thaliana) GI:15320410 [ 18415244 NP_567575.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:10460676 CHROM_POS_END:10463045 } -=| MIDDLE_POINT:10461860 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 181 235 1 932 600 XLS3_Contig1831 AT4G36680 pentatricopeptide (PPR) repeat-containing protein, low similarity to fertility restorer (Petunia x hybrida) GI:22128587 [ 15234493 NP_195386.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17292483 CHROM_POS_END:17293721 } -=| MIDDLE_POINT:17293102 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.78 51 138 266 1 914 412 XLS3_Contig1832 AT5G09660 malate dehydrogenase, glyoxysomal, identical to SP|Q9ZP05 [ AT5G09660 15242466 NP_196528.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2993646 CHROM_POS_END:2995552 } -=| MIDDLE_POINT:2994599 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 198 236 1 1025 354 XLS3_Contig1833 AT1G48635 peroxin-3 family protein, contains Pfam domain, PF04882: Peroxin-3 [ 22330115 NP_683410.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17987619 CHROM_POS_END:17989634 } -=| MIDDLE_POINT:17988626 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 55 171 310 1 1637 364 XLS3_Contig1834 AT1G71070 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein, similar to glucosaminyl (N-acetyl) transferase GB:4758422 from (Homo sapiens) [ 18409754 NP_565009.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26811102 CHROM_POS_END:26812814 } -=| MIDDLE_POINT:26811958 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.85 66 158 239 1 1060 395 XLS3_Contig1835 AT1G76660 expressed protein [ AT1G76660 15223134 NP_177792.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:28774051 CHROM_POS_END:28775930 } -=| MIDDLE_POINT:28774990 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.77 72 147 204 1 1005 431 XLS3_Contig1836 AT4G27390 expressed protein, hypothetical protein, Synechocystis sp., PIR2:S77328 [ 18416979 NP_567772.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13703423 CHROM_POS_END:13704661 } -=| MIDDLE_POINT:13704042 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.57 64 96 148 1 1089 235 XLS3_Contig1837 AT1G17550 protein phosphatase 2C-related / PP2C-related, similar to protein phosphatase 2C GI:3242077 from (Arabidopsis thaliana) [ 30685388 NP_173199.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6034910 CHROM_POS_END:6036932 } -=| MIDDLE_POINT:6035921 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.66 40 148 365 1 1640 511 XLS3_Contig1838 AT1G75220 integral membrane protein, putative, strong similarity to integral membrane protein GI:1209756 from (Beta vulgaris) [ 15222158 NP_177658.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:28233073 CHROM_POS_END:28236267 } -=| MIDDLE_POINT:28234670 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 399 489 1 1885 487 XLS3_Contig1839 AT4G03260 leucine-rich repeat family protein, contains leucine rich repeat (LRR) domains, Pfam:PF00560 [ 30679417 NP_192235.3 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1429092 CHROM_POS_END:1431431 } -=| MIDDLE_POINT:1430261 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 46 260 565 1 1509 677 XLS3_Contig1840 AT4G17240 expressed protein [ AT4G17240 22328742 NP_193457.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9666810 CHROM_POS_END:9667874 } -=| MIDDLE_POINT:9667342 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.28 62 64 103 1 936 200 XLS3_Contig1841 AT5G61970 signal recognition particle-related / SRP-related, low similarity to Signal recognition particle 68 kDa protein (SRP68) from Homo sapiens SP|Q9UHB9, Canis familiaris SP|Q00004 [ 18424534 NP_568947.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:24906146 CHROM_POS_END:24910305 } -=| MIDDLE_POINT:24908225 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 229 288 1 931 605 XLS3_Contig1842 AT4G30210 NADPH-cytochrome p450 reductase, putative / NADPH-ferrihemoprotein reductase, putative, similar to NADPH-cytochrome P450 oxydoreductase from (Populus balsamifera subsp. trichocarpa x Populus deltoides) GI:13183564, GI:13183566 [ 30688594 NP_849472.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:14796906 CHROM_POS_END:14800540 } -=| MIDDLE_POINT:14798723 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.89 64 162 250 1 910 726 XLS3_Contig1843 AT5G50000 protein kinase, putative, similar to protein kinase ATMRK1 (Arabidopsis thaliana) gi|2351097|dbj|BAA22079 [ 15240597 NP_199811.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20360064 CHROM_POS_END:20362259 } -=| MIDDLE_POINT:20361161 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 218 277 1 930 385 XLS3_Contig1844 AT5G01820 CBL-interacting protein kinase 14 (CIPK14), identical to CBL-interacting protein kinase 14 (Arabidopsis thaliana) gi|13249127|gb|AAK16689 [ 15241067 NP_195802.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:313420 CHROM_POS_END:314748 } -=| MIDDLE_POINT:314084 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 63 261 410 1 1349 442 XLS3_Contig1845 AT3G59780 expressed protein [ AT3G59780 42566070 NP_191537.3 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22098322 CHROM_POS_END:22101301 } -=| MIDDLE_POINT:22099811 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.28 35 72 205 1 1043 610 XLS3_Contig1846 AT2G25480 expressed protein [ AT2G25480 15224733 NP_180118.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10850527 CHROM_POS_END:10852421 } -=| MIDDLE_POINT:10851474 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.35 48 83 170 1 1011 404 XLS3_Contig1847 AT2G40490 uroporphyrinogen decarboxylase, putative / UPD, putative, similar to uroporphyrinogen decarboxylase (chloroplast) from Nicotiana tabacum (SP|Q42967), Hordeum vulgare (SP|Q42855), Zea mays (SP|O81220) [ 15226690 NP_181581.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16920039 CHROM_POS_END:16922066 } -=| MIDDLE_POINT:16921052 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 224 294 1 992 394 XLS3_Contig1848 no_hits_found 0 0 XLS3_Contig1849 AT1G19400 expressed protein [ AT1G19400 30686353 NP_850946.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:6712213 CHROM_POS_END:6713667 } -=| MIDDLE_POINT:6712940 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.64 54 134 246 1 966 303 XLS3_Contig1850 AT3G23610 dual specificity protein phosphatase (DsPTP1), identical to DsPTP1 protein GI:4150963 from (Arabidopsis thaliana) [ 15229482 NP_189003.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8478287 CHROM_POS_END:8479528 } -=| MIDDLE_POINT:8478907 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.15 34 50 145 1 833 198 XLS3_Contig1851 AT1G67570 expressed protein [ AT1G67570 18408800 NP_564899.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:25328981 CHROM_POS_END:25330601 } -=| MIDDLE_POINT:25329791 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.28 43 71 165 1 926 456 XLS3_Contig1852 AT3G46780 expressed protein [ AT3G46780 42565672 NP_566886.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17239751 CHROM_POS_END:17242006 } -=| MIDDLE_POINT:17240878 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 59 213 361 1 1171 510 XLS3_Contig1853 AT2G46520 cellular apoptosis susceptibility protein, putative [ AT2G46520 15226001 NP_182175.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19103939 CHROM_POS_END:19106857 } -=| MIDDLE_POINT:19105398 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 188 293 1 924 972 XLS3_Contig1854 AT5G25757 expressed protein [ AT5G25757 22327070 NP_680223.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8965518 CHROM_POS_END:8967463 } -=| MIDDLE_POINT:8966490 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 424 513 1 1602 514 XLS3_Contig1855 AT4G27290 S-locus protein kinase, putative, similar to S-receptor kinase gi|392557|gb|AAA62232 [ 15237045 NP_194459.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:13666287 CHROM_POS_END:13669208 } -=| MIDDLE_POINT:13667747 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.73 46 139 299 1 919 772 XLS3_Contig1856 AT2G25110 MIR domain-containing protein, similar to SP|Q99470 Stromal cell-derived factor 2 precursor (SDF-2) {Homo sapiens} [ 18400721 NP_565585.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10691507 CHROM_POS_END:10692917 } -=| MIDDLE_POINT:10692212 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.87 75 147 194 1 900 218 XLS3_Contig1857 AT1G09020 protein kinase, putative, similar to protein kinase AKINbetagamma-2 (Zea mays) GI:11139548, AKINbetagamma-1 (Zea mays) GI:11139546 [ 18390971 NP_563834.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2900152 CHROM_POS_END:2904215 } -=| MIDDLE_POINT:2902183 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 196 298 1 1450 487 XLS3_Contig1858 AT5G50400 calcineurin-like phosphoesterase family protein, contains Pfam profile: PF00149 calcineurin-like phosphoesterase [ 42568444 NP_199851.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20540801 CHROM_POS_END:20543457 } -=| MIDDLE_POINT:20542129 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.99 62 174 280 1 914 611 XLS3_Contig1859 AT5G39080 transferase family protein, similar to anthocyanin 5-aromatic acyltransferase from Gentiana triflora GI:4185599, malonyl CoA:anthocyanin 5-O-glucoside-6'''-O-malonyltransferase from Perilla frutescens GI:17980232, Salvia splendens GI:17980234 [ 15241631 NP_198724.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15658909 CHROM_POS_END:15660300 } -=| MIDDLE_POINT:15659604 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.29 34 65 188 1 966 463 XLS3_Contig1860 AT5G24910 cytochrome P450 family protein, similar to Cytochrome P450 72A1 (SP:Q05047) (Catharanthus roseus) [ 18420859 NP_568463.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8567677 CHROM_POS_END:8570263 } -=| MIDDLE_POINT:8568970 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 60 248 409 1 1330 532 XLS3_Contig1861 AT4G16170 expressed protein [ AT4G16170 15234843 NP_193352.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9165380 CHROM_POS_END:9167452 } -=| MIDDLE_POINT:9166416 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 242 315 1 2479 429 XLS3_Contig1862 AT2G20340 tyrosine decarboxylase, putative, similar to tyrosine/dopa decarboxylase (Papaver somniferum) GI:3282527, SP|Q06087 Tyrosine decarboxylase 3 (EC 4.1.1.25) {Petroselinum crispum} [ 30680963 NP_849999.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8786885 CHROM_POS_END:8789571 } -=| MIDDLE_POINT:8788228 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 212 285 1 919 490 XLS3_Contig1863 AT3G61580 delta-8 sphingolipid desaturase (SLD1), identical to delta-8 sphingolipid desaturase GI:3819710 from (Arabidopsis thaliana) [ 15233152 NP_191717.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22797228 CHROM_POS_END:22798577 } -=| MIDDLE_POINT:22797902 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 166 257 1 874 449 XLS3_Contig1864 AT3G21690 MATE efflux family protein, similar to ripening regulated protein DDTFR18 (Lycopersicon esculentum) GI:12231296 [ 15233127 NP_188806.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7638757 CHROM_POS_END:7641868 } -=| MIDDLE_POINT:7640312 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 63 292 457 1 1447 506 XLS3_Contig1865 AT5G46110 phosphate/triose-phosphate translocator, putative, identical to phosphate/triose-phosphate translocator precursor (Arabidopsis thaliana) gi|3983125|gb|AAC83815 [ 30694881 NP_851138.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:18714833 CHROM_POS_END:18717439 } -=| MIDDLE_POINT:18716136 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 228 303 1 1010 410 XLS3_Contig1866 AT3G17440 novel plant SNARE 13 (NPSN13), identical to Novel plant SNARE 13 (AtNPSN13) (SP:Q9LRP1) {Arabidopsis thaliana} [ 18401508 NP_566578.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:5969915 CHROM_POS_END:5972296 } -=| MIDDLE_POINT:5971105 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 208 248 1 1138 269 XLS3_Contig1867 AT3G13470 chaperonin, putative, similar SWISS-PROT:P21240- RuBisCO subunit binding-protein beta subunit, chloroplast precursor (60 kDa chaperonin beta subunit, CPN-60 beta) (Arabidopsis thaliana) [ 15231255 NP_187956.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4389692 CHROM_POS_END:4392631 } -=| MIDDLE_POINT:4391161 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 89 292 325 1 1203 596 XLS3_Contig1868 AT4G32570 expressed protein [ AT4G32570 18418038 NP_567898.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15716439 CHROM_POS_END:15718708 } -=| MIDDLE_POINT:15717573 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.16 35 65 185 1 893 361 XLS3_Contig1869 AT5G53340 galactosyltransferase family protein, contains Pfam profile: PF01762 galactosyltransferase [ 18423501 NP_568791.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21658271 CHROM_POS_END:21660421 } -=| MIDDLE_POINT:21659346 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.67 58 132 227 1 911 338 XLS3_Contig1870 no_hits_found 0 0 XLS3_Contig1871 AT1G62710 vacuolar processing enzyme beta / beta-VPE, identical to SP|Q39044 Vacuolar processing enzyme, beta-isozyme precursor (EC 3.4.22.-) (Beta-VPE) {Arabidopsis thaliana} [ 15221556 NP_176458.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:23227735 CHROM_POS_END:23230522 } -=| MIDDLE_POINT:23229128 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 63 257 403 1 1242 486 XLS3_Contig1872 AT5G12200 dihydropyrimidinase / DHPase / dihydropyrimidine amidohydrolase / hydantoinase (PYD2), identical to dihydropyrimidine amidohydrolase (PYD2) (Arabidopsis thaliana) GI:28194047 [ 42567801 NP_568258.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3941701 CHROM_POS_END:3944728 } -=| MIDDLE_POINT:3943214 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 199 262 1 923 531 XLS3_Contig1873 AT5G15640 mitochondrial substrate carrier family protein, contains Pfam profile: PF00153 mitochondrial carrier protein [ 18417739 NP_568317.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5087593 CHROM_POS_END:5089680 } -=| MIDDLE_POINT:5088636 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.85 75 148 196 1 1054 323 XLS3_Contig1874 AT3G53920 RNA polymerase sigma subunit SigC (sigC) / sigma factor 3 (SIG3), identical to sigma factor SigC (Arabidopsis thaliana) GI:5478585, sigma factor 3 (SIG3) (Arabidopsis thaliana) GI:2353175, plastid RNA polymerase sigma-subunit (Arabidopsis thaliana) GI:2398853 [ 15232364 NP_190960.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19972019 CHROM_POS_END:19974798 } -=| MIDDLE_POINT:19973408 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.83 53 138 257 1 1519 571 XLS3_Contig1875 AT5G24230 expressed protein [ AT5G24230 30689345 NP_197811.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8229185 CHROM_POS_END:8230844 } -=| MIDDLE_POINT:8230014 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.76 53 140 264 1 906 369 XLS3_Contig1876 AT2G43360 biotin synthase (BioB) (BIO2), identical to SP|P54967 Pfam profile PF04055: radical SAM domain protein [ 15224273 NP_181864.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18017995 CHROM_POS_END:18020206 } -=| MIDDLE_POINT:18019100 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 221 264 1 955 378 XLS3_Contig1877 AT1G31910 GHMP kinase family protein, contains TIGRFAM profile TIGR01219: phosphomevalonate kinase [ 15222502 NP_174473.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11459030 CHROM_POS_END:11461629 } -=| MIDDLE_POINT:11460329 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 219 316 1 1075 505 XLS3_Contig1878 AT4G39470 chloroplast lumen common family protein [ AT4G39470 18420460 NP_568061.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18359729 CHROM_POS_END:18361159 } -=| MIDDLE_POINT:18360444 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.48 51 98 191 1 969 341 XLS3_Contig1879 AT5G14420 copine-related, low similarity to SP|Q99829 Copine I {Homo sapiens} [ 15241400 NP_196946.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4648358 CHROM_POS_END:4650566 } -=| MIDDLE_POINT:4649462 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.69 84 75 89 1 898 468 XLS3_Contig1880 AT1G53280 DJ-1 family protein, similar to DJ-1 protein (Homo sapiens) GI:1780755 [ 18404397 NP_564626.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19868610 CHROM_POS_END:19871009 } -=| MIDDLE_POINT:19869809 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 207 298 1 1116 438 XLS3_Contig1881 AT5G67380 casein kinase II alpha chain 1, identical to casein kinase II, alpha chain 1 (CK II) (Arabidopsis thaliana) SWISS-PROT:Q08467 [ 30698301 NP_201539.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:26898382 CHROM_POS_END:26900609 } -=| MIDDLE_POINT:26899495 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 235 309 1 1043 409 XLS3_Contig1882 AT1G66330 senescence-associated family protein, similar to senescence-associated protein (GI:12836895) (Ipomoea batatas) [ 18408486 NP_564872.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:24733543 CHROM_POS_END:24735807 } -=| MIDDLE_POINT:24734675 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.61 64 128 198 1 984 417 XLS3_Contig1883 AT3G23700 S1 RNA-binding domain-containing protein, contains Pfam domain, PF00575: S1 RNA binding domain [ 18403854 NP_566737.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8531696 CHROM_POS_END:8533749 } -=| MIDDLE_POINT:8532722 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.64 52 134 255 1 904 392 XLS3_Contig1884 AT4G22840 bile acid:sodium symporter family protein, low similarity to SP|Q12908 Ileal sodium/bile acid cotransporter {Homo sapiens} [ 18416020 NP_567671.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11991647 CHROM_POS_END:11993687 } -=| MIDDLE_POINT:11992667 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.85 64 159 246 1 907 409 XLS3_Contig1885 AT5G15550 transducin family protein / WD-40 repeat family protein, similar to YTM1 - Homo sapiens, EMBL:AF242546 [ 15242326 NP_197059.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:5059054 CHROM_POS_END:5062006 } -=| MIDDLE_POINT:5060530 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 199 299 1 1076 433 XLS3_Contig1886 AT5G53670 hypothetical protein, similar to unknown protein (pir |T17429) [ 15238802 NP_200178.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21814223 CHROM_POS_END:21814957 } -=| MIDDLE_POINT:21814590 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.15 29 46 157 1 918 244 XLS3_Contig1887 AT1G14360 UDP-galactose/UDP-glucose transporter, putative, very similar to UDP-galactose/UDP-glucose transporter (GI:22651763) {Arabidopsis thaliana} [ 18394108 NP_563949.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4911357 CHROM_POS_END:4913024 } -=| MIDDLE_POINT:4912190 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 227 273 1 901 331 XLS3_Contig1888 AT3G60260 phagocytosis and cell motility protein ELMO1-related, contains weak similarity to ELMO1 (Mus musculus) gi|16118551|gb|AAL14464 [ 18411543 NP_567097.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:22285278 CHROM_POS_END:22287814 } -=| MIDDLE_POINT:22286546 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.78 85 77 90 1 989 266 XLS3_Contig1889 AT3G07080 membrane protein, contains Pfam profile: PF00892 Integral membrane protein [ 15231381 NP_187364.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2241366 CHROM_POS_END:2242940 } -=| MIDDLE_POINT:2242153 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.7 59 141 236 1 975 438 XLS3_Contig1890 AT5G47730 SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative, similar to polyphosphoinositide binding protein SEC14 homolog Ssh1p (GI:2739044) {Glycine max} [ 15238794 NP_199584.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19351818 CHROM_POS_END:19353844 } -=| MIDDLE_POINT:19352831 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 192 271 1 1044 341 XLS3_Contig1891 AT5G09900 26S proteasome regulatory subunit, putative (RPN5), p55 protein-like [ 42573323 NP_974758.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:3089463 CHROM_POS_END:3092435 } -=| MIDDLE_POINT:3090949 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 214 273 1 929 442 XLS3_Contig1892 AT1G14780 expressed protein [ AT1G14780 15223887 NP_172931.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5091015 CHROM_POS_END:5093868 } -=| MIDDLE_POINT:5092441 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.9 55 162 294 1 915 627 XLS3_Contig1893 AT3G60240 MIF4G domain-containing protein / MA3 domain-containing protein, similar to eukaryotic protein synthesis initiation factor (Homo sapiens) GI:3941724 [ 18411536 NP_567095.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22274060 CHROM_POS_END:22279270 } -=| MIDDLE_POINT:22276665 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.93 50 197 388 1 1069 1544 XLS3_Contig1894 AT3G25530 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein, low similarity to SP|P23523 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) (Tartronate semialdehyde reductase) {Escherichia coli} [ 18404556 NP_566768.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9273186 CHROM_POS_END:9274751 } -=| MIDDLE_POINT:9273968 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 181 224 1 959 289 XLS3_Contig1895 AT3G61790 seven in absentia (SINA) family protein, similar to siah-1A protein (Mus musculus) GI:297035 [ 18412133 NP_567118.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:22882949 CHROM_POS_END:22884518 } -=| MIDDLE_POINT:22883733 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 191 231 1 936 326 XLS3_Contig1896 AT5G46150 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein, similar to GI:835763 [ 18422638 NP_568657.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:18725962 CHROM_POS_END:18727651 } -=| MIDDLE_POINT:18726806 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.96 68 164 238 1 946 343 XLS3_Contig1897 AT4G35780 protein kinase family protein, similar to protein kinase (gi:170047) from Glycine max, (gi:13124865) from Arachis hypogaea [ 22329194 NP_195303.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16946734 CHROM_POS_END:16950410 } -=| MIDDLE_POINT:16948572 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.74 62 147 235 1 852 570 XLS3_Contig1898 AT1G13560 aminoalcoholphosphotransferase (AAPT1), identical to aminoalcoholphosphotransferase GI:3661593 from (Arabidopsis thaliana) [ 15222885 NP_172813.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4638831 CHROM_POS_END:4641688 } -=| MIDDLE_POINT:4640259 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 216 261 1 942 389 XLS3_Contig1899 AT2G22250 aminotransferase class I and II family protein, similar to aspartate aminotransferase from Bacillus stearothermophilus SP|Q59228, Thermus aquaticus SP|O33822 [ 18399915 NP_565529.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9465091 CHROM_POS_END:9467377 } -=| MIDDLE_POINT:9466234 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.76 76 139 182 1 846 475 XLS3_Contig1900 AT2G46530 similar to transcriptional factor B3 family protein [ AT2G46530 79324927 NP_001031548.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:19112184 CHROM_POS_END:19115101 } -=| MIDDLE_POINT:19113642 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.83 77 150 194 1 928 622 XLS3_Contig1901 AT1G77670 aminotransferase class I and II family protein, similar to kynurenine aminotransferase /glutamine transaminase K GI:1030066 (Rattus norvegicus) [ 15217440 NP_177890.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:29193937 CHROM_POS_END:29195795 } -=| MIDDLE_POINT:29194866 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 185 255 1 913 440 XLS3_Contig1902 AT3G56940 dicarboxylate diiron protein, putative (Crd1), similar to leucine-containing zipper protein At103 GP:6911864 [ 15230174 NP_191253.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21087573 CHROM_POS_END:21089248 } -=| MIDDLE_POINT:21088410 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 251 300 1 933 409 XLS3_Contig1903 AT1G52500 formamidopyrimidine-DNA glycolase family protein / mutM, putative (MMH-1), identical to mutM homologue-2 (Arabidopsis thaliana) GP:3550983 PMID:9819050 [ 18404050 NP_564608.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:19563712 CHROM_POS_END:19566524 } -=| MIDDLE_POINT:19565118 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 228 283 1 963 390 XLS3_Contig1904 AT2G47160 anion exchange family protein, contains some similarity to SWISS-PROT:P04919 anion transport protein (anion exchange protein 1) (Mouse) {Mus musculus} [ 30690607 NP_850469.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19364810 CHROM_POS_END:19367857 } -=| MIDDLE_POINT:19366333 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 84 412 486 1 1692 704 XLS3_Contig1905 AT3G06430 pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat [ 15230719 NP_187294.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1956664 CHROM_POS_END:1958246 } -=| MIDDLE_POINT:1957455 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.85 58 164 281 1 925 486 XLS3_Contig1906 no_hits_found 0 0 XLS3_Contig1907 AT3G57530 calcium-dependent protein kinase, putative / CDPK, putative, similar to calmodulin-domain protein kinase CDPK isoform 7 (Arabidopsis thaliana) gi|1399277|gb|AAB03247 [ 30694663 NP_191312.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21307875 CHROM_POS_END:21310328 } -=| MIDDLE_POINT:21309101 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 206 264 1 993 538 XLS3_Contig1908 AT3G49080 ribosomal protein S9 family protein, contains Pfam profile PF00380: ribosomal protein S9 [ 30693135 NP_190477.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18205485 CHROM_POS_END:18207642 } -=| MIDDLE_POINT:18206563 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.49 40 137 336 1 972 430 XLS3_Contig1909 AT3G26935 zinc finger (DHHC type) family protein, contains Pfam profile PF01529: DHHC zinc finger domain [ 30688566 NP_850638.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9934238 CHROM_POS_END:9936455 } -=| MIDDLE_POINT:9935346 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 209 292 1 1003 443 XLS3_Contig1910 AT1G12760 similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:At1g63170.1) [ 79342958 NP_172736.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4348726 CHROM_POS_END:4350510 } -=| MIDDLE_POINT:4349618 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.8 55 157 281 1 919 408 XLS3_Contig1911 AT5G13610 expressed protein [ AT5G13610 15240669 NP_196865.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4383076 CHROM_POS_END:4384811 } -=| MIDDLE_POINT:4383943 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 61 240 392 1 1517 402 XLS3_Contig1912 AT2G33530 serine carboxypeptidase S10 family protein, similar to Serine carboxypeptidase II chains A and B (SP:P08819) (EC 3.4.16.6) (Triticum aestivum (Wheat) [ 30685740 NP_850212.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14204942 CHROM_POS_END:14207612 } -=| MIDDLE_POINT:14206277 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 211 284 1 1119 465 XLS3_Contig1913 AT3G04560 expressed protein [ AT3G04560 18396922 NP_566231.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1227512 CHROM_POS_END:1229344 } -=| MIDDLE_POINT:1228428 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.68 52 146 280 1 917 417 XLS3_Contig1914 AT1G29790 expressed protein [ AT1G29790 22329857 NP_174272.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10430010 CHROM_POS_END:10431146 } -=| MIDDLE_POINT:10430578 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.89 60 173 288 1 932 378 XLS3_Contig1915 AT5G48020 expressed protein [ AT5G48020 18422862 NP_568689.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19480114 CHROM_POS_END:19482016 } -=| MIDDLE_POINT:19481065 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 268 352 1 1104 355 XLS3_Contig1916 AT3G15390 expressed protein, low similarity to PRLI-interacting factor N (Arabidopsis thaliana) GI:11139276 [ 15232574 NP_188158.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5196696 CHROM_POS_END:5199538 } -=| MIDDLE_POINT:5198117 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.33 39 86 220 1 936 468 XLS3_Contig1917 AT4G27720 expressed protein, contains Pfam PF05631: Protein of unknown function (DUF791) [ 18417054 NP_567786.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:13831209 CHROM_POS_END:13833527 } -=| MIDDLE_POINT:13832368 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 87 256 293 1 1012 460 XLS3_Contig1918 AT2G40660 tRNA-binding region domain-containing protein, similar to SP|Q12904 Multisynthetase complex auxiliary component p43 (Contains: Endothelial-monocyte activating polypeptide II (EMAP-II) (Small inducible cytokine subfamily E member 1)) {Homo sapiens} [ 18405465 NP_565938.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16973089 CHROM_POS_END:16975944 } -=| MIDDLE_POINT:16974516 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.54 47 126 267 1 900 389 XLS3_Contig1919 no_hits_found 0 0 XLS3_Contig1920 AT3G54630 expressed protein, weak similarity to retinoblastoma-associated protein HEC (Homo sapiens) GI:2501873 [ 15232555 NP_191024.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20232173 CHROM_POS_END:20233879 } -=| MIDDLE_POINT:20233026 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.69 41 149 362 1 1146 568 XLS3_Contig1921 AT5G18130 expressed protein, similar to unknown protein (gb|AAF00631.1) [ 15238744 NP_197314.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:5995636 CHROM_POS_END:5997167 } -=| MIDDLE_POINT:5996401 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.24 32 92 285 1 960 280 XLS3_Contig1922 AT1G26690 emp24/gp25L/p24 family protein, similar to SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa Transmembrane trafficking protein) {Homo sapiens} [ 18396016 NP_564256.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9224286 CHROM_POS_END:9225669 } -=| MIDDLE_POINT:9224977 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.78 61 132 214 1 991 214 XLS3_Contig1923 AT3G55430 glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative, similar to beta-1,3 glucanase GI:7414433 from (Pisum sativum) [ 15233271 NP_191103.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20560783 CHROM_POS_END:20562981 } -=| MIDDLE_POINT:20561882 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.86 52 164 310 1 934 449 XLS3_Contig1924 AT3G25560 protein kinase family protein, contains Prosite:PS00108: Serine/Threonine protein kinases active-site signature and PS00107: Protein kinases ATP-binding region signature [ 42572529 NP_974360.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9280919 CHROM_POS_END:9283797 } -=| MIDDLE_POINT:9282358 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 305 435 1 1590 636 XLS3_Contig1925 AT3G49180 transducin family protein / WD-40 repeat family protein, contains 5 WD-40 repeats (PF00400) [ 15229101 NP_190487.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18240795 CHROM_POS_END:18242859 } -=| MIDDLE_POINT:18241827 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.95 60 161 267 1 910 438 XLS3_Contig1926 AT3G09200 60S acidic ribosomal protein P0 (RPP0B), similar to putative 60S acidic ribosomal protein P0 GB:P50346 (Glycine max) [ 15232603 NP_187531.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2823370 CHROM_POS_END:2825026 } -=| MIDDLE_POINT:2824198 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 86 213 247 1 941 320 XLS3_Contig1927 AT5G03150 zinc finger (C2H2 type) family protein, contains Pfam domain, PF00096: Zinc finger, C2H2 type [ 30679912 NP_195935.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:745848 CHROM_POS_END:748677 } -=| MIDDLE_POINT:747262 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 49 221 449 1 1269 503 XLS3_Contig1928 AT5G22070 expressed protein, contains Pfam profile PF03267: Arabidopsis protein of unknown function, DUF266 [ 30688302 NP_680193.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7308258 CHROM_POS_END:7309346 } -=| MIDDLE_POINT:7308802 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.82 54 163 297 1 1010 362 XLS3_Contig1929 AT4G31940 cytochrome P450, putative, cytochrome P450 monooxygenase, Pisum sativum, PATCHX:G894153 [ 15236586 NP_194922.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15452046 CHROM_POS_END:15453972 } -=| MIDDLE_POINT:15453009 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.57 41 112 271 1 876 524 XLS3_Contig1930 AT4G36650 transcription factor IIB (TFIIB) family protein, contains Pfam domain, PF00382: Transcription factor TFIIB repeat [ 15234473 NP_195383.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17283288 CHROM_POS_END:17285532 } -=| MIDDLE_POINT:17284410 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 239 286 1 898 503 XLS3_Contig1931 AT3G06350 dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative, similar to dehydroquinate dehydratase/shikimate dehydrogenase (Nicotiana tabacum)(GI:535771), dehydroquinate dehydratase/shikimate:NADP oxidoreductase (Lycopersicon esculentum)(GI:3169883) [ 15230703 NP_187286.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1924542 CHROM_POS_END:1927707 } -=| MIDDLE_POINT:1926124 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 192 274 1 975 603 XLS3_Contig1932 AT5G42250 alcohol dehydrogenase, putative, similar to alcohol dehydrogenase ADH GI:7705214 from (Lycopersicon esculentum) [ 15238330 NP_199040.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16911315 CHROM_POS_END:16914678 } -=| MIDDLE_POINT:16912996 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 254 375 1 1344 390 XLS3_Contig1933 AT3G26935 zinc finger (DHHC type) family protein, contains Pfam profile PF01529: DHHC zinc finger domain [ 30688566 NP_850638.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9934238 CHROM_POS_END:9936455 } -=| MIDDLE_POINT:9935346 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 180 257 1 910 443 XLS3_Contig1934 AT1G19330 expressed protein [ AT1G19330 18394724 NP_564079.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6680815 CHROM_POS_END:6683281 } -=| MIDDLE_POINT:6682048 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.38 70 78 110 1 890 247 XLS3_Contig1935 AT1G78310 VQ motif-containing protein, contains PF05678: VQ motif [ AT1G78310 18411903 NP_565177.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:29468896 CHROM_POS_END:29469831 } -=| MIDDLE_POINT:29469363 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.34 50 82 162 1 917 311 XLS3_Contig1936 no_hits_found 0 0 XLS3_Contig1937 AT2G23070 casein kinase II alpha chain, putative, similar to casein kinase II, alpha chain (CK II) (Zea mays) SWISS-PROT:P28523 [ 15227778 NP_179889.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9831242 CHROM_POS_END:9833951 } -=| MIDDLE_POINT:9832596 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 224 327 1 964 432 XLS3_Contig1938 AT3G49680 branched-chain amino acid aminotransferase 3 / branched-chain amino acid transaminase 3 (BCAT3), identical to SP|Q9M401 Branched-chain amino acid aminotransferase 3, chloroplast precursor (EC 2.6.1.42) (Atbcat-3){Arabidopsis thaliana} [ 18408919 NP_566923.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18433753 CHROM_POS_END:18436458 } -=| MIDDLE_POINT:18435105 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.85 65 149 226 1 885 413 XLS3_Contig1939 AT1G60690 aldo/keto reductase family protein, contains Pfam profile PF00248: oxidoreductase, aldo/keto reductase family [ 15219786 NP_176268.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:22353557 CHROM_POS_END:22355333 } -=| MIDDLE_POINT:22354445 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 200 277 1 966 345 XLS3_Contig1940 AT1G04130 tetratricopeptide repeat (TPR)-containing protein, contains non-consensus donor splice site AT at exon 4 and acceptor splice site at exon5 [ 18379248 NP_563702.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1073464 CHROM_POS_END:1075373 } -=| MIDDLE_POINT:1074418 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 179 271 1 875 360 XLS3_Contig1941 AT4G16190 cysteine proteinase, putative, contains similarity to papain-like cysteine proteinase isoform I GI:7381219 from (Ipomoea batatas) [ 18414611 NP_567489.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9171527 CHROM_POS_END:9172892 } -=| MIDDLE_POINT:9172209 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 200 296 1 924 373 XLS3_Contig1942 AT5G66770 scarecrow transcription factor family protein [ AT5G66770 15240076 NP_201478.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:26677949 CHROM_POS_END:26679703 } -=| MIDDLE_POINT:26678826 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 53 224 415 1 1226 584 XLS3_Contig1943 AT2G26990 COP9 signalosome complex subunit 2 / CSN complex subunit 2 (CSN2), proteasome, COP9-complex and eIF3-domain protein [ 18401293 NP_565632.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11526762 CHROM_POS_END:11529490 } -=| MIDDLE_POINT:11528126 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 89 235 262 1 899 439 XLS3_Contig1944 AT4G38260 expressed protein, contains Pfam PF05742: Protein of unknown function (DUF833) [ 18420207 NP_568038.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17937071 CHROM_POS_END:17938204 } -=| MIDDLE_POINT:17937637 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.79 55 145 262 1 1403 275 XLS3_Contig1945 AT3G15180 proteasome-related, similar to 26S proteasome non-ATPase regulatory subunit 5 (26S proteasome subunit S5B) (26S protease subunit S5 basic) (Swiss-Prot:Q16401) (Homo sapiens) [ 18400660 NP_566503.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5111959 CHROM_POS_END:5115810 } -=| MIDDLE_POINT:5113884 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.75 52 144 274 1 902 519 XLS3_Contig1946 AT5G26850 expressed protein [ AT5G26850 30690432 NP_198037.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9445953 CHROM_POS_END:9450587 } -=| MIDDLE_POINT:9448270 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 43 239 549 1 1715 919 XLS3_Contig1947 AT1G02205 CER1 protein, identical to maize gl1 homolog (glossy1 locus) GI:1209703 and CER1 GI:1199467 from (Arabidopsis thaliana) [ 30678265 NP_171723.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:418818 CHROM_POS_END:422154 } -=| MIDDLE_POINT:420486 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 214 295 1 916 625 XLS3_Contig1948 AT1G52540 protein kinase, putative, contains protein kinase domain, Pfam:PF00069 [ 30695267 NP_564609.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19573967 CHROM_POS_END:19575553 } -=| MIDDLE_POINT:19574760 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.78 74 135 182 1 908 350 XLS3_Contig1949 AT1G53750 26S proteasome AAA-ATPase subunit (RPT1a), similar to 26S proteasome ATPase subunit GI:1395190 from (Spinacia oleracea) [ 15220930 NP_175778.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20069589 CHROM_POS_END:20071992 } -=| MIDDLE_POINT:20070790 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 92 274 295 1 1019 426 XLS3_Contig1950 AT5G44680 methyladenine glycosylase family protein, similar to SP|P05100 DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I, constitutive) {Escherichia coli} [ 15241554 NP_199281.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18041688 CHROM_POS_END:18043120 } -=| MIDDLE_POINT:18042404 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.49 43 134 306 1 994 353 XLS3_Contig1951 AT4G18550 lipase class 3 family protein, similar to lipase (Dianthus caryophyllus) GI:4103627 [ 15233922 NP_193590.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:10225017 CHROM_POS_END:10226873 } -=| MIDDLE_POINT:10225945 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.75 46 135 290 1 895 419 XLS3_Contig1952 AT1G22370 UDP-glucoronosyl/UDP-glucosyl transferase family protein, glycosyltransferase family [ 42571589 NP_973885.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7898105 CHROM_POS_END:7899868 } -=| MIDDLE_POINT:7898986 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.56 54 90 164 1 972 479 XLS3_Contig1953 AT1G05270 TraB family protein, contains Pfam domain PF01963: TraB family [ 30679206 NP_172019.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1531805 CHROM_POS_END:1534304 } -=| MIDDLE_POINT:1533054 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.66 53 134 249 1 909 371 XLS3_Contig1954 AT2G27920 serine carboxypeptidase S10 family protein, similar to retinoid-inducible serine carboxypeptidase precursor (GI:15146429) (Mus musculus) [ 18401564 NP_565663.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:11892854 CHROM_POS_END:11896120 } -=| MIDDLE_POINT:11894487 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 185 256 1 958 461 XLS3_Contig1955 AT4G21570 expressed protein, contains Pfam profile PF03619: Domain of unknown function [ 15234526 NP_193888.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11471138 CHROM_POS_END:11472281 } -=| MIDDLE_POINT:11471709 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 185 256 1 1223 294 XLS3_Contig1956 AT4G14096 F-box family protein, contains F-box domain Pfam:PF00646 [ 18414140 NP_567421.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8124601 CHROM_POS_END:8126197 } -=| MIDDLE_POINT:8125399 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.27 34 88 253 1 979 468 XLS3_Contig1957 AT1G48380 root hair initiation protein root hairless 1 (RHL1) [ AT1G48380 18402164 NP_564526.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17881305 CHROM_POS_END:17882871 } -=| MIDDLE_POINT:17882088 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.74 50 142 284 1 905 355 XLS3_Contig1958 AT3G09220 laccase family protein / diphenol oxidase family protein, similar to laccase (Pinus taeda)(GI:13661201), laccase GB:CAA74105 (Populus balsamifera subsp. trichocarpa) [ 15232607 NP_187533.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2827440 CHROM_POS_END:2830483 } -=| MIDDLE_POINT:2828961 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 179 278 1 870 567 XLS3_Contig1959 AT1G66680 S locus-linked protein, putative, similar to S locus-linked protein SLL2 (Brassica napus) GI:1518113 [ 15219724 NP_176841.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:24870015 CHROM_POS_END:24872551 } -=| MIDDLE_POINT:24871283 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 177 275 1 894 358 XLS3_Contig1960 AT5G20890 chaperonin, putative, similar to SWISS-PROT:P78371- T-complex protein 1, beta subunit (TCP-1-beta) (Homo sapiens) [ 15242093 NP_197589.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7087022 CHROM_POS_END:7089908 } -=| MIDDLE_POINT:7088465 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 89 471 527 1 1784 527 XLS3_Contig1961 AT3G24630 expressed protein [ AT3G24630 15230138 NP_189106.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8988405 CHROM_POS_END:8990744 } -=| MIDDLE_POINT:8989574 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.18 48 59 121 1 872 724 XLS3_Contig1962 AT3G16240 delta tonoplast integral protein (delta-TIP), identical to delta tonoplast integral protein (delta-TIP) (GI:9279707)(GB:U39485) (Arabidopsis thaliana) (Plant Cell 8 (4), 587-599 (1996)) [ 15233320 NP_188245.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5505540 CHROM_POS_END:5506794 } -=| MIDDLE_POINT:5506167 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 205 247 1 926 250 XLS3_Contig1963 AT1G42970 glyceraldehyde-3-phosphate dehydrogenase B, chloroplast (GAPB) / NADP-dependent glyceraldehydephosphate dehydrogenase subunit B, identical to SP|P25857 Glyceraldehyde 3-phosphate dehydrogenase B, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) {Arabidopsis thaliana} [ 15217555 NP_174996.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16129992 CHROM_POS_END:16132024 } -=| MIDDLE_POINT:16131008 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 388 454 1 1461 447 XLS3_Contig1964 AT2G38110 phospholipid/glycerol acyltransferase family protein, low similarity to SP|O87707 CicA protein {Caulobacter crescentus} [ 15224445 NP_181346.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15959894 CHROM_POS_END:15962442 } -=| MIDDLE_POINT:15961168 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 192 281 1 891 501 XLS3_Contig1965 AT2G26930 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK) (CDPMEK), identical to 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplast precursor (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl- D-erythritol kinase)(CDPMEK) (Arabidopsis thaliana) SWISS-PROT:O81014 [ 15225820 NP_180261.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11498907 CHROM_POS_END:11501307 } -=| MIDDLE_POINT:11500107 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 188 257 1 1031 383 XLS3_Contig1966 AT4G14950 expressed protein [ AT4G14950 18414346 NP_567450.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:8545513 CHROM_POS_END:8547718 } -=| MIDDLE_POINT:8546615 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 298 407 1 1549 416 XLS3_Contig1967 AT2G02160 zinc finger (CCCH-type) family protein, contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) [ 18395319 NP_027420.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:553406 CHROM_POS_END:555898 } -=| MIDDLE_POINT:554652 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.47 52 92 174 1 1034 669 XLS3_Contig1968 no_hits_found 0 0 XLS3_Contig1969 AT2G22660 similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:At4g37900.1) [ 79322736 NP_001031396.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9634817 CHROM_POS_END:9637920 } -=| MIDDLE_POINT:9636368 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 55 235 421 1 1385 819 XLS3_Contig1970 AT1G34780 protein disulfide isomerase-related, contains weak similarity to Pfam:P08003 protein disulfide isomerase A4 precursor (Protein ERp-72, ERp72) (Mus musculus) [ 18399435 NP_564452.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12748813 CHROM_POS_END:12750102 } -=| MIDDLE_POINT:12749457 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.61 55 123 221 1 967 310 XLS3_Contig1971 AT3G51390 zinc finger (DHHC type) family protein, contains Pfam profile PF01529: DHHC zinc finger domain [ 18409331 NP_566950.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19086697 CHROM_POS_END:19088945 } -=| MIDDLE_POINT:19087821 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.79 56 137 244 1 901 340 XLS3_Contig1972 AT5G10710 expressed protein [ AT5G10710 30683293 NP_850804.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:3379620 CHROM_POS_END:3382649 } -=| MIDDLE_POINT:3381134 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.87 66 156 236 1 918 312 XLS3_Contig1973 AT2G11520 protein kinase family protein, contains protein kinase domain, Pfam:PF00069 [ 18397027 NP_565351.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4626227 CHROM_POS_END:4628530 } -=| MIDDLE_POINT:4627378 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.71 48 153 313 1 972 510 XLS3_Contig1974 AT5G14020 expressed protein [ AT5G14020 30684716 NP_196906.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4523732 CHROM_POS_END:4525821 } -=| MIDDLE_POINT:4524776 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.69 51 151 296 1 1063 406 XLS3_Contig1975 AT1G50200 aminoacyl-tRNA synthetase family protein, contains Pfam profiles: PF01411 tRNA synthetases class II (A), PF02272 DHHA1 domain [ 30694735 NP_175439.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18595097 CHROM_POS_END:18601979 } -=| MIDDLE_POINT:18598538 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 272 378 1 1224 1003 XLS3_Contig1976 no_hits_found 0 0 XLS3_Contig1977 AT2G15790 peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase, identical to cyclophilin-40 (Arabidopsis thaliana) GI:13442983 [ 18397936 NP_565381.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6885226 CHROM_POS_END:6887825 } -=| MIDDLE_POINT:6886525 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 219 275 1 964 361 XLS3_Contig1978 AT5G15490 UDP-glucose 6-dehydrogenase, putative, very strong similarity to SP|Q96558 UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH) {Glycine max} [ 15242316 NP_197053.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5027875 CHROM_POS_END:5029317 } -=| MIDDLE_POINT:5028596 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 90 262 289 1 946 480 XLS3_Contig1979 AT4G24400 CBL-interacting protein kinase 8 (CIPK8), identical to CBL-interacting protein kinase 8 (Arabidopsis thaliana) GP|13249115|gb|AAK16683 [ 15233820 NP_194171.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12617389 CHROM_POS_END:12620491 } -=| MIDDLE_POINT:12618940 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 338 427 1 1645 445 XLS3_Contig1980 AT5G55050 GDSL-motif lipase/hydrolase family protein, similar to family II lipases EXL3 GI:15054386, EXL1 GI:15054382, EXL2 GI:15054384 from (Arabidopsis thaliana) [ 15240452 NP_200316.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22354971 CHROM_POS_END:22356967 } -=| MIDDLE_POINT:22355969 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.69 47 142 301 1 897 376 XLS3_Contig1981 no_hits_found 0 0 XLS3_Contig1982 AT1G80480 PRLI-interacting factor L, putative, similar to PRLI-interacting factor L (Arabidopsis thaliana) GI:11139268 [ 15220146 NP_178163.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:30263164 CHROM_POS_END:30265462 } -=| MIDDLE_POINT:30264313 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.87 57 172 299 1 942 444 XLS3_Contig1983 AT3G02720 DJ-1 family protein / protease-related, similar to Intracellular Protease (Pyrococcus horikoshii) GI:11513902 [ 15232958 NP_186921.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:586343 CHROM_POS_END:588095 } -=| MIDDLE_POINT:587219 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 287 388 1 1459 388 XLS3_Contig1984 AT2G26900 bile acid:sodium symporter family protein, low similarity to SP|Q12908 Ileal sodium/bile acid cotransporter {Homo sapiens} [ 30683305 NP_850089.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11482234 CHROM_POS_END:11484948 } -=| MIDDLE_POINT:11483591 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 223 304 1 1064 409 XLS3_Contig1985 AT1G80810 expressed protein, similar to androgen-induced prostate proliferative shutoff associated protein (GI:4559410) (Homo sapiens) [ 15220831 NP_178196.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:30370074 CHROM_POS_END:30373790 } -=| MIDDLE_POINT:30371932 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.69 39 155 390 1 1657 826 XLS3_Contig1986 AT5G46250 RNA recognition motif (RRM)-containing protein, contains similarity to RNA-binding protein [ 30694922 NP_851141.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:18772615 CHROM_POS_END:18775283 } -=| MIDDLE_POINT:18773949 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.61 47 132 280 1 952 422 XLS3_Contig1987 AT1G04080 hydroxyproline-rich glycoprotein family protein, Contains similarity to pre-mRNA processing protein PRP39 gb L29224 from S. cerevisiae. ESTs gb|R64908 and gb|T88158, gb|N38703 and gb|AA651043 come from this gene [ 18379230 NP_563700.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1051802 CHROM_POS_END:1056549 } -=| MIDDLE_POINT:1054175 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 272 415 1 1233 768 XLS3_Contig1988 no_hits_found 0 0 XLS3_Contig1989 AT1G80380 phosphoribulokinase/uridine kinase-related [ AT1G80380 30699506 NP_849912.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:30222224 CHROM_POS_END:30224676 } -=| MIDDLE_POINT:30223450 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.8 55 162 294 1 882 456 XLS3_Contig1990 AT5G43080 cyclin, putative, similar to A-type cyclins from (Nicotiana tabacum) GI:1064931, (Catharanthus roseus) GI:2190259 [ 15239172 NP_199122.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17310455 CHROM_POS_END:17312017 } -=| MIDDLE_POINT:17311236 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.82 58 165 282 1 906 355 XLS3_Contig1991 AT2G36650 expressed protein [ AT2G36650 42569676 NP_181203.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15367073 CHROM_POS_END:15368273 } -=| MIDDLE_POINT:15367673 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.39 39 93 238 1 986 373 XLS3_Contig1992 AT3G11410 protein phosphatase 2C, putative / PP2C, putative, identical to protein phosphatase 2C (PP2C) GB:P49598 (Arabidopsis thaliana) [ 15229745 NP_187748.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3584187 CHROM_POS_END:3585655 } -=| MIDDLE_POINT:3584921 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.41 43 109 253 1 896 399 XLS3_Contig1993 AT5G51410 LUC7 N_terminus domain-containing protein, similar to cisplatin resistance-associated overexpressed protein (Homo sapiens) GI:6899846 [ 30696048 NP_851170.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:20899047 CHROM_POS_END:20900803 } -=| MIDDLE_POINT:20899925 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 191 236 1 886 334 XLS3_Contig1994 AT4G19006 26S proteasome regulatory subunit, putative (RPN9), similar to 26S proteasome subunit p40.5 (Homo sapiens) gi|3618343|dbj|BAA33214 [ 30684612 NP_680721.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:10409360 CHROM_POS_END:10411358 } -=| MIDDLE_POINT:10410359 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 320 386 1 1470 386 XLS3_Contig1995 AT3G18040 mitogen-activated protein kinase, putative / MAPK, putative (MPK9), identical to ATMPK9 (Arabidopsis thaliana) gi|7106544|dbj|BAA92223 [ 18401750 NP_566595.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:6174806 CHROM_POS_END:6178156 } -=| MIDDLE_POINT:6176481 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 84 318 377 1 1263 510 XLS3_Contig1996 AT5G52440 HCF106 protein, identical to HCF106 (Arabidopsis thaliana) GI:4894914 [ 15237156 NP_200057.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21304122 CHROM_POS_END:21305839 } -=| MIDDLE_POINT:21304980 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.46 42 118 275 1 895 260 XLS3_Contig1997 AT1G65660 zinc knuckle (CCHC-type) family protein, contains Pfam domain, PF00098: Zinc knuckle [ 18408333 NP_564859.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:24421958 CHROM_POS_END:24424894 } -=| MIDDLE_POINT:24423426 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 223 266 1 935 535 XLS3_Contig1998 AT1G51720 glutamate dehydrogenase, putative, similar to NADP-specific glutatamate dehydrogenase (NADP-GDH) SP:P28724 (Giardia lamblia (Giardia intestinalis)) [ 30695050 NP_175583.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19185409 CHROM_POS_END:19189965 } -=| MIDDLE_POINT:19187687 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 354 446 1 1655 637 XLS3_Contig1999 AT5G20070 MutT/nudix family protein, low similarity to SP|Q19427 NADH pyrophosphatase (EC 3.6.1.-) {Caenorhabditis elegans} [ 15241252 NP_197507.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6779895 CHROM_POS_END:6782310 } -=| MIDDLE_POINT:6781102 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.62 54 126 233 1 961 438 XLS3_Contig2000 AT2G36530 enolase, identical to SWISS-PROT:P25696 enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)(2-phospho-D- glycerate hydro-lyase) (Arabidopsis thaliana) [ 15227987 NP_181192.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15328160 CHROM_POS_END:15330865 } -=| MIDDLE_POINT:15329512 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 86 239 277 1 909 444 XLS3_Contig2001 AT5G26780 glycine hydroxymethyltransferase, putative / serine hydroxymethyltransferase, putative / serine/threonine aldolase, putative, strong similarity to SP|P50433 Serine hydroxymethyltransferase, mitochondrial precursor (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) {Solanum tuberosum} [ 30690404 NP_568488.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9418302 CHROM_POS_END:9421728 } -=| MIDDLE_POINT:9420015 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 223 260 1 937 533 XLS3_Contig2002 AT1G54270 eukaryotic translation initiation factor 4A-2 / eIF-4A-2, similar to eukaryotic translation initiation factor 4A GI:19696 from (Nicotiana plumbaginifolia) [ 15221761 NP_175829.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20264162 CHROM_POS_END:20265685 } -=| MIDDLE_POINT:20264923 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 88 240 271 1 941 412 XLS3_Contig2003 AT1G34340 esterase/lipase/thioesterase family protein, similar to late embryogenesis abundant protein (EMB8) GI:1350544 SP|Q40863 from (Picea glauca) [ 42562518 NP_174694.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12530914 CHROM_POS_END:12534009 } -=| MIDDLE_POINT:12532461 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.96 63 163 256 1 879 530 XLS3_Contig2004 AT1G12840 vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3), identical to vacuolar ATP synthase subunit C SP:Q9SDS7 from (Arabidopsis thaliana) [ 18391442 NP_563916.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4375582 CHROM_POS_END:4378218 } -=| MIDDLE_POINT:4376900 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 201 249 1 820 375 XLS3_Contig2005 AT5G43820 pentatricopeptide (PPR) repeat-containing protein, low similarity to fertility restorer (Petunia x hybrida) GI:22128587 [ 15239991 NP_199195.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17636175 CHROM_POS_END:17639095 } -=| MIDDLE_POINT:17637635 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.37 43 84 193 1 1269 680 XLS3_Contig2006 AT2G30200 expressed protein [ AT2G30200 18402286 NP_565697.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:12890239 CHROM_POS_END:12892559 } -=| MIDDLE_POINT:12891399 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.97 71 172 241 1 838 393 XLS3_Contig2007 AT3G22810 expressed protein, [ AT3G22810 15228863 NP_188920.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8068602 CHROM_POS_END:8071566 } -=| MIDDLE_POINT:8070084 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.92 68 186 270 1 1051 472 XLS3_Contig2008 AT3G09760 zinc finger (C3HC4-type RING finger) family protein, [ AT3G09760 18398630 NP_566355.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2992980 CHROM_POS_END:2995456 } -=| MIDDLE_POINT:2994218 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.33 46 89 193 1 888 491 XLS3_Contig2009 AT2G44640 expressed protein [ AT2G44640 18406590 NP_566021.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18424362 CHROM_POS_END:18426139 } -=| MIDDLE_POINT:18425250 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.65 44 119 268 1 898 451 XLS3_Contig2010 AT1G52920 lanthionine synthetase C-like family protein, contains Pfam domain, PF05147: Lanthionine synthetase C-like protein [ 15219126 NP_175700.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19713028 CHROM_POS_END:19714689 } -=| MIDDLE_POINT:19713858 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 259 401 1 1435 401 XLS3_Contig2011 AT3G24530 AAA-type ATPase family protein / ankyrin repeat family protein, contains Pfam profiles: PF00023 ankyrin repeat, PF00004 ATPase family associated with various cellular activities (AAA) [ 18404228 NP_566752.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8945685 CHROM_POS_END:8947793 } -=| MIDDLE_POINT:8946739 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.88 70 158 224 1 867 481 XLS3_Contig2012 AT3G17465 ribosomal protein L3 family protein [ AT3G17465 18401521 NP_566579.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5978065 CHROM_POS_END:5979578 } -=| MIDDLE_POINT:5978821 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 185 262 1 877 324 XLS3_Contig2013 AT2G43240 nucleotide-sugar transporter family protein, weak similarity to SP|P78382 CMP-sialic acid transporter {Homo sapiens} [ 30689311 NP_181853.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17975987 CHROM_POS_END:17982365 } -=| MIDDLE_POINT:17979176 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.24 35 77 214 1 881 787 XLS3_Contig2014 AT5G27640 similar to eukaryotic translation initiation factor 3 subunit 9, putative / eIF-3 eta, putative / eIF3b, putative [Arabidopsis thaliana] (TAIR:At5g25780.1) [ 79328836 NP_001031954.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9781210 CHROM_POS_END:9784762 } -=| MIDDLE_POINT:9782986 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 272 324 1 992 738 XLS3_Contig2015 AT4G37690 galactosyl transferase GMA12/MNN10 family protein, low similarity to alpha-1,2-galactosyltransferase, Schizosaccharomyces pombe (SP|Q09174) [ 22329223 NP_680773.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17708297 CHROM_POS_END:17709595 } -=| MIDDLE_POINT:17708946 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.95 56 153 269 1 870 432 XLS3_Contig2016 AT4G34640 farnesyl-diphosphate farnesyltransferase 1 / squalene synthase 1 (SQS1), identical to SP|P53799 Farnesyl-diphosphate farnesyltransferase (EC 2.5.1.21) (Squalene synthetase) (SQS) (SS) (FPP:FPP farnesyltransferase) {Arabidopsis thaliana} [ 15236168 NP_195190.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16538494 CHROM_POS_END:16541660 } -=| MIDDLE_POINT:16540077 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 213 257 1 919 410 XLS3_Contig2017 AT2G28840 ankyrin repeat family protein, contains ankyrin repeats, Pfam:PF00023 [ 30684032 NP_180450.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12385619 CHROM_POS_END:12387551 } -=| MIDDLE_POINT:12386585 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 179 258 1 882 456 XLS3_Contig2018 AT3G61040 cytochrome P450 family protein, similar to cytochrome P450 monooxygenase - Arabidopsis thaliana, EMBL:D78600 [ 15233027 NP_191663.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:22605049 CHROM_POS_END:22607100 } -=| MIDDLE_POINT:22606074 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.47 35 91 258 1 925 498 XLS3_Contig2019 AT4G29860 transducin family protein / WD-40 repeat family protein, contains 3 WD-40 repeats (PF00400) [ 42567255 NP_194715.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14603302 CHROM_POS_END:14605710 } -=| MIDDLE_POINT:14604506 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.65 50 95 188 1 918 386 XLS3_Contig2020 AT3G45620 transducin family protein / WD-40 repeat family protein, contains 7 WD-40 repeats [ 15231191 NP_190148.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16756903 CHROM_POS_END:16758978 } -=| MIDDLE_POINT:16757940 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.87 63 153 242 1 897 481 XLS3_Contig2021 AT1G12420 ACT domain-containing protein (ACR8), contains Pfam ACT domain PF01842 [ 15221327 NP_172704.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4226671 CHROM_POS_END:4228915 } -=| MIDDLE_POINT:4227793 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 63 194 307 1 1344 441 XLS3_Contig2022 no_hits_found 0 0 XLS3_Contig2023 AT5G58290 26S proteasome AAA-ATPase subunit (RPT3), identical to 26S proteasome AAA-ATPase subunit RPT3 GI:6652882 from (Arabidopsis thaliana) [ 15237159 NP_200637.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:23586381 CHROM_POS_END:23588342 } -=| MIDDLE_POINT:23587361 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 87 240 274 1 911 408 XLS3_Contig2024 AT3G57890 tubulin-specific chaperone C-related, contains weak similarity to Tubulin-specific chaperone C (Tubulin-folding cofactor C) (CFC) (Swiss-Prot:Q15814) (Homo sapiens) [ 18410836 NP_567059.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21449248 CHROM_POS_END:21452672 } -=| MIDDLE_POINT:21450960 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 251 383 1 1239 573 XLS3_Contig2025 AT3G30380 expressed protein, [ AT3G30380 15230760 NP_189657.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11976903 CHROM_POS_END:11979050 } -=| MIDDLE_POINT:11977976 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 60 240 399 1 1236 399 XLS3_Contig2026 AT3G15140 exonuclease family protein, contains exonuclease domain, Pfam:PF00929 [ 18400647 NP_566502.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5099719 CHROM_POS_END:5101724 } -=| MIDDLE_POINT:5100721 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.96 56 171 303 1 965 337 XLS3_Contig2027 AT2G22795 expressed protein [ AT2G22795 30681829 NP_850032.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9704460 CHROM_POS_END:9706664 } -=| MIDDLE_POINT:9705562 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.23 25 128 511 1 1527 734 XLS3_Contig2028 AT1G49600 RNA-binding protein 47 (RBP47), putative, similar to DNA binding protein ACBF GB:U90212 GI:1899187 from (Nicotiana tabacum) [ 15222783 NP_175383.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18360904 CHROM_POS_END:18363818 } -=| MIDDLE_POINT:18362361 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.87 63 166 261 1 944 445 XLS3_Contig2029 AT3G03420 Ku70-binding family protein, similar to Ku70-binding protein GB:AAD31085 GI:4867999 (Homo sapiens) [ 18396541 NP_566205.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:812534 CHROM_POS_END:813651 } -=| MIDDLE_POINT:813092 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.65 69 108 156 1 1400 194 XLS3_Contig2030 AT4G34660 SH3 domain-containing protein 2 (SH3P2), nearly identical to SH3 domain-containing protein 2 (Arabidopsis thaliana) GI:16974678 [ 18418491 NP_567969.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16545600 CHROM_POS_END:16548299 } -=| MIDDLE_POINT:16546949 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 230 290 1 983 368 XLS3_Contig2031 AT1G02205 CER1 protein, identical to maize gl1 homolog (glossy1 locus) GI:1209703 and CER1 GI:1199467 from (Arabidopsis thaliana) [ 30678265 NP_171723.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:418818 CHROM_POS_END:422154 } -=| MIDDLE_POINT:420486 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 61 302 490 1 1489 625 XLS3_Contig2032 AT3G54260 expressed protein, various predicted proteins, Arabidopsis thaliana [ 18410028 NP_566996.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20096075 CHROM_POS_END:20097723 } -=| MIDDLE_POINT:20096899 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 63 185 293 1 910 379 XLS3_Contig2033 AT4G26850 expressed protein [ AT4G26850 18416877 NP_567759.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13499268 CHROM_POS_END:13501151 } -=| MIDDLE_POINT:13500209 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.62 68 119 173 1 933 442 XLS3_Contig2034 AT3G52990 pyruvate kinase, putative, similar to pyruvate kinase, cytosolic isozyme (Glycine max) SWISS-PROT:Q42806 [ 18409740 NP_566976.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19660024 CHROM_POS_END:19663215 } -=| MIDDLE_POINT:19661619 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 200 263 1 883 527 XLS3_Contig2035 AT3G26100 regulator of chromosome condensation (RCC1) family protein, weak similarity to UVB-resistance protein UVR8 (Arabidopsis thaliana) GI:5478530 [ 42572533 NP_974362.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9539300 CHROM_POS_END:9541386 } -=| MIDDLE_POINT:9540343 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 375 480 1 1752 532 XLS3_Contig2036 AT2G43070 protease-associated (PA) domain-containing protein, contains protease associated (PA) domain, Pfam:PF02225 [ 42570411 NP_850383.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17918310 CHROM_POS_END:17921853 } -=| MIDDLE_POINT:17920081 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.7 45 132 287 1 1183 540 XLS3_Contig2037 AT4G19190 zinc knuckle (CCHC-type) family protein, contains Pfam domain, PF00098: Zinc knuckle [ 22328791 NP_193654.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10493334 CHROM_POS_END:10495980 } -=| MIDDLE_POINT:10494657 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 217 310 1 927 595 XLS3_Contig2038 AT1G78140 methyltransferase-related, similar to Probable delta(24)-sterol C-methyltransferase (Swiss-Prot:O14321) (Schizosaccharomyces pombe) [ 18411840 NP_565170.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:29406830 CHROM_POS_END:29408771 } -=| MIDDLE_POINT:29407800 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.51 59 99 166 1 958 355 XLS3_Contig2039 AT1G61580 60S ribosomal protein L3 (RPL3B), identical to ribosomal protein GI:806279 from (Arabidopsis thaliana) [ 15220533 NP_176352.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:22724498 CHROM_POS_END:22726067 } -=| MIDDLE_POINT:22725282 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 88 240 271 1 878 390 XLS3_Contig2040 AT2G35040 AICARFT/IMPCHase bienzyme family protein, similar to SP|P12048 Bifunctional purine biosynthesis protein purH (Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) (AICAR transformylase) [ 30686280 NP_850240.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14772426 CHROM_POS_END:14775348 } -=| MIDDLE_POINT:14773887 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 222 295 1 1088 596 XLS3_Contig2041 AT1G43190 polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative, similar to Polypyrimidine tract-binding protein 1 (PTB) (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo sapiens} SP|P26599, (Homo sapiens) GI:35770 [ 22329999 NP_175010.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16277872 CHROM_POS_END:16280625 } -=| MIDDLE_POINT:16279248 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 190 242 1 976 432 XLS3_Contig2042 AT5G26760 expressed protein [ AT5G26760 42573485 NP_974839.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9403872 CHROM_POS_END:9407173 } -=| MIDDLE_POINT:9405522 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.47 45 102 226 1 1001 735 XLS3_Contig2043 AT1G72330 alanine aminotransferase, putative, similar to alanine aminotransferase 2 SP|P34106 from Panicum miliaceum, SP|P52894 from Hordeum vulgare, GI:4730884 from Oryza sativa [ 30698866 NP_565040.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:27237299 CHROM_POS_END:27240233 } -=| MIDDLE_POINT:27238766 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 206 300 1 1029 540 XLS3_Contig2044 AT4G10840 kinesin light chain-related, low similarity to kinesin light chain (Plectonema boryanum) GI:2645229 [ 15236944 NP_192822.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:6656610 CHROM_POS_END:6659029 } -=| MIDDLE_POINT:6657819 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.75 61 155 252 1 894 609 XLS3_Contig2045 AT2G36780 UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase [ 15228034 NP_181216.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15424697 CHROM_POS_END:15426187 } -=| MIDDLE_POINT:15425442 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.69 50 115 230 1 1001 496 XLS3_Contig2046 AT1G13080 cytochrome P450 family protein, identical to gb|D78605 cytochrome P450 monooxygenase from Arabidopsis thaliana and is a member of the PF|00067 Cytochrome P450 family. ESTs gb|Z18072, gb|Z35218 and gb|T43466 come from this gene [ 15222174 NP_172767.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4459210 CHROM_POS_END:4460805 } -=| MIDDLE_POINT:4460007 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.56 38 127 326 1 996 502 XLS3_Contig2047 AT2G18245 expressed protein [ AT2G18245 18398681 NP_565432.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7944435 CHROM_POS_END:7946464 } -=| MIDDLE_POINT:7945449 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.34 45 75 165 1 979 398 XLS3_Contig2048 AT1G77000 F-box family protein, similar to GP|21554029| F-box protein AtFBL5 from (Arabidopsis thaliana) [ 18411319 NP_565147.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:28945782 CHROM_POS_END:28947295 } -=| MIDDLE_POINT:28946538 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 182 259 1 1204 360 XLS3_Contig2049 AT1G22170 phosphoglycerate/bisphosphoglycerate mutase family protein, similar to SP|P31217 Phosphoglycerate mutase 1 (EC 5.4.2.1) {Escherichia coli O157:H7} [ 18395083 NP_564161.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7826592 CHROM_POS_END:7828044 } -=| MIDDLE_POINT:7827318 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.69 73 128 174 1 864 334 XLS3_Contig2050 AT5G51970 sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative, similar to NAD-dependent sorbitol dehydrogenase from Malus x domestica (gi:4519539) [ 15242240 NP_200010.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21129046 CHROM_POS_END:21130510 } -=| MIDDLE_POINT:21129778 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 84 288 340 1 1112 364 XLS3_Contig2051 AT2G39840 serine/threonine protein phosphatase PP1 isozyme 4 (TOPP4) / phosphoprotein phosphatase 1, identical to SP|P48484 Serine/threonine protein phosphatase PP1 isozyme 4 (EC 3.1.3.16) {Arabidopsis thaliana}, phosphoprotein phosphatase 1 GI:166801 (Arabidopsis thaliana) [ 15225576 NP_181514.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16634508 CHROM_POS_END:16635867 } -=| MIDDLE_POINT:16635187 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 235 274 1 962 321 XLS3_Contig2052 no_hits_found 0 0 XLS3_Contig2053 AT3G63470 serine carboxypeptidase, putative, similar to SP|P52711 Serine carboxypeptidase II-3 precursor (EC 3.4.16.6) Hordeum vulgare [ 15229439 NP_191906.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:23449536 CHROM_POS_END:23451837 } -=| MIDDLE_POINT:23450686 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 63 180 282 1 928 502 XLS3_Contig2054 AT3G57150 dyskerin, putative / nucleolar protein NAP57, putative, similar to SP|P40615 Dyskerin (Nucleolar protein NAP57) {Rattus norvegicus} [ 15230232 NP_191274.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21165234 CHROM_POS_END:21166931 } -=| MIDDLE_POINT:21166082 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 84 270 321 1 1043 565 XLS3_Contig2055 AT1G06230 DNA-binding bromodomain-containing protein, contains bromodomain, INTERPRO:IPR001487 [ 15221424 NP_172113.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1907625 CHROM_POS_END:1910182 } -=| MIDDLE_POINT:1908903 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.45 49 106 213 1 1078 766 XLS3_Contig2056 AT1G17370 oligouridylate-binding protein, putative, similar to oligouridylate binding protein (Nicotiana plumbaginifolia) GI:6996560 [ 18394471 NP_564018.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5951835 CHROM_POS_END:5954818 } -=| MIDDLE_POINT:5953326 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 221 266 1 884 419 XLS3_Contig2057 AT1G01090 pyruvate dehydrogenase E1 component alpha subunit, chloroplast, identical to pyruvate dehydrogenase E1 alpha subunit GB:AAB86803 GI:2454182 from (Arabidopsis thaliana) [ 15223294 NP_171617.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:47705 CHROM_POS_END:49166 } -=| MIDDLE_POINT:48435 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 244 302 1 1095 428 XLS3_Contig2058 AT5G14220 protoporphyrinogen oxidase, putative, similar to protoporphyrinogen IX oxidase, mitochondrial (PPO II) from Nicotiana tabacum (SP|O24164), Glycine max, AB025102, Spinacia oleracea (GI:14349153) [ 22326801 NP_196926.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4583508 CHROM_POS_END:4587371 } -=| MIDDLE_POINT:4585439 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 247 370 1 1260 508 XLS3_Contig2059 AT1G18640 3-phosphoserine phosphatase (PSP), nearly identical to 3-phosphoserine phosphatase GI:3759177 from (Arabidopsis thaliana) [ 15221827 NP_173299.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:6416516 CHROM_POS_END:6418237 } -=| MIDDLE_POINT:6417376 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.73 79 94 118 1 1029 295 XLS3_Contig2060 AT3G53130 cytochrome P450 family protein, similar to Cytochrome P450 97B2 (SP:048921) (Glycine max) [ 42565881 NP_190881.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19703790 CHROM_POS_END:19706256 } -=| MIDDLE_POINT:19705023 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 204 278 1 893 539 XLS3_Contig2061 AT1G27090 glycine-rich protein [ AT1G27090 15223426 NP_174029.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9404028 CHROM_POS_END:9406085 } -=| MIDDLE_POINT:9405056 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.73 56 135 240 1 831 420 XLS3_Contig2062 AT1G20410 expressed protein [ AT1G20410 30686818 NP_173466.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7079039 CHROM_POS_END:7082494 } -=| MIDDLE_POINT:7080766 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.29 38 77 198 1 900 504 XLS3_Contig2063 no_hits_found 0 0 XLS3_Contig2064 AT5G57970 methyladenine glycosylase family protein, similar to SP|P05100 DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I, constitutive) {Escherichia coli} [ 15242914 NP_200605.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:23484542 CHROM_POS_END:23486136 } -=| MIDDLE_POINT:23485339 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.26 35 83 233 1 924 347 XLS3_Contig2065 AT3G16230 expressed protein, similar to ASC-1 complex subunit P50 (GI:12061189) (Homo sapiens) [ 42564243 NP_188244.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5500569 CHROM_POS_END:5503309 } -=| MIDDLE_POINT:5501939 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.37 50 82 161 1 912 449 XLS3_Contig2066 AT5G23520 expressed protein [ AT5G23520 15237781 NP_197743.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7929594 CHROM_POS_END:7931299 } -=| MIDDLE_POINT:7930446 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.24 30 78 258 1 892 435 XLS3_Contig2067 AT3G05530 26S proteasome AAA-ATPase subunit (RPT5a), identical to GB:AAF22525 GI:6652886 from (Arabidopsis thaliana) [ 15230005 NP_187204.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1603546 CHROM_POS_END:1605999 } -=| MIDDLE_POINT:1604772 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 95 295 308 1 960 424 XLS3_Contig2068 AT5G17290 autophagy protein Apg5 family, contains Pfam profile: PF04106 autophagy protein Apg5 [ 15237945 NP_197231.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5687162 CHROM_POS_END:5689823 } -=| MIDDLE_POINT:5688492 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 203 315 1 942 337 XLS3_Contig2069 AT3G27180 expressed protein [ AT3G27180 42565237 NP_189354.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:10028400 CHROM_POS_END:10031299 } -=| MIDDLE_POINT:10029849 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 165 231 1 943 518 XLS3_Contig2070 AT2G19540 transducin family protein / WD-40 repeat family protein, contains WD-40 repeats (PF00400) [ 15224798 NP_179544.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8468886 CHROM_POS_END:8471429 } -=| MIDDLE_POINT:8470157 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 187 288 1 898 469 XLS3_Contig2071 AT1G71695 peroxidase 12 (PER12) (P12) (PRXR6), identical to SP|Q96520 Peroxidase 12 precursor (EC 1.11.1.7) (Atperox P12) (PRXR6) (ATP4a) {Arabidopsis thaliana} [ 15217539 NP_177313.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:26968021 CHROM_POS_END:26970219 } -=| MIDDLE_POINT:26969120 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.95 59 167 282 1 1095 358 XLS3_Contig2072 AT1G77810 galactosyltransferase family protein, contains Pfam profile PF01762: Galactosyltransferase [ 42563297 NP_177904.3 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:29265793 CHROM_POS_END:29267895 } -=| MIDDLE_POINT:29266844 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 61 198 324 1 975 393 XLS3_Contig2073 AT5G35400 tRNA pseudouridine synthase family protein, weak similarity to SP|P07649 tRNA pseudouridine synthase A (EC 4.2.1.70) (Uracil hydrolyase) {Escherichia coli} [ 30692743 NP_198390.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13616646 CHROM_POS_END:13619470 } -=| MIDDLE_POINT:13618058 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.77 56 137 241 1 922 420 XLS3_Contig2074 AT1G33400 tetratricopeptide repeat (TPR)-containing protein, contains Pfam profile PF00515 TPR Domain [ 42562487 NP_174606.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12104871 CHROM_POS_END:12109468 } -=| MIDDLE_POINT:12107169 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.66 44 119 266 1 922 798 XLS3_Contig2075 AT1G01430 expressed protein, similar to hypothetical protein GB:CAB80917 GI:7267605 from (Arabidopsis thaliana) [ 30678135 NP_171650.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:156953 CHROM_POS_END:158536 } -=| MIDDLE_POINT:157744 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.75 45 129 285 1 901 456 XLS3_Contig2076 AT2G26760 cyclin, putative, similar to CYCB1-1 protein (Petunia x hybrida) GI:6093215, B-type cyclin (Nicotiana tabacum) GI:849074 [ 15225784 NP_180244.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11408629 CHROM_POS_END:11410283 } -=| MIDDLE_POINT:11409456 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.99 52 188 356 1 1229 387 XLS3_Contig2077 AT5G48430 expressed protein, low similarity to extracellular dermal glycoprotein EDGP precursor (Daucus carota) GI:285741, SP|P13917 Basic 7S globulin precursor {Glycine max} [ 15238970 NP_199654.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19645118 CHROM_POS_END:19646338 } -=| MIDDLE_POINT:19645728 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.11 25 81 320 1 928 406 XLS3_Contig2078 AT5G60390 elongation factor 1-alpha / EF-1-alpha, identical to SWISS-PROT:P13905 elongation factor 1-alpha (EF-1-alpha) (Arabidopsis thaliana) [ 15239308 NP_200847.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:24306452 CHROM_POS_END:24307901 } -=| MIDDLE_POINT:24307176 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 95 260 272 1 913 449 XLS3_Contig2079 AT5G03860 malate synthase, putative, strong similarity to glyoxysomal malate synthase from Brassica napus (SP|P13244) [ 15237551 NP_196006.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1032275 CHROM_POS_END:1034526 } -=| MIDDLE_POINT:1033400 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 213 257 1 1006 562 XLS3_Contig2080 AT2G38670 ethanolamine-phosphate cytidylyltransferase, putative / phosphorylethanolamine transferase, putative / CTP:phosphoethanolamine cytidylyltransferase, putative, similar to SP|Q99447 Ethanolamine-phosphate cytidylyltransferase (EC 2.7.7.14) {Homo sapiens} [ 15224925 NP_181401.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16176057 CHROM_POS_END:16178758 } -=| MIDDLE_POINT:16177407 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 226 335 1 1318 421 XLS3_Contig2081 AT1G78290 serine/threonine protein kinase, putative, similar to serine-threonine protein kinase (Triticum aestivum) gi|2055374|gb|AAB58348 [ 15218270 NP_177952.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:29462350 CHROM_POS_END:29463802 } -=| MIDDLE_POINT:29463076 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 201 240 1 915 343 XLS3_Contig2082 AT5G01220 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase / sulfolipid synthase (SQD2), identical to GI:20302857 [ 30679163 NP_568085.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:86906 CHROM_POS_END:89884 } -=| MIDDLE_POINT:88395 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 324 440 1 1367 510 XLS3_Contig2083 AT3G49660 transducin family protein / WD-40 repeat family protein, beta-transducin, Schizosaccharomyces pombe, EMBL:CAA17803 [ 15229187 NP_190535.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18424675 CHROM_POS_END:18426208 } -=| MIDDLE_POINT:18425441 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 207 284 1 973 317 XLS3_Contig2084 AT1G70580 glutamate:glyoxylate aminotransferase 2 (GGT2), identical to glutamate:glyoxylate aminotransferase 2 (Arabidopsis thaliana) GI:24461829 [ 15223186 NP_177215.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:26616885 CHROM_POS_END:26619508 } -=| MIDDLE_POINT:26618196 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 84 338 398 1 1379 481 XLS3_Contig2085 AT5G55230 microtubule associated protein (MAP65/ASE1) family protein, low similarity to protein regulating cytokinesis 1 (PRC1) (Homo sapiens) GI:2865521 [ 15240485 NP_200334.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22419942 CHROM_POS_END:22422408 } -=| MIDDLE_POINT:22421175 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.89 70 168 240 1 854 587 XLS3_Contig2086 AT5G14970 expressed protein [ AT5G14970 15242177 NP_197001.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4847371 CHROM_POS_END:4848763 } -=| MIDDLE_POINT:4848067 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.66 54 159 291 1 896 355 XLS3_Contig2087 AT4G35310 calcium-dependent protein kinase, putative / CDPK, putative, similar to calmodulin-domain protein kinase CDPK isoform 6 (Arabidopsis thaliana) gi|1399275|gb|AAB03246 [ 15236966 NP_195257.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16802441 CHROM_POS_END:16804633 } -=| MIDDLE_POINT:16803537 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 209 281 1 1028 556 XLS3_Contig2088 AT5G42250 alcohol dehydrogenase, putative, similar to alcohol dehydrogenase ADH GI:7705214 from (Lycopersicon esculentum) [ 15238330 NP_199040.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16911315 CHROM_POS_END:16914678 } -=| MIDDLE_POINT:16912996 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 208 290 1 924 390 XLS3_Contig2089 AT5G57850 aminotransferase class IV family protein, contains Pfam profile: PF01063 aminotransferase class IV [ 22327924 NP_200593.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:23452774 CHROM_POS_END:23454513 } -=| MIDDLE_POINT:23453643 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.65 55 132 238 1 959 373 XLS3_Contig2090 AT4G26690 glycerophosphoryl diester phosphodiesterase family protein, weak similarity to glycerophosphodiester phosphodiesterase (Borrelia hermsii) GI:1399038 [ 18416801 NP_567755.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13456799 CHROM_POS_END:13459896 } -=| MIDDLE_POINT:13458347 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 62 250 401 1 1311 759 XLS3_Contig2091 AT4G02290 glycosyl hydrolase family 9 protein, similar to endo-1,4-beta glucanase [ 15235301 NP_192138.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1002654 CHROM_POS_END:1005125 } -=| MIDDLE_POINT:1003889 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 376 508 1 1679 516 XLS3_Contig2092 AT1G13570 F-box family protein, contains F-box domain Pfam:PF00646 [ 15222887 NP_172814.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4642525 CHROM_POS_END:4643927 } -=| MIDDLE_POINT:4643226 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 182 277 1 945 416 XLS3_Contig2093 AT4G28610 myb family transcription factor, putative / phosphate starvation response regulator, putative (PHR1), contains Pfam profile: PF00249 myb-like DNA-binding domain [ 22329004 NP_194590.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14133170 CHROM_POS_END:14134957 } -=| MIDDLE_POINT:14134063 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.24 35 68 192 1 932 409 XLS3_Contig2094 AT1G30510 ferredoxin--NADP(+) reductase, putative / adrenodoxin reductase, putative, strong similarity to SP|P41345 Ferredoxin--NADP reductase, root isozyme, chloroplast precursor (EC 1.18.1.2) (FNR) {Oryza sativa}, ferredoxin-NADP reductase precursor (Zea mays) GI:500751 [ 30691910 NP_849734.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:10807132 CHROM_POS_END:10808966 } -=| MIDDLE_POINT:10808049 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 192 256 1 890 382 XLS3_Contig2095 AT5G20950 glycosyl hydrolase family 3 protein, beta-D-glucan exohydrolase, Nicotiana tabacum, EMBL:AB017502 [ 30688067 NP_851048.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7107611 CHROM_POS_END:7110777 } -=| MIDDLE_POINT:7109194 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 182 236 1 961 624 XLS3_Contig2096 AT1G53700 protein kinase, putative, similar to cucumber protein kinase CsPK3 (Cucumis sativus) gi|7416109|dbj|BAA93704 [ 15220907 NP_175774.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20052272 CHROM_POS_END:20053702 } -=| MIDDLE_POINT:20052987 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.96 63 182 285 1 867 476 XLS3_Contig2097 AT3G18490 aspartyl protease family protein, contains Pfam domain, PF00026: eukaryotic aspartyl protease [ 15229656 NP_188478.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6349096 CHROM_POS_END:6350598 } -=| MIDDLE_POINT:6349847 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.43 54 72 132 1 1415 500 XLS3_Contig2098 AT4G12710 armadillo/beta-catenin repeat family protein, contains Pfam profile: PF00514 armadillo/beta-catenin-like repeat [ 15235456 NP_193007.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7485037 CHROM_POS_END:7486730 } -=| MIDDLE_POINT:7485883 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.82 60 172 286 1 921 402 XLS3_Contig2099 AT3G55070 expressed protein [ AT3G55070 15233170 NP_191067.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20419354 CHROM_POS_END:20421864 } -=| MIDDLE_POINT:20420609 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 206 320 1 1026 418 XLS3_Contig2100 AT5G19330 armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein, contains armadillo/beta-catenin-like repeats, Pfam:PF00514 and a BTB/POZ domain, Pfam:PF00651 [ 30687245 NP_850852.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:6508097 CHROM_POS_END:6512703 } -=| MIDDLE_POINT:6510400 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 444 577 1 1788 710 XLS3_Contig2101 AT5G11420 expressed protein, contains Pfam profile PF04862: Protein of unknown function, DUF642 [ 15239049 NP_196703.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3644656 CHROM_POS_END:3646992 } -=| MIDDLE_POINT:3645824 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 279 356 1 1291 366 XLS3_Contig2102 AT5G57690 diacylglycerol kinase, putative, contains INTERPRO domain, IPR001206, DAG-kinase catalytic domain [ 15242824 NP_200577.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:23389289 CHROM_POS_END:23391695 } -=| MIDDLE_POINT:23390492 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 56 151 269 1 1283 498 XLS3_Contig2103 no_hits_found 0 0 XLS3_Contig2104 AT3G45640 mitogen-activated protein kinase, putative / MAPK, putative (MPK3), identical to mitogen-activated protein kinase homolog (AtMPK3)(Arabidopsis thaliana) SWISS-PROT:Q39023 [ 15231196 NP_190150.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16767903 CHROM_POS_END:16769461 } -=| MIDDLE_POINT:16768682 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 87 232 265 1 908 370 XLS3_Contig2105 AT3G20820 leucine-rich repeat family protein, contains similarity to Cf-2.1 (Lycopersicon pimpinellifolium) gi|1184075|gb|AAC15779 [ 15232373 NP_188718.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7280936 CHROM_POS_END:7282033 } -=| MIDDLE_POINT:7281484 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 181 261 1 912 365 XLS3_Contig2106 AT4G39490 similar to cytochrome P450, putative [Arabidopsis thaliana] (TAIR:At4g32170.1) [ 79326551 NP_001031814.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18365223 CHROM_POS_END:18366782 } -=| MIDDLE_POINT:18366002 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.97 45 148 325 1 1440 519 XLS3_Contig2107 AT3G51895 sulfate transporter (ST1), identical to sulfate transporter (Arabidopsis thaliana) GI:2285885 [ 15231069 NP_190758.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19262481 CHROM_POS_END:19266655 } -=| MIDDLE_POINT:19264568 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 236 308 1 1069 658 XLS3_Contig2108 AT1G56430 nicotianamine synthase, putative, similar to nicotianamine synthase (Lycopersicon esculentum)(GI:4753801), nicotianamine synthase 2 (Hordeum vulgare)(GI:4894912) [ 15223535 NP_176038.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21140688 CHROM_POS_END:21141662 } -=| MIDDLE_POINT:21141175 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.98 63 173 273 1 917 324 XLS3_Contig2109 no_hits_found 0 0 XLS3_Contig2110 AT1G17160 pfkB-type carbohydrate kinase family protein, contains Pfam profile: PF00294 pfkB family carbohydrate kinase [ 15220039 NP_173159.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5867671 CHROM_POS_END:5869208 } -=| MIDDLE_POINT:5868439 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.92 71 175 244 1 883 379 XLS3_Contig2111 AT2G45290 transketolase, putative, strong similarity to transketolase 1 (Capsicum annuum) GI:3559814 [ 30689983 NP_566041.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18679811 CHROM_POS_END:18682663 } -=| MIDDLE_POINT:18681237 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 84 247 293 1 896 741 XLS3_Contig2112 AT4G31860 protein phosphatase 2C, putative / PP2C, putative, protein phosphatase 2C, Schizosaccharomyces pombe, PIR2:S54297 [ 15236548 NP_194914.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:15406691 CHROM_POS_END:15408595 } -=| MIDDLE_POINT:15407643 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 207 283 1 996 357 XLS3_Contig2113 AT3G17480 F-box family protein, contains F-box domain Pfam:PF00646 [ 15229052 NP_188375.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5983205 CHROM_POS_END:5984326 } -=| MIDDLE_POINT:5983765 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.11 24 55 229 1 954 373 XLS3_Contig2114 AT5G10380 zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) [ 15238146 NP_196600.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3267820 CHROM_POS_END:3268725 } -=| MIDDLE_POINT:3268272 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.39 43 96 222 1 830 301 XLS3_Contig2115 AT4G16780 homeobox-leucine zipper protein 4 (HAT4) / HD-ZIP protein 4, SP|Q05466|HAT4_ARATH Homeobox-leucine zipper protein HAT4 (HD-ZIP protein 4) (SP:Q05466) (Arabidopsis thaliana) (HD-ZIP homeotic protein Athb-2 [ 15235882 NP_193411.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9449310 CHROM_POS_END:9450623 } -=| MIDDLE_POINT:9449966 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.97 62 195 311 1 1302 284 XLS3_Contig2116 AT4G23860 PHD finger protein-related, similar to Pfam profiles PF02207: Putative zinc finger in N-recognin, weak hit to PF00628: PHD-finger [ 42567081 NP_194117.3 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:12409346 CHROM_POS_END:12411346 } -=| MIDDLE_POINT:12410346 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 51 230 447 1 1532 452 XLS3_Contig2117 AT2G44680 casein kinase II beta chain, putative, similar to casein kinase II beta-3 chain (CK II) (Arabidopsis thaliana) SWISS-PROT:O81275 [ 15224934 NP_181996.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:18433973 CHROM_POS_END:18435241 } -=| MIDDLE_POINT:18434607 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.73 64 143 221 1 898 283 XLS3_Contig2118 AT3G48310 cytochrome P450 71A22, putative (CYP71A22), Identical to Cytochrome P450 71A22 (SP:Q9STL1)(Arabidopsis thaliana) [ 22331680 NP_680110.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17899177 CHROM_POS_END:17900734 } -=| MIDDLE_POINT:17899955 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.51 36 106 290 1 900 490 XLS3_Contig2119 AT3G26730 zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) [ 22331355 NP_189307.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9825007 CHROM_POS_END:9828507 } -=| MIDDLE_POINT:9826757 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.51 56 86 151 1 816 772 XLS3_Contig2120 AT4G11240 serine/threonine protein phosphatase PP1 isozyme 6 (PP1BG) (TOPP6), identical to SP|P48486 Serine/threonine protein phosphatase PP1 isozyme 6 (EC 3.1.3.16) {Arabidopsis thaliana} [ 18413493 NP_567375.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6847329 CHROM_POS_END:6849028 } -=| MIDDLE_POINT:6848178 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.79 81 113 138 1 900 322 XLS3_Contig2121 AT5G22790 expressed protein [ AT5G22790 15242979 NP_197671.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7599398 CHROM_POS_END:7601576 } -=| MIDDLE_POINT:7600487 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.75 68 139 203 1 935 433 XLS3_Contig2122 AT2G26000 similar to zinc finger (ubiquitin-hydrolase) domain-containing protein [Arabidopsis thaliana] (TAIR:At2g42160.1) [ 79323080 NP_001031419.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:11089481 CHROM_POS_END:11092215 } -=| MIDDLE_POINT:11090848 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.9 67 153 226 1 946 479 XLS3_Contig2123 AT2G19560 proteasome protein-related, weak similarity to 26S proteasome non-ATPase regulatory subunit 3 (26S proteasome regulatory subunit S3) (p58) (Transplantation antigen P91A) (Tum-P91A antigen) (Swiss-Prot:P14685) (Mus musculus) [ 30680717 NP_179546.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8473006 CHROM_POS_END:8476151 } -=| MIDDLE_POINT:8474578 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.97 76 170 221 1 928 413 XLS3_Contig2124 AT1G50920 GTP-binding protein-related, similar to GTP-binding protein SP:Q99ME9 from (Mus musculus) [ 15223676 NP_175505.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18874223 CHROM_POS_END:18876238 } -=| MIDDLE_POINT:18875230 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 90 230 254 1 888 671 XLS3_Contig2125 AT3G25500 formin homology 2 domain-containing protein / FH2 domain-containing protein, contains formin homology 2 domain, Pfam:PF02181 [ 15230845 NP_189177.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9252557 CHROM_POS_END:9256063 } -=| MIDDLE_POINT:9254310 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.59 75 75 100 1 899 1051 XLS3_Contig2126 AT1G72970 glucose-methanol-choline (GMC) oxidoreductase family protein, similar to mandelonitrile lyase from Prunus serotina (SP|P52706, SP|P52707) [ 18410230 NP_565050.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:27456533 CHROM_POS_END:27459367 } -=| MIDDLE_POINT:27457950 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 62 249 396 1 1504 594 XLS3_Contig2127 AT3G08950 electron transport SCO1/SenC family protein, similar to SP|P23833 SCO1 protein, mitochondrial precursor {Saccharomyces cerevisiae} [ 18398306 NP_566339.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2727290 CHROM_POS_END:2729294 } -=| MIDDLE_POINT:2728292 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.98 76 139 181 1 1188 334 XLS3_Contig2128 AT4G28740 expressed protein [ AT4G28740 18417257 NP_567817.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:14201057 CHROM_POS_END:14202548 } -=| MIDDLE_POINT:14201802 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 191 297 1 1187 347 XLS3_Contig2129 AT3G49990 expressed protein [ AT3G49990 15229649 NP_190568.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18543475 CHROM_POS_END:18544983 } -=| MIDDLE_POINT:18544229 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.74 45 171 379 1 1209 502 XLS3_Contig2130 AT4G38650 glycosyl hydrolase family 10 protein, similar to tapetum specific protein GI:3885492 from (Zea mays) [ 42567513 NP_195577.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18063371 CHROM_POS_END:18065763 } -=| MIDDLE_POINT:18064567 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.79 54 145 266 1 1017 562 XLS3_Contig2131 AT5G45950 GDSL-motif lipase/hydrolase family protein, similar to family II lipase EXL3 (GI:15054386) and EXL1 (GI:15054382) (Arabidopsis thaliana), anther-specific proline-rich protein APG (Arabidopsis thaliana) GI:22599 [ 15237350 NP_199407.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18651382 CHROM_POS_END:18653739 } -=| MIDDLE_POINT:18652560 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.61 51 110 214 1 893 357 XLS3_Contig2132 AT1G70940 auxin transport protein, putative (PIN3), similar to auxin transport protein (Arabidopsis thaliana) gi|5817301|gb|AAD52695 [ 15223296 NP_177250.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:26746832 CHROM_POS_END:26749533 } -=| MIDDLE_POINT:26748182 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 62 220 352 1 1050 640 XLS3_Contig2133 AT3G10410 serine carboxypeptidase III, putative, similar to serine carboxypeptidase III from Oryza sativa SP|P37891, Matricaria chamomilla GI:6960455, Hordeum vulgare SP|P21529, Triticum aestivum SP|P11515 [ 15228281 NP_187652.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3235523 CHROM_POS_END:3238068 } -=| MIDDLE_POINT:3236795 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 55 276 500 1 1539 516 XLS3_Contig2134 AT3G21055 photosystem II 5 kD protein, putative, identical to Swiss-Prot:Q39195 photosystem II 5 kDa protein, chloroplast precursor (PSII-T) (Arabidopsis thaliana) [ 18402859 NP_566674.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7376767 CHROM_POS_END:7377078 } -=| MIDDLE_POINT:7376922 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.25 58 65 111 1 628 103 XLS3_Contig2135 AT1G49670 ARP protein (REF), identical to ARP protein GB:CAA89858 GI:886434 from (Arabidopsis thaliana) [ 22330139 NP_175390.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18385259 CHROM_POS_END:18389689 } -=| MIDDLE_POINT:18387474 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 360 509 1 1698 629 XLS3_Contig2136 AT1G51130 expressed protein, similar to unknown protein GI:9294403 from (Arabidopsis thaliana) [ 15223745 NP_175525.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18943148 CHROM_POS_END:18945228 } -=| MIDDLE_POINT:18944188 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.42 48 90 186 1 821 403 XLS3_Contig2137 AT5G27330 expressed protein [ AT5G27330 15240907 NP_198085.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9633000 CHROM_POS_END:9634886 } -=| MIDDLE_POINT:9633943 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.21 28 75 267 1 885 628 XLS3_Contig2138 AT4G36400 FAD linked oxidase family protein, low similarity to SP|Q12627 from Kluyveromyces lactis and SP|P32891 from Saccharomyces cerevisiae [ 42567457 NP_568003.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17197268 CHROM_POS_END:17200475 } -=| MIDDLE_POINT:17198871 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.86 51 95 186 1 953 559 XLS3_Contig2139 AT2G33560 spindle checkpoint protein-related, similar to spindle checkpoint protein BubR1 (GI:22128593) (Xenopus laevis) [ 18403316 NP_565767.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14220886 CHROM_POS_END:14222994 } -=| MIDDLE_POINT:14221940 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.96 60 167 277 1 891 395 XLS3_Contig2140 AT2G20610 aminotransferase, putative, similar to nicotianamine aminotransferase from Hordeum vulgare (GI:6498122, GI:6469087) [ 15225387 NP_179650.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:8885231 CHROM_POS_END:8887379 } -=| MIDDLE_POINT:8886305 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.93 51 155 299 1 912 462 XLS3_Contig2141 AT1G61250 secretory carrier membrane protein (SCAMP) family protein (SC3), contains Pfam domain, PF04144: SCAMP family [ 15219893 NP_176320.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22589700 CHROM_POS_END:22592329 } -=| MIDDLE_POINT:22591014 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 214 310 1 1276 289 XLS3_Contig2142 AT1G76700 DNAJ heat shock N-terminal domain-containing protein, similar to SP|P39101 CAJ1 protein, Saccharomyces cerevisiae [ 15223142 NP_177796.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:28785513 CHROM_POS_END:28787916 } -=| MIDDLE_POINT:28786714 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 86 172 198 1 1065 398 XLS3_Contig2143 no_hits_found 0 0 XLS3_Contig2144 AT1G21050 expressed protein, contains Pfam profile PF04759: Protein of unknown function, DUF617 [ 18394943 NP_564130.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7366848 CHROM_POS_END:7367585 } -=| MIDDLE_POINT:7367216 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.46 47 114 239 1 1324 245 XLS3_Contig2145 AT2G46930 pectinacetylesterase, putative, similar to pectinacetylesterase precursor GI:1431629 from (Vigna radiata) [ 15226462 NP_182216.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19290694 CHROM_POS_END:19293159 } -=| MIDDLE_POINT:19291926 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 189 268 1 1114 416 XLS3_Contig2146 AT1G27480 lecithin:cholesterol acyltransferase family protein [ AT1G27480 18396359 NP_564286.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9544594 CHROM_POS_END:9546155 } -=| MIDDLE_POINT:9545374 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 63 185 293 1 972 432 XLS3_Contig2147 AT4G10400 F-box family protein, contains F-box domain Pfam:PF00646 [ 42566399 NP_192778.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6446331 CHROM_POS_END:6447711 } -=| MIDDLE_POINT:6447021 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.25 34 80 233 1 938 409 XLS3_Contig2148 AT1G52510 hydrolase, alpha/beta fold family protein, low similarity to SP|P22643 Haloalkane dehalogenase (EC 3.8.1.5) {Xanthobacter autotrophicus} [ 22330196 NP_175660.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:19566708 CHROM_POS_END:19568929 } -=| MIDDLE_POINT:19567818 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 209 293 1 917 380 XLS3_Contig2149 AT1G72880 acid phosphatase survival protein SurE, putative, similar to Swiss-Prot:P36664 acid phosphatase surE (EC 3.1.3.2) (Stationary-phase survival protein surE) (Escherichia coli O157:H7) [ 30698907 NP_849880.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:27427339 CHROM_POS_END:27429589 } -=| MIDDLE_POINT:27428464 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.62 59 120 201 1 941 385 XLS3_Contig2150 no_hits_found 0 0 XLS3_Contig2151 AT1G54100 aldehyde dehydrogenase, putative / antiquitin, putative, strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus} [ 15221042 NP_175812.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:20199103 CHROM_POS_END:20202521 } -=| MIDDLE_POINT:20200812 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 208 257 1 1016 508 XLS3_Contig2152 AT5G06150 cyclin 1b (CYC1b), identical to cyclin (Arabidopsis thaliana) GI:1360646 [ 15239938 NP_196233.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1859543 CHROM_POS_END:1861571 } -=| MIDDLE_POINT:1860557 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.68 48 126 260 1 1027 445 XLS3_Contig2153 AT3G01470 homeobox-leucine zipper protein 5 (HAT5) / HD-ZIP protein 5 / HD-ZIP protein (HB-1), identical to homeobox-leucine zipper protein HAT5 (HD-ZIP protein 5) (HD-ZIP protein ATHB-1) GB:Q02283 (Arabidopsis thaliana) [ 15232122 NP_186796.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:182655 CHROM_POS_END:184041 } -=| MIDDLE_POINT:183348 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.35 52 80 152 1 925 272 XLS3_Contig2154 AT1G09840 shaggy-related protein kinase kappa / ASK-kappa (ASK10), identical to shaggy-related protein kinase kappa SP:Q39019 GI:717180 from (Arabidopsis thaliana) [ 15218288 NP_172455.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:3196116 CHROM_POS_END:3199526 } -=| MIDDLE_POINT:3197821 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.64 73 125 171 1 851 421 XLS3_Contig2155 AT1G14720 xyloglucan:xyloglucosyl transferase / xyloglucan endotransglycosylase / endo-xyloglucan transferase (XTR2), identical to endoxyloglucan transferase (Arabidopsis thaliana) GI:5533311 [ 15223878 NP_172925.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5066801 CHROM_POS_END:5068461 } -=| MIDDLE_POINT:5067631 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 172 231 1 875 332 XLS3_Contig2156 AT5G44120 12S seed storage protein (CRA1), nearly identical to SP|P15455 (Plant Mol Biol 11:805-820 (1988)) [ 15241422 NP_199225.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17773687 CHROM_POS_END:17775473 } -=| MIDDLE_POINT:17774580 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.51 36 126 342 1 1035 472 XLS3_Contig2157 AT5G53160 expressed protein, similar to unknown protein (pir||T02893) [ 15238661 NP_200128.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21578252 CHROM_POS_END:21579179 } -=| MIDDLE_POINT:21578715 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.79 80 141 176 1 890 188 XLS3_Contig2158 AT2G38650 glycosyl transferase family 8 protein, contains Pfam profile: PF01501 glycosyl transferase family 8 [ 18404824 NP_565893.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16168934 CHROM_POS_END:16172601 } -=| MIDDLE_POINT:16170767 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 56 203 361 1 1675 619 XLS3_Contig2159 AT5G53970 aminotransferase, putative, similar to nicotianamine aminotransferase from Hordeum vulgare (GI:6498122, GI:6469087) [ 15239521 NP_200208.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21927902 CHROM_POS_END:21929820 } -=| MIDDLE_POINT:21928861 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.95 61 163 263 1 886 414 XLS3_Contig2160 AT1G47380 protein phosphatase 2C-related / PP2C-related, contains similarity to protein phosphatase 2C GB:AAD25933 GI:4587992 from (Arabidopsis thaliana) [ 18401703 NP_564504.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17375444 CHROM_POS_END:17377745 } -=| MIDDLE_POINT:17376594 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 185 227 1 899 428 XLS3_Contig2161 AT5G62350 invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22), similar to SP|Q42534 Pectinesterase 2 precursor (EC 3.1.1.11) (Pectin methylesterase 2) (PE 2) {Arabidopsis thaliana} [ 15241799 NP_201041.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:25054730 CHROM_POS_END:25055338 } -=| MIDDLE_POINT:25055034 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.33 57 67 117 1 554 202 XLS3_Contig2162 AT4G26530 fructose-bisphosphate aldolase, putative, strong similarity to SP|P22197 Fructose-bisphosphate aldolase, cytoplasmic isozyme (EC 4.1.2.13) {Arabidopsis thaliana} [ 15236768 NP_194383.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:13391573 CHROM_POS_END:13392944 } -=| MIDDLE_POINT:13392258 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 87 251 286 1 906 358 XLS3_Contig2163 AT1G68570 proton-dependent oligopeptide transport (POT) family protein, contains Pfam profile: PF00854 POT family [ 15221439 NP_177024.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:25750474 CHROM_POS_END:25753773 } -=| MIDDLE_POINT:25752123 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 413 565 1 1993 596 XLS3_Contig2164 AT3G50790 late embryogenesis abundant protein, putative / LEA protein, putative, similar to Picea glauca late embryogenesis abundant protein (EMB8), PID:g1350545 SP|Q40863 [ 15230305 NP_190648.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18891055 CHROM_POS_END:18892921 } -=| MIDDLE_POINT:18891988 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 63 174 275 1 1036 408 XLS3_Contig2165 AT5G63220 expressed protein, contains Pfam PF04190: Protein of unknown function (DUF410) [ 30697809 NP_201127.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:25370482 CHROM_POS_END:25372636 } -=| MIDDLE_POINT:25371559 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.85 61 153 249 1 989 324 XLS3_Contig2166 AT5G08420 expressed protein [ AT5G08420 15241622 NP_196459.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2713556 CHROM_POS_END:2716065 } -=| MIDDLE_POINT:2714810 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 180 247 1 916 391 XLS3_Contig2167 no_hits_found 0 0 XLS3_Contig2168 AT5G52510 scarecrow-like transcription factor 8 (SCL8) [ AT5G52510 30696193 NP_200064.3 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21324422 CHROM_POS_END:21326344 } -=| MIDDLE_POINT:21325383 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.3 35 105 295 1 934 640 XLS3_Contig2169 AT1G10150 expressed protein, similar to ESTs gb|T20511, gb|T45308, gb|H36493, and gb|AA651176 [ 18391117 NP_563862.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3326162 CHROM_POS_END:3327406 } -=| MIDDLE_POINT:3326784 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.62 46 111 238 1 1032 414 XLS3_Contig2170 AT4G24820 26S proteasome regulatory subunit, putative (RPN7), contains similarity to ubiquitin activating enzyme GI:3647283 from (Lycopersicon esculentum) [ 18416433 NP_567709.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:12790481 CHROM_POS_END:12792609 } -=| MIDDLE_POINT:12791545 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.65 46 123 264 1 901 387 XLS3_Contig2171 AT3G05910 pectinacetylesterase, putative, similar to pectinacetylesterase precursor GI:1431629 from (Vigna radiata) [ 18397406 NP_566263.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1764515 CHROM_POS_END:1767246 } -=| MIDDLE_POINT:1765880 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 207 322 1 1077 415 XLS3_Contig2172 AT5G27710 expressed protein [ AT5G27710 79523491 NP_198123.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9813073 CHROM_POS_END:9815022 } -=| MIDDLE_POINT:9814047 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.73 50 147 289 1 945 335 XLS3_Contig2173 AT3G04970 zinc finger (DHHC type) family protein, similar to Golgi-specific DHHC zinc figer protein (Mus musculus) GI:21728103 [ 42563512 NP_187148.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1376246 CHROM_POS_END:1378345 } -=| MIDDLE_POINT:1377295 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 210 295 1 1239 397 XLS3_Contig2174 AT4G32600 zinc finger (C3HC4-type RING finger) family protein, low similarity to RING finger protein 38 (Homo sapiens) GI:21666412 [ 22329099 NP_194986.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15724016 CHROM_POS_END:15725743 } -=| MIDDLE_POINT:15724879 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.55 44 130 291 1 892 453 XLS3_Contig2175 AT1G66900 expressed protein [ AT1G66900 22330474 NP_176862.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:24963215 CHROM_POS_END:24964918 } -=| MIDDLE_POINT:24964066 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.82 76 147 193 1 888 272 XLS3_Contig2176 AT4G39660 alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative, similar to SP|Q64565 Alanine--glyoxylate aminotransferase 2, mitochondrial precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate aminotransferase) {Rattus norvegicus} [ 18420498 NP_568064.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18406791 CHROM_POS_END:18409256 } -=| MIDDLE_POINT:18408023 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.99 75 172 229 1 891 476 XLS3_Contig2177 AT5G63140 calcineurin-like phosphoesterase family protein, contains Pfam profile: PF00149 calcineurin-like phosphoesterase [ 15242654 NP_201119.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:25345463 CHROM_POS_END:25346842 } -=| MIDDLE_POINT:25346152 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.81 63 144 226 1 985 389 XLS3_Contig2178 AT5G03040 calmodulin-binding family protein, similar to SF16 protein (Helianthus annuus) GI:560150 [ 18414094 NP_568110.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:710889 CHROM_POS_END:712405 } -=| MIDDLE_POINT:711647 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.74 53 155 291 1 1040 291 XLS3_Contig2179 AT2G19480 nucleosome assembly protein (NAP), putative, similar to nucleosome assembly protein 1 (Glycine max) GI:1161252 [ 15224782 NP_179538.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8445683 CHROM_POS_END:8448122 } -=| MIDDLE_POINT:8446902 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 62 153 244 1 1522 379 XLS3_Contig2180 AT1G31190 inositol monophosphatase family protein, similar to SP|P29218 Myo-inositol-1(or 4)-monophosphatase (EC 3.1.3.25) (Inositol monophosphatase) {Homo sapiens} [ 18397837 NP_564376.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11144842 CHROM_POS_END:11146781 } -=| MIDDLE_POINT:11145811 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.93 78 168 214 1 1048 371 XLS3_Contig2181 AT4G26260 expressed protein, similar to myo-inositol oxygenase (Sus scrofa) gi|17432544|gb|AAL39076 [ 30687167 NP_194356.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:13297948 CHROM_POS_END:13300155 } -=| MIDDLE_POINT:13299051 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 241 324 1 1160 317 XLS3_Contig2182 AT5G60390 elongation factor 1-alpha / EF-1-alpha, identical to SWISS-PROT:P13905 elongation factor 1-alpha (EF-1-alpha) (Arabidopsis thaliana) [ 15239308 NP_200847.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:24306452 CHROM_POS_END:24307901 } -=| MIDDLE_POINT:24307176 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 96 260 270 1 893 449 XLS3_Contig2183 AT3G54470 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS), identical to SP|Q42586 Uridine 5'-monophosphate synthase (UMP synthase) (Includes: Orotate phosphoribosyltransferase (EC 2.4.2.10) (OPRtase) [ 22331787 NP_680130.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20179263 CHROM_POS_END:20181223 } -=| MIDDLE_POINT:20180243 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 200 274 1 989 476 XLS3_Contig2184 AT3G20330 aspartate carabmoyltransferase, chloroplast / aspartate transcarbamylase / ATCase (PYRB), identical to SP|P49077 Aspartate carbamoyltransferase, chloroplast precursor (EC 2.1.3.2) (Aspartate transcarbamylase) (ATCase) {Arabidopsis thaliana} [ 15231112 NP_188668.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7090360 CHROM_POS_END:7091910 } -=| MIDDLE_POINT:7091135 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.68 69 141 203 1 894 390 XLS3_Contig2185 AT3G20240 mitochondrial substrate carrier family protein, contains Pfam profile: PF00153 mitochondrial carrier proteins [ 15231083 NP_188659.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7057198 CHROM_POS_END:7058722 } -=| MIDDLE_POINT:7057960 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.89 68 160 234 1 981 348 XLS3_Contig2186 AT2G02410 expressed protein [ AT2G02410 30677998 NP_178346.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:632712 CHROM_POS_END:634612 } -=| MIDDLE_POINT:633662 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.85 77 155 201 1 921 308 XLS3_Contig2187 AT5G58230 WD-40 repeat protein (MSI1), contains 6 WD-40 repeats (PF0400) [ 15237140 NP_200631.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:23573338 CHROM_POS_END:23575220 } -=| MIDDLE_POINT:23574279 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.51 58 100 172 1 893 424 XLS3_Contig2188 AT5G12250 tubulin beta-6 chain (TUB6), nearly identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis thaliana} [ 15239914 NP_196786.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3961318 CHROM_POS_END:3962972 } -=| MIDDLE_POINT:3962145 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 93 340 363 1 1161 449 XLS3_Contig2189 AT3G63300 expressed protein [ AT3G63300 22331920 NP_191889.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:23396008 CHROM_POS_END:23398600 } -=| MIDDLE_POINT:23397304 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.78 57 169 293 1 916 498 XLS3_Contig2190 AT3G12120 omega-6 fatty acid desaturase, endoplasmic reticulum (FAD2) / delta-12 desaturase, identical to omega-6 fatty acid desaturase, endoplasmic reticulum (FAD2) SP:P46313 (Arabidopsis thaliana (Mouse-ear cress)) (Plant Cell 6:147-158(1994)) [ 15229956 NP_187819.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3860598 CHROM_POS_END:3861749 } -=| MIDDLE_POINT:3861173 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 58 169 291 1 895 383 XLS3_Contig2191 no_hits_found 0 0 XLS3_Contig2192 AT1G55915 expressed protein, similar to Hypothetical 30.6 kDa protein in ACT5-YCK1 intergenic region (Swiss-Prot:P38838) (Saccharomyces cerevisiae) [ 42562774 NP_564704.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20911328 CHROM_POS_END:20913094 } -=| MIDDLE_POINT:20912211 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.83 60 158 260 1 1008 404 XLS3_Contig2193 AT2G29690 anthranilate synthase, alpha subunit, component I-2 (ASA2), identical to SP|P32069 [ 15227604 NP_180530.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12700976 CHROM_POS_END:12703868 } -=| MIDDLE_POINT:12702422 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 62 185 295 1 977 621 XLS3_Contig2194 no_hits_found 0 0 XLS3_Contig2195 AT2G47790 transducin family protein / WD-40 repeat family protein, similar to WD-repeat protein 5 (SP:Q9UGP9) (Homo sapiens) [ 18407449 NP_566111.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19578172 CHROM_POS_END:19580016 } -=| MIDDLE_POINT:19579094 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 222 338 1 1091 392 XLS3_Contig2196 AT3G19240 expressed protein [ AT3G19240 15230321 NP_188555.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6664389 CHROM_POS_END:6666429 } -=| MIDDLE_POINT:6665409 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 253 322 1 1177 648 XLS3_Contig2197 AT4G02030 expressed protein, similar to expressed protein [Arabidopsis thaliana] (TAIR:At1g21170.1) [ 79460404 NP_192112.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:892262 CHROM_POS_END:897175 } -=| MIDDLE_POINT:894718 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 197 262 1 857 780 XLS3_Contig2198 AT5G23670 serine C-palmitoyltransferase (LCB2), identical to serine palmitoyltransferase (Arabidopsis thaliana) GI:9309380 [ 15237805 NP_197756.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7981892 CHROM_POS_END:7985040 } -=| MIDDLE_POINT:7983466 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 86 393 454 1 1514 489 XLS3_Contig2199 AT2G29900 presenilin family protein, similar to presenilin (Drosophila melanogaster) GI:2062395 [ 15227665 NP_180551.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12756914 CHROM_POS_END:12758107 } -=| MIDDLE_POINT:12757510 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.96 70 175 249 1 932 397 XLS3_Contig2200 AT1G06890 transporter-related, low similarity to SP|Q9NTN3 UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter {Homo sapiens}, SP|Q95YI5 UDP-sugar transporter UST74c {Drosophila melanogaster}, SP|Q18779 UDP-sugar transporter sqv-7 {Caenorhabditis elegans} [ 22329373 NP_172172.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2111727 CHROM_POS_END:2114037 } -=| MIDDLE_POINT:2112882 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 91 237 260 1 921 357 XLS3_Contig2201 AT4G19880 similar to expressed protein [Arabidopsis thaliana] (TAIR:At5g45020.1) [ 79325173 NP_001031671.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:10784701 CHROM_POS_END:10786386 } -=| MIDDLE_POINT:10785543 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 268 380 1 1343 382 XLS3_Contig2202 AT5G13420 transaldolase, putative, similar to transaldolase (Solanum tuberosum) gi|2078350|gb|AAB54016 [ 15240625 NP_196846.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4302083 CHROM_POS_END:4304215 } -=| MIDDLE_POINT:4303149 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 345 442 1 1718 438 XLS3_Contig2203 AT4G32760 similar to VHS domain-containing protein / GAT domain-containing protein [Arabidopsis thaliana] (TAIR:At3g08790.1) [ 79494763 NP_195002.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15799381 CHROM_POS_END:15803837 } -=| MIDDLE_POINT:15801609 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 175 244 1 970 675 XLS3_Contig2204 AT1G32500 ATP-binding-cassette transporter, putative, similar to ATP-binding-cassette transporter (ABC1) described in PMID:11156608 [ 18398463 NP_564404.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11750071 CHROM_POS_END:11751974 } -=| MIDDLE_POINT:11751022 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.68 57 128 223 1 863 475 XLS3_Contig2205 no_hits_found 0 0 XLS3_Contig2206 AT1G11910 aspartyl protease family protein, contains Pfam profiles: PF00026 eukaryotic aspartyl protease, PF03489 surfactant protein B, PF05184 saposin-like type B, region 1 [ 15221141 NP_172655.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4017117 CHROM_POS_END:4019872 } -=| MIDDLE_POINT:4018494 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.89 57 153 267 1 938 506 XLS3_Contig2207 AT2G19160 expressed protein, contains Pfam profile PF03267: Arabidopsis protein of unknown function, DUF266 [ 30680587 NP_849985.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8318003 CHROM_POS_END:8320677 } -=| MIDDLE_POINT:8319340 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.65 53 116 218 1 998 394 XLS3_Contig2208 AT5G64813 GTP-binding protein-related, contains weak similarity to Ras-related protein Rab-27A (Rab-27) (GTP-binding protein Ram) (Swiss-Prot:P51159) (Homo sapiens) [ 18424871 NP_568996.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:25928062 CHROM_POS_END:25929851 } -=| MIDDLE_POINT:25928956 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.85 79 147 184 1 915 342 XLS3_Contig2209 AT2G36460 fructose-bisphosphate aldolase, putative, similar to PIR|S65073 fructose-bisphosphate aldolase (EC 4.1.2.13) isoenzyme C-1, cytosolic (Oryza sativa) [ 15227981 NP_181187.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15304008 CHROM_POS_END:15305466 } -=| MIDDLE_POINT:15304737 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 84 226 266 1 931 358 XLS3_Contig2210 AT1G51610 cation efflux family protein / metal tolerance protein, putative (MTPc4), member of the cation diffusion facilitator (CDF) family, or cation efflux (CE) family, PMID:11500563 [ 18403602 NP_564594.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19140293 CHROM_POS_END:19143289 } -=| MIDDLE_POINT:19141791 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.74 67 142 210 1 912 457 XLS3_Contig2211 AT5G16290 acetolactate synthase small subunit, putative, similar to gi:5931761 from Nicotiana plumbaginifolia [ 15237321 NP_197133.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:5333877 CHROM_POS_END:5337390 } -=| MIDDLE_POINT:5335633 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.84 64 171 264 1 1013 477 XLS3_Contig2212 AT1G32860 glycosyl hydrolase family 17 protein, similar to beta-1,3-glucanase precursor GI:4097948 from (Oryza sativa) [ 30692765 NP_174563.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11907288 CHROM_POS_END:11908783 } -=| MIDDLE_POINT:11908035 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.82 47 153 320 1 1006 426 XLS3_Contig2213 AT2G20980 expressed protein [ AT2G20980 42569202 NP_179694.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9018735 CHROM_POS_END:9020937 } -=| MIDDLE_POINT:9019836 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.82 55 151 272 1 966 396 XLS3_Contig2214 AT5G37600 glutamine synthetase, putative, similar to glutamine synthetase, cytosolic isozyme (Glutamate-- ammonia ligase, GS1) (Lotus japonicus) SWISS-PROT:Q42899 [ 15240288 NP_198576.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14950804 CHROM_POS_END:14952886 } -=| MIDDLE_POINT:14951845 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 88 311 353 1 1349 356 XLS3_Contig2215 AT1G08660 glycosyl transferase family 29 protein / sialyltransferase family protein, contains Pfam profile: PF00777 sialyltransferase (Glycosyltransferase family 29) [ 30680753 NP_850940.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2757119 CHROM_POS_END:2759680 } -=| MIDDLE_POINT:2758399 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.99 74 174 234 1 1000 474 XLS3_Contig2216 AT5G19120 expressed protein, low similarity to extracellular dermal glycoprotein EDGP precursor (Daucus carota) GI:285741, SP|P13917 Basic 7S globulin precursor {Glycine max} [ 15239656 NP_197413.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6414587 CHROM_POS_END:6415747 } -=| MIDDLE_POINT:6415167 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.42 37 108 285 1 911 386 XLS3_Contig2217 AT2G27680 aldo/keto reductase family protein, contains Pfam profile PF00248: oxidoreductase, aldo/keto reductase family [ 18401495 NP_565656.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11811058 CHROM_POS_END:11813042 } -=| MIDDLE_POINT:11812050 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 211 272 1 938 384 XLS3_Contig2218 AT2G12400 expressed protein [ AT2G12400 30678837 NP_178935.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5012226 CHROM_POS_END:5015222 } -=| MIDDLE_POINT:5013724 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 61 257 417 1 1429 541 XLS3_Contig2219 AT4G01320 CAAX protease, putative (STE24), contains Pfam domain, PF01435: Peptidase family M48 [ 18411603 NP_567212.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:545905 CHROM_POS_END:549002 } -=| MIDDLE_POINT:547453 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 287 345 1 1182 424 XLS3_Contig2220 AT3G20650 mRNA capping enzyme family protein, contains Pfam PF03291: mRNA capping enzyme, large subunit [ 42565060 NP_188701.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7221174 CHROM_POS_END:7223945 } -=| MIDDLE_POINT:7222559 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 186 226 1 901 370 XLS3_Contig2221 no_hits_found 0 0 XLS3_Contig2222 AT5G65250 expressed protein [ AT5G65250 18424929 NP_569009.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26095925 CHROM_POS_END:26097277 } -=| MIDDLE_POINT:26096601 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.33 46 78 168 1 927 300 XLS3_Contig2223 AT5G43990 SET domain-containing protein, identical to SET domain protein SUVR2 (Arabidopsis thaliana) GI:15290521 [ 42573567 NP_974880.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17715681 CHROM_POS_END:17718960 } -=| MIDDLE_POINT:17717320 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.25 44 64 143 1 979 740 XLS3_Contig2224 AT5G09300 2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative, similar to branched-chain alpha-keto acid dehydrogenase E1-alpha subunit (Gallus gallus) GI:12964598 [ 18415939 NP_568209.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2884283 CHROM_POS_END:2886798 } -=| MIDDLE_POINT:2885540 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.71 70 125 177 1 990 472 XLS3_Contig2225 AT5G23300 dihydroorotate dehydrogenase, mitochondrial / dihydroorotate oxidase / DHOdehase (PYRD), nearly identical to SP|P32746 Dihydroorotate dehydrogenase, mitochondrial precursor (EC 1.3.3.1) (Dihydroorotate oxidase) (DHOdehase) {Arabidopsis thaliana} [ 18420660 NP_568428.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7847795 CHROM_POS_END:7850246 } -=| MIDDLE_POINT:7849020 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.88 61 143 232 1 932 460 XLS3_Contig2226 AT4G23100 glutamate-cysteine ligase / gamma-glutamylcysteine synthetase (GSH1), identical to glutamate-cysteine ligase SP:P46309 from (Arabidopsis thaliana) [ 15236390 NP_194041.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:12103469 CHROM_POS_END:12106762 } -=| MIDDLE_POINT:12105115 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.73 65 143 219 1 1010 522 XLS3_Contig2227 AT3G15010 RNA recognition motif (RRM)-containing protein, similar to UBP1 interacting protein 1a (Arabidopsis thaliana) GI:19574236 [ 15232459 NP_188119.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:5052851 CHROM_POS_END:5054065 } -=| MIDDLE_POINT:5053458 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.87 58 175 301 1 950 404 XLS3_Contig2228 AT5G42470 expressed protein, low similarity to BRE alpha b isoform (Homo sapiens) GI:16326573 [ 42568272 NP_199062.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16999593 CHROM_POS_END:17001966 } -=| MIDDLE_POINT:17000779 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.83 56 145 258 1 944 382 XLS3_Contig2229 AT4G38130 histone deacetylase (RPD3A), identical to SP|O22446 Histone deacetylase (HD) {Arabidopsis thaliana} [ 15233694 NP_195526.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17896487 CHROM_POS_END:17899051 } -=| MIDDLE_POINT:17897769 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 91 250 274 1 993 501 XLS3_Contig2230 AT2G24270 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative, similar to NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (NON-phosphorylating glyceraldehyde 3-phosphate [ 42570905 NP_973526.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:10334405 CHROM_POS_END:10336681 } -=| MIDDLE_POINT:10335543 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 90 424 470 1 1547 496 XLS3_Contig2231 no_hits_found 0 0 XLS3_Contig2232 AT4G35360 pantothenate kinase family protein, contains Pfam domain, PF01937: Protein of unknown function [ 18418688 NP_567984.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16812308 CHROM_POS_END:16814661 } -=| MIDDLE_POINT:16813484 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 305 365 1 1419 367 XLS3_Contig2233 AT5G22740 glycosyl transferase family 2 protein, similar to beta-(1-3)-glucosyl transferase GB:AAC62210 GI:3687658 from (Bradyrhizobium japonicum), cellulose synthase from Agrobacterium tumeficiens (gi:710492) and Agrobacterium radiobacter (gi:710493) [ 15242959 NP_197666.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7555382 CHROM_POS_END:7559869 } -=| MIDDLE_POINT:7557625 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 317 390 1 1487 534 XLS3_Contig2234 AT5G54890 expressed protein [ AT5G54890 15240416 NP_200300.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22310572 CHROM_POS_END:22312135 } -=| MIDDLE_POINT:22311353 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.79 56 79 140 1 928 358 XLS3_Contig2235 AT2G46420 expressed protein [ AT2G46420 18407071 NP_566074.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19061964 CHROM_POS_END:19063903 } -=| MIDDLE_POINT:19062933 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.7 72 129 178 1 919 363 XLS3_Contig2236 AT2G01190 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein, Pfam profile PF00564: PB1 domain [ 18379168 NP_565256.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:115022 CHROM_POS_END:117295 } -=| MIDDLE_POINT:116158 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.53 44 131 297 1 900 720 XLS3_Contig2237 AT3G48090 disease resistance protein (EDS1), identical to disease resistance protein/lipase homolog EDS1 GI:4454567 [ 15228337 NP_190392.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17766538 CHROM_POS_END:17768677 } -=| MIDDLE_POINT:17767607 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.36 35 91 254 1 918 623 XLS3_Contig2238 AT5G40010 AAA-type ATPase family protein, contains Pfam profile: ATPase family PF00004 [ 15242536 NP_198817.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16037446 CHROM_POS_END:16038990 } -=| MIDDLE_POINT:16038218 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 60 300 493 1 1477 514 XLS3_Contig2239 AT3G01470 homeobox-leucine zipper protein 5 (HAT5) / HD-ZIP protein 5 / HD-ZIP protein (HB-1), identical to homeobox-leucine zipper protein HAT5 (HD-ZIP protein 5) (HD-ZIP protein ATHB-1) GB:Q02283 (Arabidopsis thaliana) [ 15232122 NP_186796.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:182655 CHROM_POS_END:184041 } -=| MIDDLE_POINT:183348 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.34 60 72 120 1 869 272 XLS3_Contig2240 AT2G35720 DNAJ heat shock N-terminal domain-containing protein, low similarity to SP|O54946 DnaJ homolog subfamily B member 6 (Heat shock protein J2) Mus musculus [ 30686523 NP_181115.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15023962 CHROM_POS_END:15026945 } -=| MIDDLE_POINT:15025453 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.88 67 156 231 1 984 538 XLS3_Contig2241 AT4G37880 expressed protein [ AT4G37880 15235735 NP_195501.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17810177 CHROM_POS_END:17811343 } -=| MIDDLE_POINT:17810760 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.65 51 131 255 1 931 388 XLS3_Contig2242 AT2G46620 AAA-type ATPase family protein, contains Pfam profile: ATPase family PF00004 [ 30690453 NP_182185.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19146141 CHROM_POS_END:19147616 } -=| MIDDLE_POINT:19146878 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.8 52 147 281 1 918 491 XLS3_Contig2243 AT4G37110 expressed protein [ AT4G37110 42567480 NP_195428.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17484337 CHROM_POS_END:17486191 } -=| MIDDLE_POINT:17485264 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.83 60 154 255 1 961 417 XLS3_Contig2244 AT3G07790 DGCR14-related, similar to DGCR14 protein (DiGeorge syndrome critical region 14) (ES2 protein) (Swiss-Prot:Q96DF8) (Homo sapiens) [ 15231871 NP_187436.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2487497 CHROM_POS_END:2489023 } -=| MIDDLE_POINT:2488260 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.84 64 172 265 1 977 508 XLS3_Contig2245 AT5G60550 protein kinase family protein, contains protein kinase domain, Pfam:PF00069 [ 22327987 NP_200863.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:24357361 CHROM_POS_END:24359582 } -=| MIDDLE_POINT:24358471 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.51 65 97 147 1 1064 407 XLS3_Contig2246 AT4G27680 MSP1 protein, putative / intramitochondrial sorting protein, putative, similar to Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4) (Saccharomyces cerevisiae) [ 15234242 NP_194498.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:13821269 CHROM_POS_END:13823089 } -=| MIDDLE_POINT:13822179 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 186 230 1 907 398 XLS3_Contig2247 AT3G12120 omega-6 fatty acid desaturase, endoplasmic reticulum (FAD2) / delta-12 desaturase, identical to omega-6 fatty acid desaturase, endoplasmic reticulum (FAD2) SP:P46313 (Arabidopsis thaliana (Mouse-ear cress)) (Plant Cell 6:147-158(1994)) [ 15229956 NP_187819.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3860598 CHROM_POS_END:3861749 } -=| MIDDLE_POINT:3861173 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 173 252 1 880 383 XLS3_Contig2248 no_hits_found 0 0 XLS3_Contig2249 AT5G12330 lateral root primordium 1 (LRP1), identical to lateral root primordium 1 (LRP1) (Arabidopsis thaliana) GI:882341 [ 42573349 NP_974771.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:3987678 CHROM_POS_END:3989075 } -=| MIDDLE_POINT:3988376 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.4 50 95 190 1 1285 320 XLS3_Contig2250 AT1G44835 similar to 25.7 kDa protein [Cicer arietinum] (GB:CAB81546.1) [ 79319356 NP_001031149.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:16942349 CHROM_POS_END:16944777 } -=| MIDDLE_POINT:16943563 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.82 61 160 262 1 897 308 XLS3_Contig2251 AT1G15660 expressed protein, similar to CENPCA protein (GI:11863170) {Zea mays} [ 42562078 NP_173018.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5381225 CHROM_POS_END:5385052 } -=| MIDDLE_POINT:5383138 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.27 25 108 431 1 1380 705 XLS3_Contig2252 AT5G58260 expressed protein [ AT5G58260 15237153 NP_200634.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:23578301 CHROM_POS_END:23579155 } -=| MIDDLE_POINT:23578728 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.79 76 136 177 1 987 209 XLS3_Contig2253 AT3G47990 zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) [ 30692957 NP_190382.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17724352 CHROM_POS_END:17727036 } -=| MIDDLE_POINT:17725694 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 185 243 1 981 358 XLS3_Contig2254 AT5G46290 3-oxoacyl-(acyl-carrier-protein) synthase I, identical to Swiss-Prot:P52410 3-oxoacyl-(acyl-carrier-protein) synthase I, chloroplast precursor (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase I) (KAS I) (Arabidopsis thaliana) [ 15237422 NP_199441.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:18791666 CHROM_POS_END:18793856 } -=| MIDDLE_POINT:18792761 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 227 283 1 956 473 XLS3_Contig2255 AT2G26250 beta-ketoacyl-CoA synthase family (FIDDLEHEAD) (FDH), identical to GB:AJ010713 (fiddlehead protein) [ 15225270 NP_180193.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11177877 CHROM_POS_END:11180137 } -=| MIDDLE_POINT:11179007 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 222 275 1 864 550 XLS3_Contig2256 AT1G34020 transporter-related, low similarity to UDP-sugar transporter (Drosophila melanogaster) GI:14971008, UDP-glucuronic acid transporter (Homo sapiens) GI:11463949 [ 18399097 NP_564433.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12367339 CHROM_POS_END:12368945 } -=| MIDDLE_POINT:12368142 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 86 183 211 1 945 335 XLS3_Contig2257 AT4G00550 UDP-galactose:MGDG galactosyltransferase 2 / digalactosyldiacylglycerol synthase 2 (DGD2), identical to digalactosyldiacylglycerol synthase (DGD2) GI:18141112 (Arabidopsis thaliana) [ 22328179 NP_191964.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:238154 CHROM_POS_END:240019 } -=| MIDDLE_POINT:239086 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 176 248 1 964 473 XLS3_Contig2258 AT2G25737 expressed protein, contains Pfam profile: PF01925 domain of unknown function DUF81 [ 30682879 NP_850068.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10984252 CHROM_POS_END:10986755 } -=| MIDDLE_POINT:10985503 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 324 468 1 1698 476 XLS3_Contig2259 AT3G50050 aspartyl protease family protein, contains Pfam PF00026: Eukaryotic aspartyl protease [ 15229663 NP_190574.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18565121 CHROM_POS_END:18568098 } -=| MIDDLE_POINT:18566609 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.67 61 126 204 1 1016 632 XLS3_Contig2260 AT3G49730 pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat [ 15229604 NP_190542.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18453433 CHROM_POS_END:18458631 } -=| MIDDLE_POINT:18456032 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.74 56 162 285 1 1013 1184 XLS3_Contig2261 AT1G78760 F-box family protein, contains F-box domain Pfam:PF00646 [ AT1G78760 15219162 NP_177997.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:29620067 CHROM_POS_END:29621631 } -=| MIDDLE_POINT:29620849 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.24 28 82 289 1 1118 452 XLS3_Contig2262 AT4G05320 polyubiquitin (UBQ10) (SEN3), senescence-associated protein [ 30680052 NP_849299.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2718557 CHROM_POS_END:2719951 } -=| MIDDLE_POINT:2719254 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 99 274 275 1 935 464 XLS3_Contig2263 AT3G02710 nuclear associated protein-related / NAP-related, similar to Nuclear associated protein (NAP) (NYD-SP19) (Swiss-Prot:Q8WYA6) (Homo sapiens) [ 30678649 NP_186920.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:583191 CHROM_POS_END:585787 } -=| MIDDLE_POINT:584489 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 191 275 1 875 529 XLS3_Contig2264 no_hits_found 0 0 XLS3_Contig2265 AT2G18510 pre-mRNA splicing factor, putative, similar to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA splicing factor SF3b 49 kDa subunit) {Homo sapiens} [ 15224186 NP_179441.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8038636 CHROM_POS_END:8040599 } -=| MIDDLE_POINT:8039617 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 235 291 1 881 363 XLS3_Contig2266 AT2G06005 expressed protein [ AT2G06005 18396221 NP_565332.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2332580 CHROM_POS_END:2336019 } -=| MIDDLE_POINT:2334299 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.81 67 128 189 1 935 355 XLS3_Contig2267 AT5G36930 disease resistance protein (TIR-NBS-LRR class), putative, domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein [ 30692996 NP_198509.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14585001 CHROM_POS_END:14589137 } -=| MIDDLE_POINT:14587069 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.4 38 77 200 1 814 1188 XLS3_Contig2268 AT1G32860 glycosyl hydrolase family 17 protein, similar to beta-1,3-glucanase precursor GI:4097948 from (Oryza sativa) [ 30692765 NP_174563.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11907288 CHROM_POS_END:11908783 } -=| MIDDLE_POINT:11908035 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 208 325 1 1146 426 XLS3_Contig2269 AT3G58040 seven in absentia (SINA) family protein, similar to siah-1A protein (Mus musculus) GI:297035 [ 15230936 NP_191363.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21500589 CHROM_POS_END:21502062 } -=| MIDDLE_POINT:21501325 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 181 232 1 897 308 XLS3_Contig2270 AT4G36530 hydrolase, alpha/beta fold family protein, low similarity to hydrolase (Sphingomonas sp.) GI:3426124 [ 15234433 NP_195371.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17240123 CHROM_POS_END:17241773 } -=| MIDDLE_POINT:17240948 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.84 65 155 238 1 888 378 XLS3_Contig2271 no_hits_found 0 0 XLS3_Contig2272 AT4G26270 phosphofructokinase family protein, similar to phosphofructokinase (Amycolatopsis methanolica) GI:17432243 [ 18416717 NP_567742.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13301103 CHROM_POS_END:13304039 } -=| MIDDLE_POINT:13302571 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.96 76 163 212 1 952 489 XLS3_Contig2273 AT1G47330 expressed protein, contains Pfam profile PF01595: Domain of unknown function [ 22330087 NP_175166.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17353589 CHROM_POS_END:17356179 } -=| MIDDLE_POINT:17354884 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 188 232 1 966 527 XLS3_Contig2274 AT5G55130 molybdenum cofactor synthesis protein 3 / molybdopterin synthase sulphurylase (CNX5), identical to SP|Q9ZNW0 Molybdenum cofactor synthesis protein 3 (Molybdopterin synthase sulfurylase) (MPT synthase sulfurylase) {Arabidopsis thaliana} [ 15240468 NP_200324.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:22390600 CHROM_POS_END:22393254 } -=| MIDDLE_POINT:22391927 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 196 268 1 991 464 XLS3_Contig2275 AT2G45320 expressed protein [ AT2G45320 30689992 NP_850432.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18691256 CHROM_POS_END:18693181 } -=| MIDDLE_POINT:18692218 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.52 56 107 190 1 857 392 XLS3_Contig2276 AT2G19330 leucine-rich repeat family protein, contains leucine rich repeats, Pfam:PF00560 [ 15224761 NP_179523.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8380029 CHROM_POS_END:8381535 } -=| MIDDLE_POINT:8380782 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 61 197 322 1 990 380 XLS3_Contig2277 AT1G76490 similar to 3-hydroxy-3-methylglutaryl-CoA reductase 2 / HMG-CoA reductase 2 (HMGR2) [Arabidopsis thaliana] (TAIR:At2g17370.1) [ 79382641 NP_177775.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:28700695 CHROM_POS_END:28703100 } -=| MIDDLE_POINT:28701897 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.83 55 165 300 1 879 642 XLS3_Contig2278 AT3G02580 delta 7-sterol-C5-desaturase (STE1), identical to sterol-C5-desaturase GB:AAD12944 GI:4234768 from (Arabidopsis thaliana) [ 15232935 NP_186907.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:547055 CHROM_POS_END:548622 } -=| MIDDLE_POINT:547838 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 193 253 1 956 281 XLS3_Contig2279 AT1G22170 phosphoglycerate/bisphosphoglycerate mutase family protein, similar to SP|P31217 Phosphoglycerate mutase 1 (EC 5.4.2.1) {Escherichia coli O157:H7} [ 18395083 NP_564161.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7826592 CHROM_POS_END:7828044 } -=| MIDDLE_POINT:7827318 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 195 280 1 1237 334 XLS3_Contig2280 no_hits_found 0 0 XLS3_Contig2281 AT3G10500 no apical meristem (NAM) family protein, similar to to NAC2 (GI:645671) (Arabidopsis thaliana) [ 18398895 NP_566376.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3271723 CHROM_POS_END:3273892 } -=| MIDDLE_POINT:3272807 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.79 66 138 208 1 1146 549 XLS3_Contig2282 AT1G79900 mitochondrial substrate carrier family protein, contains Pfam profile: PF00153 mitochondrial carrier protein [ 15220023 NP_178108.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:30057417 CHROM_POS_END:30058492 } -=| MIDDLE_POINT:30057954 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.67 72 100 137 1 936 296 XLS3_Contig2283 AT5G38560 protein kinase family protein, contains protein kinase domain, Pfam:PF00069 [ 15240947 NP_198672.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15457074 CHROM_POS_END:15460237 } -=| MIDDLE_POINT:15458655 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.22 61 41 67 1 824 681 XLS3_Contig2284 AT2G16980 expressed protein [ AT2G16980 42570805 NP_973476.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7383458 CHROM_POS_END:7388026 } -=| MIDDLE_POINT:7385742 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.55 35 126 359 1 1184 461 XLS3_Contig2285 AT1G07010 calcineurin-like phosphoesterase family protein, contains Pfam profile: PF00149 calcineurin-like phosphoesterase [ 22329383 NP_172182.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2152948 CHROM_POS_END:2154967 } -=| MIDDLE_POINT:2153957 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 197 283 1 959 389 XLS3_Contig2286 AT2G46225 expressed protein [ AT2G46225 18407012 NP_566067.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18989186 CHROM_POS_END:18991147 } -=| MIDDLE_POINT:18990166 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.72 64 139 214 1 963 298 XLS3_Contig2287 AT1G31300 expressed protein, similar to hypothetical protein GB:AAF24587 GI:6692122 from (Arabidopsis thaliana) [ 18397885 NP_564377.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:11194289 CHROM_POS_END:11195936 } -=| MIDDLE_POINT:11195112 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.79 69 142 205 1 942 278 XLS3_Contig2288 AT5G41330 potassium channel tetramerisation domain-containing protein, contains Pfam profile PF02214: K+ channel tetramerisation domain [ 15237625 NP_198949.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16553680 CHROM_POS_END:16555056 } -=| MIDDLE_POINT:16554368 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.8 64 140 216 1 921 458 XLS3_Contig2289 AT1G13560 aminoalcoholphosphotransferase (AAPT1), identical to aminoalcoholphosphotransferase GI:3661593 from (Arabidopsis thaliana) [ 15222885 NP_172813.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4638831 CHROM_POS_END:4641688 } -=| MIDDLE_POINT:4640259 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 235 287 1 933 389 XLS3_Contig2290 AT2G30490 trans-cinnamate 4-monooxygenase / cinnamic acid 4-hydroxylase (C4H) (CA4H) / cytochrome P450 73 (CYP73) (CYP73A5), identical to SP|P92994| Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic acid 4-hydroxylase) (CA4H) (C4H) (P450C4H) (Cytochrome P450 73). {Arabidopsis thaliana} [ 15224514 NP_180607.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13000938 CHROM_POS_END:13002760 } -=| MIDDLE_POINT:13001849 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 230 268 1 914 505 XLS3_Contig2291 AT3G14420 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative, similar to (S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate oxidase, GOX) (Short chain alpha-hydroxy acid oxidase) (Spinacia oleracea) SWISS-PROT:P05414 [ 15231850 NP_188060.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4821811 CHROM_POS_END:4823906 } -=| MIDDLE_POINT:4822858 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 92 254 275 1 965 367 XLS3_Contig2292 AT1G71691 GDSL-motif lipase/hydrolase family protein, similar to family II lipases EXL3 GI:15054386, EXL1 GI:15054382 from (Arabidopsis thaliana) [ 42572069 NP_974125.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:26953057 CHROM_POS_END:26955142 } -=| MIDDLE_POINT:26954099 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.92 61 173 282 1 920 384 XLS3_Contig2293 no_hits_found 0 0 XLS3_Contig2294 AT3G46640 myb family transcription factor, contains Pfam profile: PF00249 myb-like DNA-binding domain [ 15232597 NP_190248.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17194233 CHROM_POS_END:17195204 } -=| MIDDLE_POINT:17194718 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.75 53 174 324 1 1395 323 XLS3_Contig2295 AT4G28510 prohibitin, putative, similar to SP|P24142 Prohibitin (B-cell receptor associated protein 32) (BAP 32) {Rattus norvegicus} [ 15235317 NP_194580.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14084976 CHROM_POS_END:14086378 } -=| MIDDLE_POINT:14085677 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 225 264 1 936 288 XLS3_Contig2296 AT1G35720 annexin 1 (ANN1), identical to annexin (AnnAt1) (Arabidopsis thaliana) GI:4959106 [ 15220216 NP_174810.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:13226516 CHROM_POS_END:13228151 } -=| MIDDLE_POINT:13227333 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 209 304 1 941 317 XLS3_Contig2297 AT3G02230 reversibly glycosylated polypeptide-1 (RGP1), identical to reversibly glycosylated polypeptide-1 (AtRGP) (Arabidopsis thaliana) GI:2317729 [ 15232865 NP_186872.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:415470 CHROM_POS_END:417311 } -=| MIDDLE_POINT:416390 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 87 249 283 1 910 357 XLS3_Contig2298 AT4G00090 transducin family protein / WD-40 repeat family protein, similar to Transducin beta-like 2 protein (WS beta-transducin repeats protein) (WS-betaTRP) (Williams-Beuren syndrome chromosome region 13 protein) (SP:Q9Y4P3) {Homo sapiens} [ 18411222 NP_567150.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:34234 CHROM_POS_END:36594 } -=| MIDDLE_POINT:35414 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 283 412 1 1307 430 XLS3_Contig2299 AT1G51110 plastid-lipid associated protein PAP / fibrillin family protein, similar to plastid-lipid associated protein PAP2 (Brassica rapa) GI:14248550 [ 30694898 NP_175522.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18939048 CHROM_POS_END:18941152 } -=| MIDDLE_POINT:18940100 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 196 269 1 1028 409 XLS3_Contig2300 AT4G04610 5'-adenylylsulfate reductase (APR1) / PAPS reductase homolog (PRH19), identical to 5'-adenylylsulfate reductase (Arabidopsis thaliana) GI:2738756 [ 15233591 NP_192370.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2325067 CHROM_POS_END:2326716 } -=| MIDDLE_POINT:2325891 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 338 431 1 1514 465 XLS3_Contig2301 AT3G57200 similar to GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana] (TAIR:At2g41450.1) [ 79446809 NP_191279.3 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21180392 CHROM_POS_END:21183082 } -=| MIDDLE_POINT:21181737 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 199 279 1 928 514 XLS3_Contig2302 AT4G19900 glycosyl transferase-related, contains Pfam profiles PF01535: PPR repeat, PF04572: Alpha 1,4-glycosyltransferase conserved region, PF04488: Glycosyltransferase sugar-binding region containing DXD motif [ 15235222 NP_193724.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:10786958 CHROM_POS_END:10791443 } -=| MIDDLE_POINT:10789200 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.69 50 145 289 1 896 1302 XLS3_Contig2303 AT1G33980 Smg-4/UPF3 family protein, contains Pfam PF03467: Smg-4/UPF3 family [ 30692963 NP_174660.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12351699 CHROM_POS_END:12354381 } -=| MIDDLE_POINT:12353040 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.65 69 120 172 1 943 482 XLS3_Contig2304 AT1G33540 serine carboxypeptidase S10 family protein, similar to GI:8777303 from (Arabidopsis thaliana) (DNA Res. 7 (1), 31-63 (2000)) [ 15217581 NP_174619.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12162329 CHROM_POS_END:12164680 } -=| MIDDLE_POINT:12163504 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.71 47 130 275 1 926 446 XLS3_Contig2305 AT1G04690 potassium channel protein, putative, nearly identical to K+ channel protein (Arabidopsis thaliana) GI:1063415 [ 15219795 NP_171963.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1313661 CHROM_POS_END:1315419 } -=| MIDDLE_POINT:1314540 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 245 286 1 918 328 XLS3_Contig2306 AT1G48880 similar to expressed protein [Arabidopsis thaliana] (TAIR:At3g06080.2) [ 79361624 NP_175319.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18084701 CHROM_POS_END:18086318 } -=| MIDDLE_POINT:18085509 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.59 71 98 137 1 1083 445 XLS3_Contig2307 AT3G01610 AAA-type ATPase family protein, contains Pfam domain, PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with diverse cellular 'A'ctivities) [ 30678379 NP_186810.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:231794 CHROM_POS_END:235064 } -=| MIDDLE_POINT:233429 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.41 35 105 295 1 959 820 XLS3_Contig2308 AT1G01300 aspartyl protease family protein, contains Pfam domain, PF00026: eukaryotic aspartyl protease [ 15223368 NP_171637.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:117065 CHROM_POS_END:118522 } -=| MIDDLE_POINT:117793 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.95 61 181 292 1 895 485 XLS3_Contig2309 AT1G71860 protein tyrosine phosphatase 1 (PTP1), identical to protein tyrosine phosphatase 1 GI:3170531 from (Arabidopsis thaliana) [ 15217598 NP_177331.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:27030528 CHROM_POS_END:27032337 } -=| MIDDLE_POINT:27031432 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.89 59 150 254 1 1043 340 XLS3_Contig2310 AT2G38550 expressed protein, contains Pfam profile PF03647: Uncharacterised protein family (UPF0136) [ 18404784 NP_565892.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16139256 CHROM_POS_END:16141307 } -=| MIDDLE_POINT:16140281 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.55 48 131 271 1 981 335 XLS3_Contig2311 AT2G33610 SWIRM domain-containing protein / DNA-binding family protein, contains similarity to SWI/SNF complex 170 KDa subunit (Homo sapiens) gi|1549241|gb|AAC50694 [ 30685774 NP_180919.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:14236099 CHROM_POS_END:14238225 } -=| MIDDLE_POINT:14237162 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.6 47 124 262 1 968 469 XLS3_Contig2312 AT3G63010 expressed protein, similar to PrMC3 (Pinus radiata) GI:5487873 [ 15229371 NP_191860.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:23300692 CHROM_POS_END:23301973 } -=| MIDDLE_POINT:23301332 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.94 72 167 230 1 1051 358 XLS3_Contig2313 AT2G02040 peptide transporter (PTR2-B) / oligopeptide transporter 1-1, putative (OPT1-1), identical to peptide transporter PTR2-B SP:P46032 from (Arabidopsis thaliana) [ 15226861 NP_178313.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:487541 CHROM_POS_END:489706 } -=| MIDDLE_POINT:488623 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.62 45 114 250 1 1088 585 XLS3_Contig2314 AT4G18440 adenylosuccinate lyase, putative / adenylosuccinase, putative, similar to SP|P25739 Adenylosuccinate lyase (EC 4.3.2.2) (Adenylosuccinase) {Escherichia coli} [ 22328773 NP_193579.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:10186396 CHROM_POS_END:10188843 } -=| MIDDLE_POINT:10187619 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.61 59 121 202 1 929 536 XLS3_Contig2315 AT2G29050 rhomboid family protein, contains PFAM domain PF01694, Rhomboid family [ 42569431 NP_180469.3 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12485322 CHROM_POS_END:12487198 } -=| MIDDLE_POINT:12486260 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.88 58 169 289 1 936 389 XLS3_Contig2316 AT5G42020 luminal binding protein 2 (BiP-2) (BP2), similar to SWISS-PROT: Q39043 [ 30693962 NP_851119.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:16824925 CHROM_POS_END:16827708 } -=| MIDDLE_POINT:16826316 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 91 512 559 1 2084 668 XLS3_Contig2317 AT5G56340 zinc finger (C3HC4-type RING finger) family protein, contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) [ 15241188 NP_200445.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22835480 CHROM_POS_END:22836670 } -=| MIDDLE_POINT:22836075 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.82 53 169 317 1 1081 396 XLS3_Contig2318 AT5G39090 transferase family protein, similar to anthocyanin 5-aromatic acyltransferase from Gentiana triflora GI:4185599, malonyl CoA:anthocyanin 5-O-glucoside-6'''-O-malonyltransferase from Perilla frutescens GI:17980232, Salvia splendens GI:17980234 [ 15241632 NP_198725.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15660840 CHROM_POS_END:15662186 } -=| MIDDLE_POINT:15661513 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.4 35 102 290 1 945 448 XLS3_Contig2319 AT4G10610 RNA-binding protein, putative [ AT4G10610 15235177 NP_192799.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:6557332 CHROM_POS_END:6559139 } -=| MIDDLE_POINT:6558235 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 201 288 1 1688 336 XLS3_Contig2320 AT1G11910 aspartyl protease family protein, contains Pfam profiles: PF00026 eukaryotic aspartyl protease, PF03489 surfactant protein B, PF05184 saposin-like type B, region 1 [ 15221141 NP_172655.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4017117 CHROM_POS_END:4019872 } -=| MIDDLE_POINT:4018494 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 175 264 1 903 506 XLS3_Contig2321 no_hits_found 0 0 XLS3_Contig2322 AT2G35940 homeodomain-containing protein, contains 'Homeobox' domain signature, Prosite:PS00027 [ 15227535 NP_181138.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:15096250 CHROM_POS_END:15098778 } -=| MIDDLE_POINT:15097514 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.21 37 45 119 1 1170 680 XLS3_Contig2323 AT3G03790 ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein, similar to hect domain and RLD 2 GB:NP_004658 (Homo sapiens) [ 42572237 NP_974213.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:963202 CHROM_POS_END:967864 } -=| MIDDLE_POINT:965533 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.71 48 153 316 1 948 1081 XLS3_Contig2324 AT1G66840 expressed protein, contains Pfam profile PF05701: Plant protein of unknown function (DUF827) [ 15219757 NP_176856.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:24937661 CHROM_POS_END:24939779 } -=| MIDDLE_POINT:24938720 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.4 28 85 295 1 1114 607 XLS3_Contig2325 AT3G48280 cytochrome P450, putative, nearly identical to cytochrome P450 71A25 (SP:Q9STK8) (Arabidopsis thaliana) [ 22331674 NP_680107.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17890579 CHROM_POS_END:17892149 } -=| MIDDLE_POINT:17891364 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.52 45 116 255 1 932 490 XLS3_Contig2326 AT1G61810 glycosyl hydrolase family 1 protein, contains Pfam PF00232 : Glycosyl hydrolase family 1 domain [ 15220627 NP_176374.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:22833700 CHROM_POS_END:22836478 } -=| MIDDLE_POINT:22835089 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.8 56 143 254 1 934 520 XLS3_Contig2327 AT1G34340 esterase/lipase/thioesterase family protein, similar to late embryogenesis abundant protein (EMB8) GI:1350544 SP|Q40863 from (Picea glauca) [ 42562518 NP_174694.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12530914 CHROM_POS_END:12534009 } -=| MIDDLE_POINT:12532461 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.83 55 146 263 1 923 530 XLS3_Contig2328 AT2G37400 chloroplast lumen common family protein, very similar to GI:6729507 (At5g02590) and GI:7413648 (At3g53560) (Arabidopsis thaliana) [ 18404409 NP_565860.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15703444 CHROM_POS_END:15704445 } -=| MIDDLE_POINT:15703944 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.58 50 133 266 1 912 333 XLS3_Contig2329 AT5G14550 expressed protein, contains Pfam profile PF03267: Arabidopsis protein of unknown function, DUF266 [ 42567851 NP_196959.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4691324 CHROM_POS_END:4693735 } -=| MIDDLE_POINT:4692529 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 63 206 325 1 1395 377 XLS3_Contig2330 AT1G04980 similar to thioredoxin family protein [Arabidopsis thaliana] (TAIR:At2g32920.1) [ 79336174 NP_171990.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1413868 CHROM_POS_END:1416119 } -=| MIDDLE_POINT:1414993 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 317 423 1 1505 447 XLS3_Contig2331 AT4G32600 zinc finger (C3HC4-type RING finger) family protein, low similarity to RING finger protein 38 (Homo sapiens) GI:21666412 [ 22329099 NP_194986.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15724016 CHROM_POS_END:15725743 } -=| MIDDLE_POINT:15724879 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.93 54 189 350 1 1409 453 XLS3_Contig2332 AT5G24870 zinc finger (C3HC4-type RING finger) family protein, similar to Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) [ 30689641 NP_568462.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:8545011 CHROM_POS_END:8546926 } -=| MIDDLE_POINT:8545968 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.5 35 166 473 1 1308 520 XLS3_Contig2333 AT5G15120 expressed protein [ AT5G15120 15242218 NP_197016.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4898817 CHROM_POS_END:4900354 } -=| MIDDLE_POINT:4899585 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.3 50 68 135 1 896 293 XLS3_Contig2334 AT3G51850 calcium-dependent protein kinase, putative / CDPK, putative, similar to calcium-dependent protein kinase (Arabidopsis thaliana) gi|836942|gb|AAA67655 [ 22331739 NP_190753.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19243644 CHROM_POS_END:19246503 } -=| MIDDLE_POINT:19245073 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 208 242 1 912 528 XLS3_Contig2335 AT1G56110 nucleolar protein Nop56, putative, similar to XNop56 protein (Xenopus laevis) GI:14799394 [ 15223458 NP_176007.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20988209 CHROM_POS_END:20990558 } -=| MIDDLE_POINT:20989383 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 381 493 1 1595 522 XLS3_Contig2336 AT2G17930 FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family protein, contains Pfam profiles PF02259 FAT domain, PF00454 Phosphatidylinositol 3- and 4-kinase, PF02260: FATC domain [ 15227924 NP_179383.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7791537 CHROM_POS_END:7809312 } -=| MIDDLE_POINT:7800424 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 86 312 360 1 1126 3795 XLS3_Contig2337 AT1G63690 protease-associated (PA) domain-containing protein, contains protease associated (PA) domain, Pfam:PF02225 [ 42571983 NP_974082.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:23622153 CHROM_POS_END:23625745 } -=| MIDDLE_POINT:23623949 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.97 70 172 244 1 999 540 XLS3_Contig2338 AT2G42780 expressed protein [ AT2G42780 18406058 NP_565984.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17808114 CHROM_POS_END:17809723 } -=| MIDDLE_POINT:17808918 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.54 49 108 217 1 1225 293 XLS3_Contig2339 AT5G57330 aldose 1-epimerase family protein, contains Pfam profile PF01263 Aldose 1-epimerase [ 15242099 NP_200543.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:23235618 CHROM_POS_END:23237890 } -=| MIDDLE_POINT:23236754 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 217 274 1 967 312 XLS3_Contig2340 AT3G51860 cation exchanger, putative (CAX3), similar to high affinity calcium antiporter CAX1 (Arabidopsis thaliana) gi|9256741|gb|AAB05913 [ 30693547 NP_190754.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19250435 CHROM_POS_END:19253496 } -=| MIDDLE_POINT:19251965 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 319 443 1 1446 459 XLS3_Contig2341 AT4G18840 pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat [ 15234044 NP_193619.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:10338730 CHROM_POS_END:10340367 } -=| MIDDLE_POINT:10339548 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.22 34 40 116 1 696 545 XLS3_Contig2342 AT4G31340 myosin heavy chain-related, contains weak similarity to Myosin heavy chain, nonmuscle type A (Cellular myosin heavy chain, type A) (Nonmuscle myosin heavy chain-A) (NMMHC-A) (Swiss-Prot:P35579) (Homo sapiens) [ 18417787 NP_567873.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:15205668 CHROM_POS_END:15208956 } -=| MIDDLE_POINT:15207312 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.65 45 130 287 1 931 437 XLS3_Contig2343 AT5G13000 glycosyl transferase family 48 protein, contains Pfam profile: PF02364 1,3-beta-glucan synthase [ 30684210 NP_196804.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4110680 CHROM_POS_END:4121205 } -=| MIDDLE_POINT:4115942 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.39 42 106 252 1 927 1889 XLS3_Contig2344 AT5G56500 similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:At1g26230.1) [ 79330970 NP_001032083.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:22891284 CHROM_POS_END:22894192 } -=| MIDDLE_POINT:22892738 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 209 267 1 907 597 XLS3_Contig2345 AT3G17770 dihydroxyacetone kinase family protein, contains Pfam domains, PF02733: DAK1 domain and PF02734: DAK2 domain [ 15229519 NP_188404.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6081979 CHROM_POS_END:6085963 } -=| MIDDLE_POINT:6083971 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 389 500 1 1647 595 XLS3_Contig2346 AT4G39090 cysteine proteinase RD19a (RD19A) / thiol protease, identical to cysteine proteinase RD19a, thiol protease SP:P43296, GI:435618 from (Arabidopsis thaliana) [ 18420375 NP_568052.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18215820 CHROM_POS_END:18217320 } -=| MIDDLE_POINT:18216570 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 220 299 1 898 368 XLS3_Contig2347 AT5G51180 expressed protein [ AT5G51180 30696012 NP_851167.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:20814586 CHROM_POS_END:20817155 } -=| MIDDLE_POINT:20815870 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 185 272 1 923 357 XLS3_Contig2348 AT1G09850 cysteine protease, papain-like (XBCP3), identical to papain-like cysteine peptidase XBCP3 GI:14600257 from (Arabidopsis thaliana) [ 18391078 NP_563855.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3201850 CHROM_POS_END:3203877 } -=| MIDDLE_POINT:3202863 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.7 47 138 289 1 1015 437 XLS3_Contig2349 AT3G23090 expressed protein [ AT3G23090 15228950 NP_188950.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8214540 CHROM_POS_END:8216990 } -=| MIDDLE_POINT:8215765 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.43 42 112 262 1 926 338 XLS3_Contig2350 AT2G37630 myb family transcription factor (MYB91), contains Pfam profile: PF00249 myb-like DNA-binding domain [ 15224328 NP_181299.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15788876 CHROM_POS_END:15789979 } -=| MIDDLE_POINT:15789427 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.93 47 186 391 1 1273 367 XLS3_Contig2351 AT1G79470 inosine-5'-monophosphate dehydrogenase, identical to inosine-5'-monophosphate dehydrogenase SP|P47996 {Arabidopsis thaliana} [ 15219385 NP_178065.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:29899665 CHROM_POS_END:29901554 } -=| MIDDLE_POINT:29900609 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.78 52 152 287 1 891 503 XLS3_Contig2352 AT3G20830 protein kinase family protein, contains protein kinase domain, Pfam:PF00069 [ 15232374 NP_188719.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7285030 CHROM_POS_END:7286256 } -=| MIDDLE_POINT:7285643 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.76 54 155 282 1 876 408 XLS3_Contig2353 AT3G04290 GDSL-motif lipase/hydrolase family protein, similar to family II lipases EXL3 GI:15054386, EXL1 GI:15054382, EXL2 GI:15054384 from (Arabidopsis thaliana) [ 15229265 NP_187079.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1133627 CHROM_POS_END:1136230 } -=| MIDDLE_POINT:1134928 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 191 267 1 942 366 XLS3_Contig2354 AT2G33330 33 kDa secretory protein-related, contains Pfam PF01657: Domain of unknown function, duplicated in 33 KDa secretory proteins [ 18403243 NP_565764.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14130258 CHROM_POS_END:14132105 } -=| MIDDLE_POINT:14131181 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.9 63 152 240 1 942 304 XLS3_Contig2355 AT5G10010 expressed protein [ AT5G10010 42567760 NP_196563.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3128099 CHROM_POS_END:3131453 } -=| MIDDLE_POINT:3129776 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.71 61 122 199 1 932 434 XLS3_Contig2356 AT2G27040 PAZ domain-containing protein / piwi domain-containing protein, similar to SP|Q9QZ81 Eukaryotic translation initiation factor 2C 2 {Rattus norvegicus} [ 18401305 NP_565633.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11543873 CHROM_POS_END:11548581 } -=| MIDDLE_POINT:11546227 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 328 423 1 1490 924 XLS3_Contig2357 AT4G00400 phospholipid/glycerol acyltransferase family protein [ AT4G00400 42566190 NP_191950.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:174312 CHROM_POS_END:176734 } -=| MIDDLE_POINT:175523 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 269 366 1 1251 500 XLS3_Contig2358 no_hits_found 0 0 XLS3_Contig2359 AT4G00620 tetrahydrofolate dehydrogenase/cyclohydrolase, putative, similar to SP|P07245 C-1-tetrahydrofolate synthase, cytoplasmic (C1-THF synthase) (Includes: Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5) [ 15236888 NP_191971.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:259265 CHROM_POS_END:260788 } -=| MIDDLE_POINT:260026 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.84 64 166 256 1 947 360 XLS3_Contig2360 AT3G52180 protein tyrosine phosphatase/kinase interaction sequence protein (PTPKIS1), identical to PTPKIS1 protein (Arabidopsis thaliana) GI:11595504 [ 18409505 NP_566960.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:19360862 CHROM_POS_END:19364437 } -=| MIDDLE_POINT:19362649 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.92 64 177 275 1 883 379 XLS3_Contig2361 AT2G18950 homogentisate phytylprenyltransferase family protein (HPT1) / tocopherol phytyltransferase family protein (TPT1), identical to gi:17104828 [ 30680535 NP_849984.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8214573 CHROM_POS_END:8217129 } -=| MIDDLE_POINT:8215851 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.79 62 157 251 1 1049 393 XLS3_Contig2362 AT1G67400 similar to phagocytosis and cell motility protein ELMO1-related [Arabidopsis thaliana] (TAIR:At2g44770.1) [ 79374282 NP_564897.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:25251762 CHROM_POS_END:25254327 } -=| MIDDLE_POINT:25253044 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.9 66 155 233 1 893 281 XLS3_Contig2363 AT5G07620 protein kinase family protein, contains protein kinase domain, Pfam:PF00069 [ 15240831 NP_196379.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2407402 CHROM_POS_END:2409067 } -=| MIDDLE_POINT:2408234 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.77 53 150 280 1 1057 359 XLS3_Contig2364 AT5G54290 cytochrome c biogenesis protein family, low similarity to cytochrome c biogenesis protein CcdA (Paracoccus pantotrophus) GI:11095328 [ 15239604 NP_200240.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22068323 CHROM_POS_END:22071149 } -=| MIDDLE_POINT:22069736 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.71 65 138 211 1 870 354 XLS3_Contig2365 AT3G54090 pfkB-type carbohydrate kinase family protein, contains Pfam profile: PF00294 pfkB family carbohydrate kinase [ 15232415 NP_190977.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20039123 CHROM_POS_END:20040813 } -=| MIDDLE_POINT:20039968 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 310 449 1 1608 471 XLS3_Contig2366 AT5G50260 cysteine proteinase, putative, similar to cysteine endopeptidase precursor CysEP GI:2944446 from (Ricinus communis) [ 18423124 NP_568722.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20472831 CHROM_POS_END:20474088 } -=| MIDDLE_POINT:20473459 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 163 242 1 890 361 XLS3_Contig2367 AT5G11000 expressed protein [ AT5G11000 15238921 NP_196661.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3479167 CHROM_POS_END:3480336 } -=| MIDDLE_POINT:3479751 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.63 47 134 282 1 937 389 XLS3_Contig2368 AT3G02290 zinc finger (C3HC4-type RING finger) family protein, contains zinc finger motif, C3HC4 type (RING finger) [ 18396135 NP_566169.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:459392 CHROM_POS_END:460695 } -=| MIDDLE_POINT:460043 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.49 52 107 205 1 944 231 XLS3_Contig2369 AT3G07870 F-box family protein, contains F-box domain Pfam:PF00646 [ 18398079 NP_566322.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2510877 CHROM_POS_END:2512130 } -=| MIDDLE_POINT:2511503 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.16 28 79 279 1 915 417 XLS3_Contig2370 AT2G42710 ribosomal protein L1 family protein [ AT2G42710 30689119 NP_850375.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17789429 CHROM_POS_END:17791907 } -=| MIDDLE_POINT:17790668 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.39 43 108 251 1 929 415 XLS3_Contig2371 AT1G20560 AMP-dependent synthetase and ligase family protein, similar to AMP-binding protein GI:1903034 from (Brassica napus) [ 18394877 NP_564116.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7119917 CHROM_POS_END:7121720 } -=| MIDDLE_POINT:7120818 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.95 49 169 344 1 1119 556 XLS3_Contig2372 AT1G47710 serpin, putative / serine protease inhibitor, putative, similar to phloem serpin-1 (Cucurbita maxima) GI:9937311 [ 15220298 NP_175202.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17560711 CHROM_POS_END:17562501 } -=| MIDDLE_POINT:17561606 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 61 185 300 1 1022 391 XLS3_Contig2373 AT1G54520 expressed protein [ AT1G54520 18404967 NP_564660.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20367232 CHROM_POS_END:20369541 } -=| MIDDLE_POINT:20368386 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.97 65 194 294 1 1177 391 XLS3_Contig2374 AT1G33980 Smg-4/UPF3 family protein, contains Pfam PF03467: Smg-4/UPF3 family [ 30692963 NP_174660.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12351699 CHROM_POS_END:12354381 } -=| MIDDLE_POINT:12353040 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.74 53 152 285 1 1161 482 XLS3_Contig2375 AT3G48670 XH/XS domain-containing protein / XS zinc finger domain-containing protein, contains Pfam domains PF03469: XH domain, PF03468: XS domain and PF03470: XS zinc finger domain [ 22331699 NP_190436.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:18042225 CHROM_POS_END:18044600 } -=| MIDDLE_POINT:18043412 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.84 57 150 263 1 992 647 XLS3_Contig2376 AT1G22410 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative, similar to 3-deoxy-D-arabino-heptulosonate 7-phosphate GI:170224 from (Nicotiana tabacum), SP|P21357 from Solanum tuberosum [ 15219878 NP_173657.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7912109 CHROM_POS_END:7914731 } -=| MIDDLE_POINT:7913420 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 182 261 1 950 527 XLS3_Contig2377 AT4G10790 UBX domain-containing protein, low similarity to SP|Q9UNN5 FAS-associated factor 1 (FAF1 protein) {Homo sapiens} [ 15236931 NP_192817.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6640748 CHROM_POS_END:6643031 } -=| MIDDLE_POINT:6641889 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.91 62 177 283 1 939 480 XLS3_Contig2378 AT5G05520 outer membrane OMP85 family protein, contains Pfam profile PF01103: outer membrane protein, OMP85 family [ 18414910 NP_568157.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1632913 CHROM_POS_END:1635105 } -=| MIDDLE_POINT:1634009 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.86 58 159 273 1 925 524 XLS3_Contig2379 AT1G51590 mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative, similar to mannosyl-oligosaccharide 1,2-alpha-mannosidase (Glycine max)(GI:6552504) [ 15217971 NP_175570.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:19131983 CHROM_POS_END:19135800 } -=| MIDDLE_POINT:19133891 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 355 463 1 1646 560 XLS3_Contig2380 AT5G54590 protein kinase family protein, contains eukaryotic protein kinase domain, INTERPRO:IPR000719 [ 30696480 NP_568809.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:22197706 CHROM_POS_END:22199924 } -=| MIDDLE_POINT:22198815 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.84 73 153 207 1 941 440 XLS3_Contig2381 AT5G55280 cell division protein FtsZ, chloroplast, putative (FTSZ), identical to SP|Q42545 Cell division protein ftsZ homolog, chloroplast precursor {Arabidopsis thaliana} [ 15240490 NP_200339.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:22437966 CHROM_POS_END:22439753 } -=| MIDDLE_POINT:22438859 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 322 388 1 1463 433 XLS3_Contig2382 AT4G29780 expressed protein [ AT4G29780 30688449 NP_567834.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:14579865 CHROM_POS_END:14581487 } -=| MIDDLE_POINT:14580676 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.49 40 126 312 1 873 540 XLS3_Contig2383 AT4G28220 NADH dehydrogenase-related, similar to 64 kDa mitochondrial NADH dehydrogenase (Neurospora crassa) GI:4753821, alternative NADH-dehydrogenase (Yarrowia lipolytica) GI:3718005 [ 18417151 NP_567801.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:13993084 CHROM_POS_END:13995657 } -=| MIDDLE_POINT:13994370 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 263 386 1 1231 571 XLS3_Contig2384 AT5G35830 ankyrin repeat family protein, contains ankyrin repeats, Pfam:PF00023 [ 15239209 NP_198432.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14017543 CHROM_POS_END:14018646 } -=| MIDDLE_POINT:14018094 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.23 44 56 127 1 877 282 XLS3_Contig2385 AT1G12840 vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3), identical to vacuolar ATP synthase subunit C SP:Q9SDS7 from (Arabidopsis thaliana) [ 18391442 NP_563916.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4375582 CHROM_POS_END:4378218 } -=| MIDDLE_POINT:4376900 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 219 277 1 1018 375 XLS3_Contig2386 AT3G46290 protein kinase, putative, similar to receptor-like protein kinase (Catharanthus roseus) gi|1644291|emb|CAA97692 [ 15231393 NP_190214.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17023994 CHROM_POS_END:17026486 } -=| MIDDLE_POINT:17025240 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.58 45 123 273 1 910 830 XLS3_Contig2387 AT1G64860 RNA polymerase sigma subunit SigA (sigA) / sigma factor 1 (SIG1), identical to sigma factor SigA (Arabidopsis thaliana) GI:5478439, sigma factor 1 (Arabidopsis thaliana) GI:2353171, plastid RNA polymerase sigma-subunit (Arabidopsis thaliana) GI:2398851 [ 15217767 NP_176666.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:24102160 CHROM_POS_END:24104409 } -=| MIDDLE_POINT:24103284 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.27 39 93 233 1 905 502 XLS3_Contig2388 AT3G58180 PBS lyase HEAT-like repeat-containing protein, contains Pfam profile: PF03130: PBS lyase HEAT-like repeat [ 18410896 NP_567062.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21555166 CHROM_POS_END:21556958 } -=| MIDDLE_POINT:21556062 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 231 298 1 1255 314 XLS3_Contig2389 AT1G71140 MATE efflux family protein, similar to ripening regulated protein DDTFR18 (Lycopersicon esculentum) GI:12231296 [ 15223961 NP_177270.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:26828424 CHROM_POS_END:26830410 } -=| MIDDLE_POINT:26829417 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.94 59 164 277 1 906 485 XLS3_Contig2390 AT4G14030 selenium-binding protein, putative, contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56) [ 15236385 NP_193139.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8098116 CHROM_POS_END:8100160 } -=| MIDDLE_POINT:8099138 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 257 341 1 1145 490 XLS3_Contig2391 AT3G02090 mitochondrial processing peptidase beta subunit, putative, similar to mitochondrial processing peptidase beta subunit, mitochondrial precursor, Beta-MPP (Human) SWISS-PROT:O75439 [ 30678485 NP_850500.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:365631 CHROM_POS_END:368541 } -=| MIDDLE_POINT:367086 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 362 504 1 1554 535 XLS3_Contig2392 AT5G34850 calcineurin-like phosphoesterase family protein, contains Pfam profile: PF00149 calcineurin-like phosphoesterase [ 15242870 NP_198334.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13125705 CHROM_POS_END:13128447 } -=| MIDDLE_POINT:13127076 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 332 452 1 1543 475 XLS3_Contig2393 AT5G53470 acyl-CoA binding protein, putative / ACBP, putative, similar to acyl-CoA binding protein 2 (Arabidopsis thaliana) gi|12039034|gb|AAG46057 [ 15238757 NP_200159.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21727723 CHROM_POS_END:21729617 } -=| MIDDLE_POINT:21728670 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 61 217 354 1 1615 338 XLS3_Contig2394 AT3G48990 AMP-dependent synthetase and ligase family protein, similar to peroxisomal-coenzyme A synthetase (FAT2) (gi:586339) from Saccharomyces cerevisiae [ 15229062 NP_190468.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18170016 CHROM_POS_END:18172279 } -=| MIDDLE_POINT:18171147 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 309 384 1 1415 514 XLS3_Contig2395 AT2G32910 expressed protein [ AT2G32910 42569577 NP_180850.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:13966762 CHROM_POS_END:13969066 } -=| MIDDLE_POINT:13967914 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.46 34 109 313 1 1670 691 XLS3_Contig2396 AT3G57050 cystathionine beta-lyase, chloroplast / beta-cystathionase / cysteine lyase (CBL), identical to SP|P53780 Cystathionine beta-lyase, chloroplast precursor (EC 4.4.1.8) (CBL) (Beta-cystathionase) (Cysteine lyase) {Arabidopsis thaliana} [ 15230203 NP_191264.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21122918 CHROM_POS_END:21125500 } -=| MIDDLE_POINT:21124209 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 193 258 1 935 464 XLS3_Contig2397 AT2G28390 SAND family protein, similar to Sand (GI:3928166) (Takifugu rubripes) [ 18401727 NP_029426.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12146913 CHROM_POS_END:12150452 } -=| MIDDLE_POINT:12148682 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 61 292 476 1 1512 607 XLS3_Contig2398 AT3G54000 expressed protein [ AT3G54000 18409968 NP_566992.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:20007735 CHROM_POS_END:20009175 } -=| MIDDLE_POINT:20008455 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.18 31 88 280 1 1035 352 XLS3_Contig2399 AT3G19320 leucine-rich repeat family protein, contains leucine-rich repeats, Pfam:PF00560 [ 15230349 NP_188563.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6696401 CHROM_POS_END:6698079 } -=| MIDDLE_POINT:6697240 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.89 54 169 308 1 1086 493 XLS3_Contig2400 AT1G60810 ATP citrate-lyase -related, similar to ATP citrate-lyase GI:949989 from (Rattus norvegicus) [ 15219818 NP_176280.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:22392356 CHROM_POS_END:22394658 } -=| MIDDLE_POINT:22393507 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 86 238 274 1 910 423 XLS3_Contig2401 no_hits_found 0 0 XLS3_Contig2402 AT3G51840 short-chain acyl-CoA oxidase, identical to Short-chain acyl CoA oxidase (Arabidopsis thaliana) GI:5478795 [ 15231059 NP_190752.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19236630 CHROM_POS_END:19239985 } -=| MIDDLE_POINT:19238307 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 216 276 1 953 436 XLS3_Contig2403 AT1G24130 transducin family protein / WD-40 repeat family protein, contains 7 WD-40 repeats (PF00400) [ 15221675 NP_173823.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8534172 CHROM_POS_END:8535419 } -=| MIDDLE_POINT:8534795 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.87 56 173 307 1 954 415 XLS3_Contig2404 AT1G60680 aldo/keto reductase family protein, contains Pfam profile PF00248: oxidoreductase, aldo/keto reductase family [ 42562842 NP_176267.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:22351489 CHROM_POS_END:22352901 } -=| MIDDLE_POINT:22352195 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.8 64 135 209 1 962 346 XLS3_Contig2405 AT2G23070 casein kinase II alpha chain, putative, similar to casein kinase II, alpha chain (CK II) (Zea mays) SWISS-PROT:P28523 [ 15227778 NP_179889.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9831242 CHROM_POS_END:9833951 } -=| MIDDLE_POINT:9832596 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 325 437 1 1510 432 XLS3_Contig2406 AT3G59690 calmodulin-binding family protein, similar to SF16 protein (Helianthus annuus) GI:560150 [ 15231733 NP_191528.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22060549 CHROM_POS_END:22062456 } -=| MIDDLE_POINT:22061502 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.71 47 156 326 1 1092 517 XLS3_Contig2407 AT2G39730 ribulose bisphosphate carboxylase/oxygenase activase / RuBisCO activase, identical to SWISS-PROT:P10896 ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase, RA)(Arabidopsis thaliana) [ 18405145 NP_565913.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:16578029 CHROM_POS_END:16580423 } -=| MIDDLE_POINT:16579226 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 228 285 1 907 474 XLS3_Contig2408 AT1G28090 polynucleotide adenylyltransferase family protein, low similarity to SP|P13685 Poly(A) polymerase (EC 2.7.7.19) {Escherichia coli O157:H7} [ 42562367 NP_174130.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9795813 CHROM_POS_END:9798878 } -=| MIDDLE_POINT:9797345 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.56 62 90 145 1 919 541 XLS3_Contig2409 AT1G34150 tRNA pseudouridine synthase family protein, similar to pseudouridine synthase 3 (Mus musculus) GI:9652099 [ 18399149 NP_564438.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12436064 CHROM_POS_END:12439215 } -=| MIDDLE_POINT:12437639 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.74 55 143 256 1 877 446 XLS3_Contig2410 AT3G58140 phenylalanyl-tRNA synthetase class IIc family protein, similar to phenylalanine-tRNA synthetase (Homo sapiens) GI:3983103 [ 18410886 NP_567061.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21540965 CHROM_POS_END:21543363 } -=| MIDDLE_POINT:21542164 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 195 280 1 938 429 XLS3_Contig2411 AT5G60820 zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) [ 15239441 NP_200890.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:24486862 CHROM_POS_END:24488121 } -=| MIDDLE_POINT:24487491 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.12 28 82 286 1 944 419 XLS3_Contig2412 AT5G05580 omega-3 fatty acid desaturase, chloroplast, temperature-sensitive (FAD8), identical to SP:48622 Temperature-sensitive omega-3 fatty acid desaturase, chloroplast precursor (EC 1.14.19.-) {Arabidopsis thaliana} [ 15239175 NP_196177.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1664332 CHROM_POS_END:1666346 } -=| MIDDLE_POINT:1665339 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 291 399 1 1295 435 XLS3_Contig2413 AT1G27210 expressed protein [ AT1G27210 18396241 NP_564273.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9455656 CHROM_POS_END:9457904 } -=| MIDDLE_POINT:9456780 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.72 53 142 265 1 937 625 XLS3_Contig2414 AT3G61590 F-box family protein, contains weak hit to Pfam PF00646: F-box domain [ 15233154 NP_191718.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22803889 CHROM_POS_END:22805124 } -=| MIDDLE_POINT:22804506 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.51 39 99 252 1 1031 411 XLS3_Contig2415 AT1G11360 universal stress protein (USP) family protein, contains Pfam PF00582: universal stress protein family domain [ 30682187 NP_563888.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:3822171 CHROM_POS_END:3822899 } -=| MIDDLE_POINT:3822535 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.8 65 158 241 1 875 242 XLS3_Contig2416 AT2G25620 protein phosphatase 2C, putative / PP2C, putative [ AT2G25620 15224766 NP_180133.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:10910232 CHROM_POS_END:10912056 } -=| MIDDLE_POINT:10911144 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.82 56 146 257 1 1158 392 XLS3_Contig2417 AT5G47580 expressed protein, strong similarity to unknown protein (pir||E71441) [ 15238136 NP_199569.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19312174 CHROM_POS_END:19314420 } -=| MIDDLE_POINT:19313297 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.65 39 135 338 1 1333 748 XLS3_Contig2418 no_hits_found 0 0 XLS3_Contig2419 AT1G07030 mitochondrial substrate carrier family protein, contains Pfam profile: PF00153 mitochondrial carrier protein [ 15222270 NP_172184.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2158630 CHROM_POS_END:2160523 } -=| MIDDLE_POINT:2159576 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 215 311 1 1138 326 XLS3_Contig2420 AT3G66658 betaine-aldehyde dehydrogenase, putative, similar to betaine-aldehyde dehydrogenase, chloroplast precursor (BADH) (Spinacia oleracea) SWISS-PROT:P17202 [ 42572293 NP_974242.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2095347 CHROM_POS_END:2099019 } -=| MIDDLE_POINT:2097183 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 215 259 1 888 596 XLS3_Contig2421 AT3G23770 glycosyl hydrolase family 17 protein, similar to A6 anther-specific protein SP:Q06915 (Arabidopsis thaliana) [ 15229514 NP_189019.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8565563 CHROM_POS_END:8567203 } -=| MIDDLE_POINT:8566383 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.87 55 169 306 1 933 476 XLS3_Contig2422 AT1G08550 violaxanthin de-epoxidase precursor, putative (AVDE1), similar to EST gb|N37612 [ 15223260 NP_172331.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2707465 CHROM_POS_END:2709390 } -=| MIDDLE_POINT:2708427 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.76 82 131 159 1 889 462 XLS3_Contig2423 AT3G06170 TMS membrane family protein / tumour differentially expressed (TDE) family protein, contains Pfam domain, PF03348: TMS membrane protein/tumour differentially expressed protein (TDE) [ 42563541 NP_187268.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1867526 CHROM_POS_END:1869744 } -=| MIDDLE_POINT:1868635 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 185 263 1 934 409 XLS3_Contig2424 AT1G69160 expressed protein [ AT1G69160 18409203 NP_564952.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:26003978 CHROM_POS_END:26004943 } -=| MIDDLE_POINT:26004460 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.21 32 80 245 1 1016 321 XLS3_Contig2425 AT5G52520 tRNA synthetase class II (G, H, P and S) family protein, similar to SP|P07814 Bifunctional aminoacyl-tRNA synthetase (Includes: Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase) [ 15237183 NP_200065.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21328338 CHROM_POS_END:21331101 } -=| MIDDLE_POINT:21329719 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 234 298 1 928 543 XLS3_Contig2426 AT1G25350 glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative, similar to tRNA-glutamine synthetase GI:2995454 from (Lupinus luteus) [ 22329783 NP_173906.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8889267 CHROM_POS_END:8894192 } -=| MIDDLE_POINT:8891729 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 267 313 1 940 795 XLS3_Contig2427 AT2G43650 Sas10/U3 ribonucleoprotein (Utp) family protein, contains Pfam profile PF04000: Sas10/Utp3 family [ 30689446 NP_850397.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18106507 CHROM_POS_END:18110224 } -=| MIDDLE_POINT:18108365 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.27 43 57 132 1 486 654 XLS3_Contig2428 no_hits_found 0 0 XLS3_Contig2429 AT4G18020 pseudo-response regulator 2 (APRR2) (TOC2), identical to pseudo-response regulator 2 GI:7576356 from (Arabidopsis thaliana) [ 18415009 NP_567548.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:10003750 CHROM_POS_END:10006694 } -=| MIDDLE_POINT:10005222 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.51 47 127 269 1 872 535 XLS3_Contig2430 AT1G47790 F-box family protein, contains Pfam:PF00646 F-box domain [ 15220964 NP_175213.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17602444 CHROM_POS_END:17603613 } -=| MIDDLE_POINT:17603028 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.13 24 62 254 1 839 389 XLS3_Contig2431 AT4G26100 casein kinase, putative, similar to casein kinase I, delta isoform (Arabidopsis thaliana) SWISS-PROT:P42158 [ 15236114 NP_194340.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:13227894 CHROM_POS_END:13230517 } -=| MIDDLE_POINT:13229205 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 93 260 278 1 952 450 XLS3_Contig2432 AT4G26990 expressed protein [ AT4G26990 22328960 NP_194429.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13551156 CHROM_POS_END:13554259 } -=| MIDDLE_POINT:13552707 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.31 31 99 315 1 1125 474 XLS3_Contig2433 no_hits_found 0 0 XLS3_Contig2434 AT3G10230 lycopene beta cyclase (LYC), identical to lycopene beta cyclase GI:1399183|GB:AAB53337 (Arabidopsis thaliana) [ 15228239 NP_187634.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3164345 CHROM_POS_END:3165850 } -=| MIDDLE_POINT:3165097 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.76 51 123 237 1 905 501 XLS3_Contig2435 AT5G53970 aminotransferase, putative, similar to nicotianamine aminotransferase from Hordeum vulgare (GI:6498122, GI:6469087) [ 15239521 NP_200208.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21927902 CHROM_POS_END:21929820 } -=| MIDDLE_POINT:21928861 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 191 273 1 947 414 XLS3_Contig2436 AT4G24830 arginosuccinate synthase family, contains Pfam profile: PF00764 arginosuccinate synthase [ 22328910 NP_194214.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12793095 CHROM_POS_END:12795867 } -=| MIDDLE_POINT:12794481 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 358 439 1 1482 494 XLS3_Contig2437 AT3G57150 dyskerin, putative / nucleolar protein NAP57, putative, similar to SP|P40615 Dyskerin (Nucleolar protein NAP57) {Rattus norvegicus} [ 15230232 NP_191274.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21165234 CHROM_POS_END:21166931 } -=| MIDDLE_POINT:21166082 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 220 264 1 1002 565 XLS3_Contig2438 AT5G65770 nuclear matrix constituent protein-related, low similarity to nuclear matrix constituent protein 1 (NMCP1) (Daucus carota) GI:2190187 [ 15239130 NP_201378.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:26328813 CHROM_POS_END:26332770 } -=| MIDDLE_POINT:26330791 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.83 56 154 272 1 898 1042 XLS3_Contig2439 AT5G57350 ATPase 3, plasma membrane-type / proton pump 3, nearly identical to SP|P20431 ATPase 3, plasma membrane-type (EC 3.6.3.6) (Proton pump 3) {Arabidopsis thaliana} [ 15242103 NP_200545.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:23248434 CHROM_POS_END:23253607 } -=| MIDDLE_POINT:23251020 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 86 359 415 1 1247 949 XLS3_Contig2440 AT1G03880 12S seed storage protein (CRB), identical to 12S seed storage protein, gi|808937 (SP|P15456) (Plant Mol Biol 11:805-820 (1988)) [ 15219582 NP_171884.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:985785 CHROM_POS_END:987915 } -=| MIDDLE_POINT:986850 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.56 42 99 231 1 917 455 XLS3_Contig2441 AT5G58430 exocyst subunit EXO70 family protein, leucine zipper-containing protein, Lycopersicon esculentum, PIR:S21495 [ 15237198 NP_200651.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:23638686 CHROM_POS_END:23640560 } -=| MIDDLE_POINT:23639623 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.77 60 147 244 1 820 624 XLS3_Contig2442 AT1G30360 early-responsive to dehydration stress protein (ERD4), nearly identical to ERD4 protein (early-responsive to dehydration stress) (Arabidopsis thaliana) GI:15375406 [ 18397470 NP_564354.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10715874 CHROM_POS_END:10718781 } -=| MIDDLE_POINT:10717327 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 63 398 627 1 1986 724 XLS3_Contig2443 AT5G45960 GDSL-motif lipase/hydrolase family protein [ AT5G45960 15237351 NP_199408.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18654401 CHROM_POS_END:18657546 } -=| MIDDLE_POINT:18655973 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.73 47 140 292 1 879 375 XLS3_Contig2444 AT5G06530 similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:At3g52310.1) [ 79597808 NP_850781.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1990061 CHROM_POS_END:1994606 } -=| MIDDLE_POINT:1992333 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 370 474 1 1745 751 XLS3_Contig2445 AT5G09850 transcription elongation factor-related, low similarity to SP|P10712 Transcription elongation factor S-II (Transcription elongation factor A) {Mus musculus} [ 18416107 NP_568218.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3063489 CHROM_POS_END:3065222 } -=| MIDDLE_POINT:3064355 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.45 50 93 184 1 888 353 XLS3_Contig2446 AT3G25110 acyl-(acyl carrier protein) thioesterase / acyl-ACP thioesterase / oleoyl-(acyl-carrier protein) hydrolase / S-acyl fatty acid synthase thioesterase, identical to acyl-(acyl carrier protein) thioesterase (Arabidopsis thaliana) GI:804946 [ 15230256 NP_189147.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9146596 CHROM_POS_END:9148280 } -=| MIDDLE_POINT:9147438 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.9 69 164 235 1 910 362 XLS3_Contig2447 AT1G10970 metal transporter, putative (ZIP4), similar to Zn and Cd transporter ZNT1 (Thlaspi caerulescens) gi|7381054|gb|AAF61374 [ 30682009 NP_172566.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3665201 CHROM_POS_END:3666933 } -=| MIDDLE_POINT:3666067 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.48 47 104 218 1 937 408 XLS3_Contig2448 AT2G17265 homoserine kinase (HSK), identical to homoserine kinase (Arabidopsis thaliana) gi|4927412|gb|AAD33097 [ 15227800 NP_179318.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7515688 CHROM_POS_END:7516800 } -=| MIDDLE_POINT:7516244 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.83 72 160 221 1 881 370 XLS3_Contig2449 AT1G07040 expressed protein [ AT1G07040 18390717 NP_563777.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2161224 CHROM_POS_END:2163034 } -=| MIDDLE_POINT:2162129 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 60 197 323 1 1092 371 XLS3_Contig2450 AT1G12200 flavin-containing monooxygenase family protein / FMO family protein, low similarity to FMO2 from Homo sapiens (SP|Q99518) [ 15221248 NP_172684.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4137625 CHROM_POS_END:4139833 } -=| MIDDLE_POINT:4138729 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.86 61 153 250 1 820 465 XLS3_Contig2451 AT1G05960 expressed protein, similar to hypothetical protein GB:AAF80120 GI:8810459 from (Arabidopsis thaliana ) [ 18390595 NP_563755.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1808477 CHROM_POS_END:1815059 } -=| MIDDLE_POINT:1811768 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.93 45 198 431 1 1317 982 XLS3_Contig2452 AT3G06720 importin alpha-1 subunit, putative (IMPA1), similar to importin alpha-1 subunit (Karyopherin alpha-1 subunit, KAP alpha) (Arabidopsis thaliana) SWISS-PROT:Q96321 [ 15230778 NP_187328.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2120565 CHROM_POS_END:2123561 } -=| MIDDLE_POINT:2122063 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 397 480 1 1493 532 XLS3_Contig2453 AT1G75330 ornithine carbamoyltransferase, chloroplast / ornithine transcarbamylase / OTCase (OTC), identical to SP|O50039 Ornithine carbamoyltransferase, chloroplast precursor (EC 2.1.3.3) (OTCase) (Ornithine transcarbamylase) {Arabidopsis thaliana} [ 15222192 NP_177667.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:28270118 CHROM_POS_END:28272044 } -=| MIDDLE_POINT:28271081 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 263 314 1 1508 375 XLS3_Contig2454 AT5G22620 phosphoglycerate/bisphosphoglycerate mutase family protein, weak similarity to SP|P15259 Phosphoglycerate mutase, muscle form (EC 5.4.2.1 {Homo sapiens} [ 15242927 NP_197654.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7517734 CHROM_POS_END:7520226 } -=| MIDDLE_POINT:7518980 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.96 77 164 212 1 899 482 XLS3_Contig2455 AT1G74910 ADP-glucose pyrophosphorylase family protein, contains Pfam profile PF00483: Nucleotidyl transferase [ 15222037 NP_177629.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:28139431 CHROM_POS_END:28142117 } -=| MIDDLE_POINT:28140774 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 84 233 276 1 1064 415 XLS3_Contig2456 AT3G03860 expressed protein [ AT3G03860 18396691 NP_566214.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:992472 CHROM_POS_END:994322 } -=| MIDDLE_POINT:993397 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.44 42 90 211 1 886 300 XLS3_Contig2457 AT4G12050 DNA-binding protein-related, contains Pfam domain PF03479: Domain of unknown function (DUF296), found in AT-hook motifs Pfam:PF02178 [ 15234404 NP_192942.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7220133 CHROM_POS_END:7221152 } -=| MIDDLE_POINT:7220642 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 60 207 345 1 1499 339 XLS3_Contig2458 AT1G67830 GDSL-motif lipase/hydrolase family protein, similar to early nodulin ENOD8 (Medicago sativa) GI:304037, elicitor-induced glycoprotein iEP4 (Daucus carota) GI:1911765, lanatoside 15'-O-acetylesterase (Digitalis lanata) GI:3688284 [ 15220550 NP_176949.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:25435368 CHROM_POS_END:25436635 } -=| MIDDLE_POINT:25436001 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.51 73 98 133 1 939 372 XLS3_Contig2459 AT5G17380 pyruvate decarboxylase family protein, similar to 2-hydroxyphytanoyl-CoA lyase (Homo sapiens) GI:6273457 [ 15237954 NP_197240.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5724922 CHROM_POS_END:5726722 } -=| MIDDLE_POINT:5725822 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 218 281 1 1093 572 XLS3_Contig2460 AT2G28760 NAD-dependent epimerase/dehydratase family protein, similar to UDP-glucuronic acid decarboxylase Uxs1p from Filobasidiella neoformans GI:14318327 [ 42570963 NP_973555.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:12343546 CHROM_POS_END:12345719 } -=| MIDDLE_POINT:12344632 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 89 203 228 1 856 343 XLS3_Contig2461 AT4G24690 ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein, contains Pfam profiles PF00627: Ubiquitin-associated (UBA)/TS-N domain, PF00569: Zinc finger ZZ type domain, PF00564: PB1 domain [ 15233935 NP_194200.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12741201 CHROM_POS_END:12744212 } -=| MIDDLE_POINT:12742706 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.32 55 72 130 1 881 704 XLS3_Contig2462 AT1G28210 DNAJ heat shock protein, putative, strong similarity to mitochondrial DnaJ protein (AtJ1) GI:564030 from (Arabidopsis thaliana) [ 15217871 NP_174142.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9854585 CHROM_POS_END:9859964 } -=| MIDDLE_POINT:9857274 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.38 57 67 116 1 776 427 XLS3_Contig2463 AT3G03080 NADP-dependent oxidoreductase, putative, similar to probable NADP-dependent oxidoreductase (zeta-crystallin homolog) P2 (SP|Q39173)(gi:886430), Arabidopsis thaliana [ 15228456 NP_186958.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:698537 CHROM_POS_END:700285 } -=| MIDDLE_POINT:699411 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.68 51 127 245 1 940 350 XLS3_Contig2464 AT2G16700 actin-depolymerizing factor 5 (ADF5), identical to SP|Q9ZNT3 Actin-depolymerizing factor 5 (ADF-5) (AtADF5) {Arabidopsis thaliana} [ 18398187 NP_565390.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7251799 CHROM_POS_END:7252549 } -=| MIDDLE_POINT:7252174 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.69 87 125 143 1 902 143 XLS3_Contig2465 AT3G55410 2-oxoglutarate dehydrogenase E1 component, putative [ AT3G55410 30694242 NP_191101.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20552874 CHROM_POS_END:20556705 } -=| MIDDLE_POINT:20554789 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 86 235 272 1 851 1017 XLS3_Contig2466 AT5G60640 thioredoxin family protein, similar to protein disulfide isomerase GI:5902592 from (Volvox carteri f. nagariensis), GI:2708314 from Chlamydomonas reinhardtii [ 30697404 NP_851234.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:24388367 CHROM_POS_END:24391219 } -=| MIDDLE_POINT:24389793 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.81 57 160 276 1 856 597 XLS3_Contig2467 AT1G08310 esterase/lipase/thioesterase family protein, contains Interpro entry IPR000379 [ 42561803 NP_172308.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2619131 CHROM_POS_END:2620335 } -=| MIDDLE_POINT:2619733 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.81 57 134 232 1 949 315 XLS3_Contig2468 AT3G52990 pyruvate kinase, putative, similar to pyruvate kinase, cytosolic isozyme (Glycine max) SWISS-PROT:Q42806 [ 18409740 NP_566976.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19660024 CHROM_POS_END:19663215 } -=| MIDDLE_POINT:19661619 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 225 272 1 915 527 XLS3_Contig2469 AT2G30990 similar to expressed protein [Arabidopsis thaliana] (TAIR:At1g29240.1) [ 79567094 NP_180656.3 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:13194853 CHROM_POS_END:13196838 } -=| MIDDLE_POINT:13195845 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.18 40 54 132 1 871 593 XLS3_Contig2470 AT5G42260 glycosyl hydrolase family 1 protein, contains Pfam PF00232 : Glycosyl hydrolase family 1 domain [ 15238331 NP_199041.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16915940 CHROM_POS_END:16917463 } -=| MIDDLE_POINT:16916701 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.84 54 152 279 1 910 507 XLS3_Contig2471 AT1G14570 UBX domain-containing protein, contains Pfam profiles PF00789: UBX domain, PF02809: Ubiquitin interaction motif [ 42571473 NP_973827.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4983765 CHROM_POS_END:4987187 } -=| MIDDLE_POINT:4985476 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.87 58 166 282 1 927 468 XLS3_Contig2472 AT3G16500 auxin-responsive AUX/IAA family protein, similar to SP|O24408|AXII_ARATH Auxin-responsive protein IAA18 (Indoleacetic acid-induced protein 18) {Arabidopsis thaliana} [ 15228226 NP_188271.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5612807 CHROM_POS_END:5614214 } -=| MIDDLE_POINT:5613510 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.16 41 52 125 1 1172 269 XLS3_Contig2473 AT5G03430 phosphoadenosine phosphosulfate (PAPS) reductase family protein, low similarity to SP|P38913 FAD synthetase (EC 2.7.7.2) {Saccharomyces cerevisiae} [ 18414227 NP_568117.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:849236 CHROM_POS_END:852866 } -=| MIDDLE_POINT:851051 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 180 226 1 963 497 XLS3_Contig2474 AT5G36110 cytochrome P450 family protein, similar to taxane 13-alpha-hydroxylase (GI:17148242) {Taxus cuspidata} [ 15239304 NP_198460.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:14212607 CHROM_POS_END:14214843 } -=| MIDDLE_POINT:14213725 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.53 33 121 358 1 1205 477 XLS3_Contig2475 AT4G30440 NAD-dependent epimerase/dehydratase family protein, similar to nucleotide sugar epimerase from Vibrio vulnificus GI:3093975 (PID:g3093975), WbnF (Escherichia coli) GI:5739472, CAPI protein {Staphylococcus aureus} SP|P39858 [ 15234745 NP_194773.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14881982 CHROM_POS_END:14883271 } -=| MIDDLE_POINT:14882626 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 309 386 1 1295 429 XLS3_Contig2476 AT1G04990 zinc finger (CCCH-type) family protein, contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) [ 42571337 NP_973759.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1419367 CHROM_POS_END:1421453 } -=| MIDDLE_POINT:1420410 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.7 47 136 287 1 1010 404 XLS3_Contig2477 AT3G02540 ubiquitin family protein, contains Pfam profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N domain [ 15232924 NP_186903.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:533102 CHROM_POS_END:536158 } -=| MIDDLE_POINT:534630 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 62 242 385 1 1103 419 XLS3_Contig2478 AT2G31955 molybdopterin biosynthesis protein, putative / molybdenum cofactor biosynthesis enzyme, putative, 3' fragment [ 42570346 NP_850177.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:13591712 CHROM_POS_END:13593561 } -=| MIDDLE_POINT:13592636 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 190 282 1 1145 390 XLS3_Contig2479 AT5G27640 similar to eukaryotic translation initiation factor 3 subunit 9, putative / eIF-3 eta, putative / eIF3b, putative [Arabidopsis thaliana] (TAIR:At5g25780.1) [ 79328836 NP_001031954.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9781210 CHROM_POS_END:9784762 } -=| MIDDLE_POINT:9782986 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 61 175 284 1 913 738 XLS3_Contig2480 AT1G58025 similar to DNA-binding bromodomain-containing protein [Arabidopsis thaliana] (TAIR:At3g52280.1) [ 79366430 NP_176101.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21461884 CHROM_POS_END:21465422 } -=| MIDDLE_POINT:21463653 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.41 41 121 294 1 936 573 XLS3_Contig2481 AT1G49740 expressed protein, similar to MAP3K-like protein kinase GB:CAB16796 GI:4006878 from (Arabidopsis thaliana) [ 18402763 NP_564553.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18411396 CHROM_POS_END:18413136 } -=| MIDDLE_POINT:18412266 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.98 62 162 258 1 877 359 XLS3_Contig2482 AT1G63900 zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) [ 30696917 NP_176574.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:23720719 CHROM_POS_END:23722749 } -=| MIDDLE_POINT:23721734 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 189 238 1 977 343 XLS3_Contig2483 AT1G80360 aminotransferase class I and II family protein, low similarity to GI:14278621 Aromatic Aminotransferase from Pyrococcus horikoshii [ 15220119 NP_178152.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:30213628 CHROM_POS_END:30215535 } -=| MIDDLE_POINT:30214581 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 207 273 1 1097 394 XLS3_Contig2484 AT1G74040 2-isopropylmalate synthase 1 (IMS1), identical to 2-isopropylmalate synthase (IMS1) (Arabidopsis thaliana) GI:12330687 [ 15221125 NP_177544.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:27845919 CHROM_POS_END:27849227 } -=| MIDDLE_POINT:27847573 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 201 284 1 925 631 XLS3_Contig2485 AT1G76520 auxin efflux carrier family protein, contains auxin efflux carrier domain, Pfam:PF03547 [ 18411126 NP_565133.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:28720278 CHROM_POS_END:28722183 } -=| MIDDLE_POINT:28721230 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.91 49 149 302 1 992 390 XLS3_Contig2486 AT5G05240 expressed protein, similar to unknown protein (gb AAD32815.2) [ 42567659 NP_196143.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1554024 CHROM_POS_END:1556231 } -=| MIDDLE_POINT:1555127 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.32 48 75 155 1 914 530 XLS3_Contig2487 AT3G44110 DNAJ heat shock protein, putative (J3), identical to AtJ3 (Arabidopsis thaliana) GI:2641638, strong similarity to several plant DnaJ proteins from PGR [ 15229874 NP_189997.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:15880102 CHROM_POS_END:15882046 } -=| MIDDLE_POINT:15881074 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 84 341 402 1 1370 420 XLS3_Contig2488 AT4G37070 patatin, putative, similar to patatin-like latex allergen (Hevea brasiliensis)(PMID:10589016) [ 30690843 NP_849511.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17464910 CHROM_POS_END:17467052 } -=| MIDDLE_POINT:17465981 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.97 58 168 287 1 920 414 XLS3_Contig2489 AT3G17810 dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein, low similarity to SP|Q12882 Dihydropyrimidine dehydrogenase (NADP+) precursor (EC 1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) {Homo sapiens} [ 15229529 NP_188408.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6094285 CHROM_POS_END:6096295 } -=| MIDDLE_POINT:6095290 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 208 263 1 1018 426 XLS3_Contig2490 AT5G11710 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related, contains Pfam PF01417: ENTH domain. ENTH (Epsin N-terminal homology) domain [ 22326733 NP_196732.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3772982 CHROM_POS_END:3776317 } -=| MIDDLE_POINT:3774649 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 57 286 497 1 1507 560 XLS3_Contig2491 AT5G01220 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase / sulfolipid synthase (SQD2), identical to GI:20302857 [ 30679163 NP_568085.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:86906 CHROM_POS_END:89884 } -=| MIDDLE_POINT:88395 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 219 329 1 1240 510 XLS3_Contig2492 AT4G05180 oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ2), identical to SP|Q41932 Oxygen-evolving enhancer protein 3-2, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) {Arabidopsis thaliana} [ 15234637 NP_192427.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2672091 CHROM_POS_END:2673168 } -=| MIDDLE_POINT:2672629 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.82 68 154 226 1 765 230 XLS3_Contig2493 AT1G63660 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative, similar to SP|P38625 GMP synthase (glutamine-hydrolyzing) (EC 6.3.5.2) (Glutamine amidotransferase) (GMP synthetase) {Saccharomyces cerevisiae} [ 15222505 NP_176553.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:23607790 CHROM_POS_END:23610743 } -=| MIDDLE_POINT:23609266 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 192 258 1 876 534 XLS3_Contig2494 AT1G52760 esterase/lipase/thioesterase family protein, low similarity to monoglyceride lipase from (Homo sapiens) GI:14594904, (Mus musculus) GI:2632162 [ 15219082 NP_175685.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19655046 CHROM_POS_END:19656244 } -=| MIDDLE_POINT:19655645 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.78 66 132 198 1 821 332 XLS3_Contig2495 AT4G29560 expressed protein [ AT4G29560 15233616 NP_194685.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14504427 CHROM_POS_END:14506005 } -=| MIDDLE_POINT:14505216 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.37 37 100 268 1 831 493 XLS3_Contig2496 AT1G67280 lactoylglutathione lyase, putative / glyoxalase I, putative, similar to putative lactoylglutathione lyase SP:Q39366, GI:2494843 from (Brassica oleracea) [ 15220397 NP_176896.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:25192226 CHROM_POS_END:25194210 } -=| MIDDLE_POINT:25193218 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 191 267 1 971 350 XLS3_Contig2497 AT3G23880 F-box family protein, contains F-box domain Pfam:PF00646 [ AT3G23880 15229536 NP_189030.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8622068 CHROM_POS_END:8623162 } -=| MIDDLE_POINT:8622615 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.18 27 71 258 1 1060 364 XLS3_Contig2498 AT1G11800 endonuclease/exonuclease/phosphatase family protein, contains Pfam profile PF03372: Endonuclease/Exonuclease/phosphatase family [ 30682419 NP_563894.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3985519 CHROM_POS_END:3987262 } -=| MIDDLE_POINT:3986390 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.27 43 74 170 1 976 441 XLS3_Contig2499 AT5G28500 expressed protein, predicted proteins, Arabidopsis thaliana and Synechocystis sp [ 15241839 NP_198202.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10477814 CHROM_POS_END:10479118 } -=| MIDDLE_POINT:10478466 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.8 52 158 299 1 1060 434 XLS3_Contig2500 AT4G27760 similar to oxidoreductase, putative [Arabidopsis thaliana] (TAIR:At5g53090.1) [ 79487049 NP_194506.4 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:13844157 CHROM_POS_END:13846569 } -=| MIDDLE_POINT:13845363 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 191 257 1 885 376 XLS3_Contig2501 AT1G29820 expressed protein [ AT1G29820 15220573 NP_174275.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10438203 CHROM_POS_END:10440609 } -=| MIDDLE_POINT:10439406 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.61 47 116 243 1 863 540 XLS3_Contig2502 AT4G26850 expressed protein [ AT4G26850 18416877 NP_567759.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13499268 CHROM_POS_END:13501151 } -=| MIDDLE_POINT:13500209 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 215 314 1 1412 442 XLS3_Contig2503 AT1G28110 serine carboxypeptidase S10 family protein, similar to H.vulgare gene encoding serine carboxypeptidase II, CP-MII GI:1731989 [ 18396647 NP_564298.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9804140 CHROM_POS_END:9806819 } -=| MIDDLE_POINT:9805479 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 61 276 451 1 1594 461 XLS3_Contig2504 AT3G19590 WD-40 repeat family protein / mitotic checkpoint protein, putative, contains 5 WD-40 repeats (PF00400) (1 weak) [ 18402300 NP_566644.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6805804 CHROM_POS_END:6808380 } -=| MIDDLE_POINT:6807092 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 201 250 1 900 340 XLS3_Contig2505 AT1G21060 expressed protein, contains Pfam profile PF04784: Protein of unknown function, DUF547 [ 18394945 NP_564131.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7371788 CHROM_POS_END:7374074 } -=| MIDDLE_POINT:7372931 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.55 42 138 322 1 1146 505 XLS3_Contig2506 AT4G17530 Ras-related GTP-binding protein, putative, very strong similarity to RAB1C (Lotus corniculatus var. japonicus) GI:1370166 [ 15236555 NP_193486.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9773734 CHROM_POS_END:9775437 } -=| MIDDLE_POINT:9774585 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.98 85 101 118 1 903 202 XLS3_Contig2507 AT3G07130 serine/threonine protein phosphatase family protein, contains similarity to purple acid phosphatase (Arabidopsis thaliana) gi|20257489|gb|AAM15914 [ 15231398 NP_187369.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2255769 CHROM_POS_END:2257987 } -=| MIDDLE_POINT:2256878 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 168 258 1 1125 532 XLS3_Contig2508 AT4G18550 lipase class 3 family protein, similar to lipase (Dianthus caryophyllus) GI:4103627 [ 15233922 NP_193590.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:10225017 CHROM_POS_END:10226873 } -=| MIDDLE_POINT:10225945 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.94 57 168 291 1 896 419 XLS3_Contig2509 AT3G55960 NLI interacting factor (NIF) family protein, contains Pfam profile PF03031: NLI interacting factor [ 15228783 NP_191155.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20771776 CHROM_POS_END:20773871 } -=| MIDDLE_POINT:20772823 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.88 66 171 259 1 1071 305 XLS3_Contig2510 AT5G46630 clathrin adaptor complexes medium subunit family protein, contains Pfam profile: PF00928 adaptor complexes medium subunit family [ 42573598 NP_974895.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:18937807 CHROM_POS_END:18940287 } -=| MIDDLE_POINT:18939047 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 96 248 258 1 941 441 XLS3_Contig2511 AT5G09680 cytochrome b5 domain-containing protein, flavohemoprotein b5+b5R, Homo sapiens, EMBL:AF169803 [ 15242486 NP_196530.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2999363 CHROM_POS_END:3000186 } -=| MIDDLE_POINT:2999774 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.51 56 100 176 1 969 211 XLS3_Contig2512 AT2G22490 cyclin delta-2 (CYCD2), identical to SP|P42752 Cyclin delta-2 {Arabidopsis thaliana} [ 15227224 NP_179835.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9561237 CHROM_POS_END:9562953 } -=| MIDDLE_POINT:9562095 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.46 45 98 216 1 915 361 XLS3_Contig2513 AT1G50010 tubulin alpha-2/alpha-4 chain (TUA2), identical to tubulin alpha-2/alpha-4 chain SP|P29510 GB:P29510 from (Arabidopsis thaliana) [ 15222856 NP_175423.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18521405 CHROM_POS_END:18523397 } -=| MIDDLE_POINT:18522401 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 99 252 254 1 925 450 XLS3_Contig2514 no_hits_found 0 0 XLS3_Contig2515 AT1G76520 auxin efflux carrier family protein, contains auxin efflux carrier domain, Pfam:PF03547 [ 18411126 NP_565133.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:28720278 CHROM_POS_END:28722183 } -=| MIDDLE_POINT:28721230 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.71 47 124 259 1 912 390 XLS3_Contig2516 no_hits_found 0 0 XLS3_Contig2517 AT1G04870 protein arginine N-methyltransferase family protein, similar to SP|Q96LA8 Protein arginine N-methyltransferase 6 (EC 2.1.1.-) {Homo sapiens} [ 18390448 NP_563720.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1373484 CHROM_POS_END:1375597 } -=| MIDDLE_POINT:1374540 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 189 270 1 897 383 XLS3_Contig2518 AT1G75220 integral membrane protein, putative, strong similarity to integral membrane protein GI:1209756 from (Beta vulgaris) [ 15222158 NP_177658.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:28233073 CHROM_POS_END:28236267 } -=| MIDDLE_POINT:28234670 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 317 402 1 1294 487 XLS3_Contig2519 AT1G29260 peroxisomal targeting signal type 2 receptor (PEX7), identical to peroxisomal targeting signal type 2 receptor (Pex7p) (GI:9502414) (Arabidopsis thaliana) [ 15218882 NP_174220.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10224909 CHROM_POS_END:10225862 } -=| MIDDLE_POINT:10225385 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 228 286 1 904 317 XLS3_Contig2520 AT1G03475 coproporphyrinogen III oxidase, putative / coproporphyrinogenase, putative / coprogen oxidase, putative, similar to coproporphyrinogen III oxidase, chloroplast (precursor) from Glycine max (SP|P35055), Nicotiana tabacum (SP|Q42946), Hordeum vulgare (SP|Q42840), ESTs gb|AA586260 and dbj|D48620 [ 15218820 NP_171847.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:869458 CHROM_POS_END:871176 } -=| MIDDLE_POINT:870317 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 278 359 1 1539 362 XLS3_Contig2521 AT2G36880 S-adenosylmethionine synthetase, putative, similar to S-adenosylmethionine synthetase 3 (Methionine adenosyltransferase 3, AdoMet synthetase 3) (Lycopersicon esculentum) SWISS-PROT:P43282 [ 15228048 NP_181225.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15486800 CHROM_POS_END:15487972 } -=| MIDDLE_POINT:15487386 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 94 261 275 1 912 390 XLS3_Contig2522 AT3G13110 serine O-acetyltransferase (SAT-1), identical to serine acetyltransferase (Sat-1) GI:1184048 (Arabidopsis thaliana) [ 15231152 NP_187918.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4214946 CHROM_POS_END:4216121 } -=| MIDDLE_POINT:4215533 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 208 324 1 1200 391 XLS3_Contig2523 AT4G27120 expressed protein [ AT4G27120 18416928 NP_567767.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:13602216 CHROM_POS_END:13604233 } -=| MIDDLE_POINT:13603224 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.92 66 181 271 1 979 298 XLS3_Contig2524 no_hits_found 0 0 XLS3_Contig2525 AT5G03415 DPB-1 transcription factor, putative (DPB), similar to Swiss-Prot:Q14186 transcription factor DP-1 (Homo sapiens) [ 30680032 NP_850757.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:842841 CHROM_POS_END:845199 } -=| MIDDLE_POINT:844020 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.73 70 131 187 1 938 385 XLS3_Contig2526 AT3G52610 expressed protein [ AT3G52610 18409645 NP_566970.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19521491 CHROM_POS_END:19523525 } -=| MIDDLE_POINT:19522508 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.47 45 105 232 1 852 475 XLS3_Contig2527 AT1G32790 similar to RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:At4g10610.1) [ 79319100 NP_001031131.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:11875008 CHROM_POS_END:11877168 } -=| MIDDLE_POINT:11876088 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.63 52 141 268 1 1015 406 XLS3_Contig2528 AT3G02530 chaperonin, putative, similar to SWISS-PROT:P80317- T-complex protein 1, zeta subunit (TCP-1-zeta) (Mus musculus) [ 15232923 NP_186902.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:528813 CHROM_POS_END:532464 } -=| MIDDLE_POINT:530638 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 94 240 255 1 881 535 XLS3_Contig2529 AT1G35190 oxidoreductase, 2OG-Fe(II) oxygenase family protein, low similarity to hyoscyamine 6-dioxygenase hydroxylase from Hyoscyamus niger (GB:P24397)(SP|P24397), Atropa belladona (gi:4996123) [ 15219523 NP_174753.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12890522 CHROM_POS_END:12892610 } -=| MIDDLE_POINT:12891566 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 195 268 1 892 329 XLS3_Contig2530 AT5G12840 CCAAT-binding transcription factor (CBF-B/NF-YA) family protein, contains Pfam profile: PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B [ 18416875 NP_568282.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4051150 CHROM_POS_END:4052964 } -=| MIDDLE_POINT:4052057 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.5 49 113 228 1 1002 272 XLS3_Contig2531 AT1G33540 serine carboxypeptidase S10 family protein, similar to GI:8777303 from (Arabidopsis thaliana) (DNA Res. 7 (1), 31-63 (2000)) [ 15217581 NP_174619.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12162329 CHROM_POS_END:12164680 } -=| MIDDLE_POINT:12163504 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.7 45 130 287 1 869 446 XLS3_Contig2532 AT5G22750 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein, similar to SP|P36607 DNA repair protein rad8 {Schizosaccharomyces pombe} [ 15242960 NP_197667.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7565377 CHROM_POS_END:7570874 } -=| MIDDLE_POINT:7568125 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.71 49 154 309 1 1876 1029 XLS3_Contig2533 AT1G60420 DC1 domain-containing protein, contains Pfam domain PF03107: DC1 domain [ 18406743 NP_564756.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22265643 CHROM_POS_END:22267908 } -=| MIDDLE_POINT:22266775 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.51 42 107 254 1 881 578 XLS3_Contig2534 AT5G26742 similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:At3g22330.1) [ 79328737 NP_001031943.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9285543 CHROM_POS_END:9288874 } -=| MIDDLE_POINT:9287208 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 254 359 1 1058 748 XLS3_Contig2535 AT1G60810 ATP citrate-lyase -related, similar to ATP citrate-lyase GI:949989 from (Rattus norvegicus) [ 15219818 NP_176280.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:22392356 CHROM_POS_END:22394658 } -=| MIDDLE_POINT:22393507 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 87 248 285 1 939 423 XLS3_Contig2536 AT3G20015 similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:At3g18490.1) [ 79407941 NP_188636.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6978752 CHROM_POS_END:6980164 } -=| MIDDLE_POINT:6979458 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.76 54 146 267 1 1049 470 XLS3_Contig2537 AT3G10230 lycopene beta cyclase (LYC), identical to lycopene beta cyclase GI:1399183|GB:AAB53337 (Arabidopsis thaliana) [ 15228239 NP_187634.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3164345 CHROM_POS_END:3165850 } -=| MIDDLE_POINT:3165097 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 245 341 1 1371 501 XLS3_Contig2538 AT5G51080 RNase H domain-containing protein, low similarity to GAG-POL precursor (Oryza sativa (japonica cultivar-group)) GI:5902445 [ 30695999 NP_199921.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:20786248 CHROM_POS_END:20787901 } -=| MIDDLE_POINT:20787074 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.42 54 90 165 1 932 322 XLS3_Contig2539 AT2G36430 expressed protein, contains Pfam profile PF03140: Plant protein of unknown function [ 15227658 NP_181184.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15297290 CHROM_POS_END:15298636 } -=| MIDDLE_POINT:15297963 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.64 43 128 295 1 1008 448 XLS3_Contig2540 AT3G46100 histidyl-tRNA synthetase / histidine--tRNA ligase, identical to histidyl-tRNA synthetase (Arabidopsis thaliana) GI:3659909 [ 15231337 NP_190196.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16939429 CHROM_POS_END:16941969 } -=| MIDDLE_POINT:16940699 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 189 235 1 966 486 XLS3_Contig2541 AT1G58290 glutamyl-tRNA reductase 1 / GluTR (HEMA1), identical to glutamyl-tRNA reductase 1, chloroplast (SP|P42804) [ 15217924 NP_176125.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21627693 CHROM_POS_END:21629716 } -=| MIDDLE_POINT:21628704 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.84 69 170 245 1 1108 543 XLS3_Contig2542 AT2G17220 protein kinase, putative, similar to protein kinase APK1A (Arabidopsis thaliana) Swiss-Prot:Q06548 [ 18398350 NP_565408.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7494948 CHROM_POS_END:7496850 } -=| MIDDLE_POINT:7495899 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 258 401 1 1308 414 XLS3_Contig2543 AT1G51730 RWD domain-containing protein, contains Pfam profile PF05773: RWD domain [ 15218023 NP_175584.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19190480 CHROM_POS_END:19192306 } -=| MIDDLE_POINT:19191393 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.36 72 73 101 1 924 252 XLS3_Contig2544 AT4G30810 serine carboxypeptidase S10 family protein, similar to serine-type carboxypeptidase (SP:P55748) (Hordeum vulgare) [ 18417667 NP_567854.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15003480 CHROM_POS_END:15006023 } -=| MIDDLE_POINT:15004751 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 165 244 1 859 479 XLS3_Contig2545 AT4G18270 glycosyl transferase family 4 protein, contains Pfam profile PF00953: Glycosyl transferase [ 15236826 NP_193561.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:10099375 CHROM_POS_END:10101908 } -=| MIDDLE_POINT:10100641 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.11 51 38 74 1 1222 313 XLS3_Contig2546 AT5G66190 ferredoxin--NADP(+) reductase, putative / adrenodoxin reductase, putative, strong similarity to Ferredoxin--NADP reductase, chloroplast precursor (EC 1.18.1.2) (FNR) from {Pisum sativum} SP|P10933, {Mesembryanthemum crystallinum} SP|P41343, {Spinacia oleracea} SP|P00455 [ 15239282 NP_201420.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26468429 CHROM_POS_END:26470238 } -=| MIDDLE_POINT:26469333 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 277 352 1 1180 360 XLS3_Contig2547 AT3G15610 transducin family protein / WD-40 repeat family protein, contains 7 WD-40 repeats (PF00400) [ 18400838 NP_566519.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5291083 CHROM_POS_END:5292803 } -=| MIDDLE_POINT:5291943 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.7 90 122 135 1 834 341 XLS3_Contig2548 AT1G03900 expressed protein [ AT1G03900 18379172 NP_563693.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:991251 CHROM_POS_END:992851 } -=| MIDDLE_POINT:992051 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.83 81 154 189 1 879 272 XLS3_Contig2549 AT5G27740 expressed protein [ AT5G27740 15241031 NP_198126.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9823835 CHROM_POS_END:9826873 } -=| MIDDLE_POINT:9825354 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 238 284 1 940 354 XLS3_Contig2550 AT4G26270 phosphofructokinase family protein, similar to phosphofructokinase (Amycolatopsis methanolica) GI:17432243 [ 18416717 NP_567742.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13301103 CHROM_POS_END:13304039 } -=| MIDDLE_POINT:13302571 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.72 75 125 165 1 929 489 XLS3_Contig2551 no_hits_found 0 0 XLS3_Contig2552 AT5G02070 protein kinase-related, contains eukaryotic protein kinase domain, INTERPRO:IPR000719 [ 15241674 NP_195827.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:405892 CHROM_POS_END:408217 } -=| MIDDLE_POINT:407054 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.68 45 127 278 1 816 657 XLS3_Contig2553 AT4G25330 expressed protein [ AT4G25330 30686844 NP_194263.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12957844 CHROM_POS_END:12958693 } -=| MIDDLE_POINT:12958268 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.22 36 69 188 1 1520 229 XLS3_Contig2554 AT2G30880 pleckstrin homology (PH) domain-containing protein, contains Pfam profile PF00169: PH domain [ 30684745 NP_850155.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:13150003 CHROM_POS_END:13152795 } -=| MIDDLE_POINT:13151399 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 199 273 1 885 504 XLS3_Contig2555 AT4G30440 NAD-dependent epimerase/dehydratase family protein, similar to nucleotide sugar epimerase from Vibrio vulnificus GI:3093975 (PID:g3093975), WbnF (Escherichia coli) GI:5739472, CAPI protein {Staphylococcus aureus} SP|P39858 [ 15234745 NP_194773.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14881982 CHROM_POS_END:14883271 } -=| MIDDLE_POINT:14882626 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.88 72 160 222 1 871 429 XLS3_Contig2556 AT1G13900 calcineurin-like phosphoesterase family protein, contains Pfam profile: PF00149 calcineurin-like phosphoesterase [ 15222978 NP_172843.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4753491 CHROM_POS_END:4755551 } -=| MIDDLE_POINT:4754521 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 218 286 1 1661 656 XLS3_Contig2557 AT4G35070 expressed protein [ AT4G35070 30690197 NP_195233.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16694493 CHROM_POS_END:16695392 } -=| MIDDLE_POINT:16694942 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.25 29 77 259 1 1153 265 XLS3_Contig2558 AT1G63610 expressed protein [ AT1G63610 42571975 NP_974078.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:23587338 CHROM_POS_END:23589262 } -=| MIDDLE_POINT:23588300 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.75 60 161 264 1 897 341 XLS3_Contig2559 AT1G71696 carboxypeptidase D, putative, similar to carboxypeptidase D (Anas platyrhynchos) gi|2789654|gb|AAB96915 [ 42572071 NP_974126.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:26970658 CHROM_POS_END:26974026 } -=| MIDDLE_POINT:26972342 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 189 289 1 908 491 XLS3_Contig2560 AT3G13235 ubiquitin family protein, contains INTERPRO:IPR000626 ubiquitin domain [ 18399933 NP_566451.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4271499 CHROM_POS_END:4274355 } -=| MIDDLE_POINT:4272927 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 211 275 1 900 414 XLS3_Contig2561 AT5G16290 acetolactate synthase small subunit, putative, similar to gi:5931761 from Nicotiana plumbaginifolia [ 15237321 NP_197133.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:5333877 CHROM_POS_END:5337390 } -=| MIDDLE_POINT:5335633 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.61 77 88 114 1 903 477 XLS3_Contig2562 AT4G24220 expressed protein, protein induced upon wounding - Arabidopsis thaliana, PID:e257749 [ 15233747 NP_194153.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12565229 CHROM_POS_END:12566484 } -=| MIDDLE_POINT:12565856 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.65 44 137 305 1 928 388 XLS3_Contig2563 AT1G75380 wound-responsive protein-related, similar to wound inducive gene GI:8096273 from (Nicotiana tabacum) [ 15222221 NP_177671.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:28285450 CHROM_POS_END:28287292 } -=| MIDDLE_POINT:28286371 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.75 68 146 214 1 918 325 XLS3_Contig2564 AT2G26350 zinc-binding peroxisomal integral membrane protein (PEX10), identical to zinc-binding peroxisomal integral membrane protein GI:4337011 from (Arabidopsis thaliana) [ 18401101 NP_565621.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11224845 CHROM_POS_END:11227493 } -=| MIDDLE_POINT:11226169 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.89 64 130 203 1 920 381 XLS3_Contig2565 AT3G22370 alternative oxidase 1a, mitochondrial (AOX1A), identical to GB:Q39219 (SP|Q39219) from (Arabidopsis thaliana) [ 15228734 NP_188876.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7906897 CHROM_POS_END:7908423 } -=| MIDDLE_POINT:7907660 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 184 275 1 897 354 XLS3_Contig2566 AT1G34040 alliinase family protein, contains Pfam profiles: PF04864 allinase C-terminal domain, PF04863 alliinase EGF-like domain [ 15218475 NP_174666.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12374413 CHROM_POS_END:12376159 } -=| MIDDLE_POINT:12375286 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.7 50 112 224 1 923 457 XLS3_Contig2567 AT1G29670 GDSL-motif lipase/hydrolase family protein, similar to family II lipase EXL1 GI:15054382 from (Arabidopsis thaliana) [ 15220514 NP_174260.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10375829 CHROM_POS_END:10377703 } -=| MIDDLE_POINT:10376766 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 206 304 1 993 363 XLS3_Contig2568 AT3G10500 no apical meristem (NAM) family protein, similar to to NAC2 (GI:645671) (Arabidopsis thaliana) [ 18398895 NP_566376.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3271723 CHROM_POS_END:3273892 } -=| MIDDLE_POINT:3272807 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 44 221 493 1 1581 549 XLS3_Contig2569 AT2G43210 UBX domain-containing protein, contains Pfam profile PF00789: UBX domain [ 30689298 NP_850390.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17968019 CHROM_POS_END:17970637 } -=| MIDDLE_POINT:17969328 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.58 37 136 363 1 963 531 XLS3_Contig2570 AT2G20860 lipoic acid synthase (LIP1), identical to gi:3928758 contains Pfam profile PF04055: radical SAM domain protein [ 15226412 NP_179682.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8986717 CHROM_POS_END:8988064 } -=| MIDDLE_POINT:8987390 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 237 296 1 952 374 XLS3_Contig2571 AT5G59250 sugar transporter family protein, similar to D-xylose-H+ symporter from Lactobacillus brevis GI:2895856, sugar-porter family protein 2 (Arabidopsis thaliana) GI:14585701 [ 42568650 NP_200733.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:23921184 CHROM_POS_END:23924079 } -=| MIDDLE_POINT:23922631 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 282 409 1 1383 558 XLS3_Contig2572 AT2G30700 expressed protein [ AT2G30700 30684693 NP_850153.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13089110 CHROM_POS_END:13091461 } -=| MIDDLE_POINT:13090285 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.56 52 119 225 1 1017 480 XLS3_Contig2573 AT1G47670 amino acid transporter family protein, similar to lysine and histidine specific transporter GI:2576361 from (Arabidopsis thaliana) [ 15220283 NP_175198.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17539274 CHROM_POS_END:17541926 } -=| MIDDLE_POINT:17540600 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 89 275 306 1 958 519 XLS3_Contig2574 AT4G33950 protein kinase, putative, similar to abscisic acid-activated protein kinase (Vicia faba) gi|6739629|gb|AAF27340 [ 18418337 NP_567945.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16272369 CHROM_POS_END:16274662 } -=| MIDDLE_POINT:16273515 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 92 230 249 1 1319 362 XLS3_Contig2575 AT1G55110 zinc finger (C2H2 type) family protein, contains Pfam domain, PF00096: Zinc finger, C2H2 type [ 22330257 NP_175907.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20564073 CHROM_POS_END:20566292 } -=| MIDDLE_POINT:20565182 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.91 53 178 335 1 1050 455 XLS3_Contig2576 AT3G10330 transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2), identical to SP|Q9SS44 Transcription initiation factor IIB-2 (General transcription factor TFIIB-2) (AtTFIIB2) {Arabidopsis thaliana} [ 15228267 NP_187644.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3199912 CHROM_POS_END:3201647 } -=| MIDDLE_POINT:3200779 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 91 212 232 1 911 312 XLS3_Contig2577 AT2G17030 F-box family protein, similar to hypothetical protein GB:AAB81667 [ 18398287 NP_565401.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7406190 CHROM_POS_END:7407732 } -=| MIDDLE_POINT:7406961 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.62 45 146 318 1 997 407 XLS3_Contig2578 no_hits_found 0 0 XLS3_Contig2579 AT1G10820 expressed protein, similar to hypothetical protein GB:AAB71979 [ 42571433 NP_973807.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:3601438 CHROM_POS_END:3604651 } -=| MIDDLE_POINT:3603044 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.51 44 118 267 1 1694 258 XLS3_Contig2580 AT3G63000 NPL4 family protein, contains Pfam domain, PF05021: NPL4 family [ 15229360 NP_191859.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:23294811 CHROM_POS_END:23296332 } -=| MIDDLE_POINT:23295571 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 175 258 1 955 413 XLS3_Contig2581 AT5G54190 protochlorophyllide reductase A, chloroplast / PCR A / NADPH-protochlorophyllide oxidoreductase A (PORA), identical to SP:Q42536 protochlorophyllide reductase A, chloroplast precursor (EC 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) (Arabidopsis thaliana) [ 15239574 NP_200230.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:22008409 CHROM_POS_END:22009999 } -=| MIDDLE_POINT:22009204 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 221 304 1 902 405 XLS3_Contig2582 AT2G37550 arabidopsis pde1 suppressor 1 protein (ASP1), identical to arabidopsis pde1 suppressor 1 (Asp1) from GI:4519792 (Arabidopsis thaliana) [ 15224315 NP_181291.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:15762622 CHROM_POS_END:15764534 } -=| MIDDLE_POINT:15763578 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 194 282 1 909 456 XLS3_Contig2583 AT1G78570 NAD-dependent epimerase/dehydratase family protein, similar to dTDP-glucose 4,6-dehydratase from Aneurinibacillus thermoaerophilus GI:16357461, RmlB from Leptospira borgpetersenii GI:4234803 [ 15218420 NP_177978.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:29555003 CHROM_POS_END:29557100 } -=| MIDDLE_POINT:29556051 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.18 49 53 107 1 882 669 XLS3_Contig2584 AT4G17430 expressed protein, weak similarity to CigA protein (Mucor circinelloides) GI:9717020 [ 15236071 NP_193473.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9725213 CHROM_POS_END:9726813 } -=| MIDDLE_POINT:9726013 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.84 56 159 283 1 885 507 XLS3_Contig2585 AT5G08080 syntaxin, putative (SYP132), similar to SP|Q9ZSD4 Syntaxin 121 (AtSYP121) (Syntaxin-related protein At-Syr1) {Arabidopsis thaliana} [ 18415701 NP_568187.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2588533 CHROM_POS_END:2591107 } -=| MIDDLE_POINT:2589820 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 187 239 1 976 304 XLS3_Contig2586 AT4G25770 expressed protein [ AT4G25770 30686992 NP_194307.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13117830 CHROM_POS_END:13119991 } -=| MIDDLE_POINT:13118910 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.98 57 190 331 1 1091 418 XLS3_Contig2587 AT1G76900 F-box family protein / tubby family protein, similar to Tubby protein (SP:P50586) {Mus musculus} [ 15223772 NP_177816.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:28887635 CHROM_POS_END:28889271 } -=| MIDDLE_POINT:28888453 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.82 74 152 203 1 918 455 XLS3_Contig2588 AT3G26900 shikimate kinase family protein, similar to shikimate kinase precursor GB:CAA45121 (Lycopersicon esculentum) [ 30688547 NP_189325.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9913551 CHROM_POS_END:9915661 } -=| MIDDLE_POINT:9914606 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.64 52 134 257 1 995 280 XLS3_Contig2589 AT4G16280 flowering time control protein / FCA gamma (FCA), identical to SP|O04425 Flowering time control protein FCA {Arabidopsis thaliana} [ 30683599 NP_849543.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9207180 CHROM_POS_END:9214428 } -=| MIDDLE_POINT:9210804 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.81 52 173 329 1 1003 747 XLS3_Contig2590 AT5G14780 formate dehydrogenase (FDH), identical to GI:7677266 [ AT5G14780 15241492 NP_196982.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4777046 CHROM_POS_END:4779193 } -=| MIDDLE_POINT:4778119 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 207 263 1 888 384 XLS3_Contig2591 AT4G10730 protein kinase family protein, contains protein kinase domain, Pfam:PF00069 [ 42566410 NP_192811.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6609789 CHROM_POS_END:6614782 } -=| MIDDLE_POINT:6612285 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 207 249 1 908 708 XLS3_Contig2592 AT5G53580 aldo/keto reductase family protein, contains Pfam profile PF00248: oxidoreductase, aldo/keto reductase family [ 30696358 NP_200170.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21782441 CHROM_POS_END:21784145 } -=| MIDDLE_POINT:21783293 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 209 267 1 1019 365 XLS3_Contig2593 AT4G11970 YT521-B-like family protein, contains Pfam profile PF04146: YT521-B-like family [ 42566517 NP_192934.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7181217 CHROM_POS_END:7182947 } -=| MIDDLE_POINT:7182082 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.77 54 151 275 1 883 444 XLS3_Contig2594 AT3G27230 expressed protein [ AT3G27230 18405276 NP_566813.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10055461 CHROM_POS_END:10056693 } -=| MIDDLE_POINT:10056077 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.96 68 176 256 1 943 410 XLS3_Contig2595 AT1G21200 expressed protein [ AT1G21200 18394964 NP_564136.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7421472 CHROM_POS_END:7422803 } -=| MIDDLE_POINT:7422137 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.53 56 106 186 1 944 443 XLS3_Contig2596 AT1G21450 scarecrow-like transcription factor 1 (SCL1), identical to scarecrow-like 1 GB:AAF21043 GI:6644390 from (Arabidopsis thaliana) [ 15218990 NP_173566.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7509710 CHROM_POS_END:7511491 } -=| MIDDLE_POINT:7510600 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 54 279 514 1 1802 593 XLS3_Contig2597 AT5G65940 3-hydroxyisobutyryl-coenzyme A hydrolase / CoA-thioester hydrolase (CHY1), identical to gi:8572760 [ 15239206 NP_201395.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:26394056 CHROM_POS_END:26396387 } -=| MIDDLE_POINT:26395221 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 210 301 1 958 378 XLS3_Contig2598 AT1G10740 expressed protein [ AT1G10740 15220205 NP_172544.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:3568344 CHROM_POS_END:3570467 } -=| MIDDLE_POINT:3569405 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.85 75 156 207 1 905 473 XLS3_Contig2599 AT5G25050 integral membrane transporter family protein, similar to biopterin transporter (GI:3377706) (Leishmania mexicana) [ 15238691 NP_197887.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8632025 CHROM_POS_END:8633831 } -=| MIDDLE_POINT:8632928 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.49 55 87 157 1 945 499 XLS3_Contig2600 AT5G11810 expressed protein [ AT5G11810 15239788 NP_196742.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3808740 CHROM_POS_END:3810441 } -=| MIDDLE_POINT:3809590 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.39 48 97 198 1 933 306 XLS3_Contig2601 AT5G06900 cytochrome P450 family protein [ AT5G06900 15240211 NP_196307.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2136161 CHROM_POS_END:2137926 } -=| MIDDLE_POINT:2137043 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.64 41 122 293 1 893 507 XLS3_Contig2602 AT4G24820 26S proteasome regulatory subunit, putative (RPN7), contains similarity to ubiquitin activating enzyme GI:3647283 from (Lycopersicon esculentum) [ 18416433 NP_567709.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:12790481 CHROM_POS_END:12792609 } -=| MIDDLE_POINT:12791545 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 241 291 1 953 387 XLS3_Contig2603 AT1G75380 wound-responsive protein-related, similar to wound inducive gene GI:8096273 from (Nicotiana tabacum) [ 15222221 NP_177671.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:28285450 CHROM_POS_END:28287292 } -=| MIDDLE_POINT:28286371 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.7 67 136 202 1 968 325 XLS3_Contig2604 AT2G30110 ubiquitin activating enzyme 1 (UBA1), E1 [ AT2G30110 18402264 NP_565693.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12859709 CHROM_POS_END:12864446 } -=| MIDDLE_POINT:12862077 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 365 471 1 1422 1080 XLS3_Contig2605 AT1G62360 homeobox protein SHOOT MERISTEMLESS (STM), identical to homeobox protein SHOOT MERISTEMLESS (STM) SP:Q38874 from (Arabidopsis thaliana) [ 15220767 NP_176426.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:23062461 CHROM_POS_END:23065387 } -=| MIDDLE_POINT:23063924 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.83 52 177 339 1 1041 382 XLS3_Contig2606 AT5G36180 serine carboxypeptidase S10 family protein, similar to serine carboxypeptidase I precursor (SP:P37890) (Oryza sativa) [ 22327401 NP_198467.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:14256428 CHROM_POS_END:14259092 } -=| MIDDLE_POINT:14257760 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.75 49 131 267 1 923 441 XLS3_Contig2607 AT3G48000 aldehyde dehydrogenase (ALDH2), identical to aldehyde dehydrogenase (Arabidopsis thaliana) GI:8574427 [ 15228319 NP_190383.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17728067 CHROM_POS_END:17730828 } -=| MIDDLE_POINT:17729447 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 236 302 1 958 538 XLS3_Contig2608 AT4G32410 cellulose synthase, catalytic subunit, putative, similar to cellulose synthase-1 (gi:9622874) and -2 (gi:9622876) from Zea mays [ 15236786 NP_194967.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15641015 CHROM_POS_END:15646394 } -=| MIDDLE_POINT:15643704 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 89 329 369 1 1222 1081 XLS3_Contig2609 AT1G32640 basic helix-loop-helix (bHLH) protein (RAP-1), identical to bHLH protein GB:CAA67885 GI:1465368 from (Arabidopsis thaliana) [ 15223256 NP_174541.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11799022 CHROM_POS_END:11800893 } -=| MIDDLE_POINT:11799957 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.73 55 146 263 1 873 623 XLS3_Contig2610 AT3G52990 pyruvate kinase, putative, similar to pyruvate kinase, cytosolic isozyme (Glycine max) SWISS-PROT:Q42806 [ 18409740 NP_566976.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19660024 CHROM_POS_END:19663215 } -=| MIDDLE_POINT:19661619 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 296 360 1 1309 527 XLS3_Contig2611 AT2G46200 expressed protein, low similarity to ES18 (Mus musculus) GI:4416181 [ 30690256 NP_850448.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:18981937 CHROM_POS_END:18983719 } -=| MIDDLE_POINT:18982828 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.58 51 119 231 1 867 382 XLS3_Contig2612 AT2G25560 DNAJ heat shock N-terminal domain-containing protein, contains Pfam profile PF00226 DnaJ domain [ 15224749 NP_180126.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10888868 CHROM_POS_END:10890838 } -=| MIDDLE_POINT:10889853 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.54 46 109 234 1 926 656 XLS3_Contig2613 AT1G29150 26S proteasome regulatory subunit, putative (RPN6), similar to 19S proteosome subunit 9 GB:AAC34120 GI:3450889 from (Arabidopsis thaliana) [ 15218845 NP_174210.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10181226 CHROM_POS_END:10182485 } -=| MIDDLE_POINT:10181855 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 227 266 1 984 419 XLS3_Contig2614 AT4G01850 S-adenosylmethionine synthetase 2 (SAM2), identical to S-adenosylmethionine synthetase 2 (Methionine adenosyltransferase 2, AdoMet synthetase 2) (Arabidopsis thaliana) SWISS-PROT:P17562 [ 15234354 NP_192094.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:796298 CHROM_POS_END:797479 } -=| MIDDLE_POINT:796888 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 89 227 253 1 960 393 XLS3_Contig2615 AT1G80830 NRAMP metal ion transporter 1 (NRAMP1), identical to NRAMP1 protein (Arabidopsis thaliana) gi|7108911|gb|AAF36535 [ 15220858 NP_178198.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:30377958 CHROM_POS_END:30380536 } -=| MIDDLE_POINT:30379247 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 186 284 1 947 532 XLS3_Contig2616 AT2G39450 cation efflux family protein, contains cation efflux family protein domain, Pfam:PF01545 [ 15225468 NP_181477.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16478822 CHROM_POS_END:16480813 } -=| MIDDLE_POINT:16479817 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 214 288 1 927 394 XLS3_Contig2617 AT5G42750 expressed protein [ AT5G42750 18422246 NP_568610.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17160256 CHROM_POS_END:17161269 } -=| MIDDLE_POINT:17160762 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.3 41 96 232 1 889 337 XLS3_Contig2618 AT3G46980 similar to transporter-related [Arabidopsis thaliana] (TAIR:At2g38060.1) [ 79314547 NP_001030824.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17318279 CHROM_POS_END:17320884 } -=| MIDDLE_POINT:17319581 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.79 78 119 152 1 1052 534 XLS3_Contig2619 AT3G08580 ADP, ATP carrier protein 1, mitochondrial / ADP/ATP translocase 1 / adenine nucleotide translocator 1 (ANT1), identical to SWISS-PROT:P31167 ADP,ATP carrier protein 1 (Adenine nucleotide translocator 1) (Arabidopsis thaliana) [ 15231937 NP_187470.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2605712 CHROM_POS_END:2607036 } -=| MIDDLE_POINT:2606374 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 189 255 1 879 381 XLS3_Contig2620 AT5G61500 autophagy 3 (APG3), identical to autophagy 3 (Arabidopsis thaliana) GI:19912141 [ 18424474 NP_568934.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:24751442 CHROM_POS_END:24753937 } -=| MIDDLE_POINT:24752689 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 176 218 1 911 313 XLS3_Contig2621 AT1G62910 pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat [ 15221621 NP_176479.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:23302725 CHROM_POS_END:23306827 } -=| MIDDLE_POINT:23304776 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.45 37 98 261 1 927 1133 XLS3_Contig2622 AT5G23300 dihydroorotate dehydrogenase, mitochondrial / dihydroorotate oxidase / DHOdehase (PYRD), nearly identical to SP|P32746 Dihydroorotate dehydrogenase, mitochondrial precursor (EC 1.3.3.1) (Dihydroorotate oxidase) (DHOdehase) {Arabidopsis thaliana} [ 18420660 NP_568428.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7847795 CHROM_POS_END:7850246 } -=| MIDDLE_POINT:7849020 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.9 71 164 228 1 897 460 XLS3_Contig2623 AT1G79750 malate oxidoreductase, putative, similar to malate oxidoreductase (NADP-dependent malic enzyme) GB:P34105 (Populus balsamifera subsp. trichocarpa) [ 15219980 NP_178093.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:30012548 CHROM_POS_END:30016072 } -=| MIDDLE_POINT:30014310 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.93 77 168 216 1 1478 646 XLS3_Contig2624 AT1G79750 malate oxidoreductase, putative, similar to malate oxidoreductase (NADP-dependent malic enzyme) GB:P34105 (Populus balsamifera subsp. trichocarpa) [ 15219980 NP_178093.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:30012548 CHROM_POS_END:30016072 } -=| MIDDLE_POINT:30014310 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 476 652 1 2307 646 XLS3_Contig2625 AT2G15790 peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase, identical to cyclophilin-40 (Arabidopsis thaliana) GI:13442983 [ 18397936 NP_565381.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6885226 CHROM_POS_END:6887825 } -=| MIDDLE_POINT:6886525 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 173 243 1 952 361 XLS3_Contig2626 no_hits_found 0 0 XLS3_Contig2627 AT3G48320 cytochrome P450 71A21, putative (CYP71A21), identical to Cytochrome P450 71A21 (SP:Q9STL2) (Arabidopsis thaliana) [ 22331682 NP_680111.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17902226 CHROM_POS_END:17903789 } -=| MIDDLE_POINT:17903007 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.67 47 131 275 1 901 490 XLS3_Contig2628 AT4G08390 L-ascorbate peroxidase, stromal (sAPX), identical to stromal ascorbate peroxidase (Arabidopsis thaliana) gi|1419388|emb|CAA67425 [ 15236483 NP_192579.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:5314996 CHROM_POS_END:5317068 } -=| MIDDLE_POINT:5316032 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 191 291 1 946 372 XLS3_Contig2629 AT3G18210 oxidoreductase, 2OG-Fe(II) oxygenase family protein, contains Pfam domain PF03171 2OG-Fe(II) oxygenase superfamily [ 18401806 NP_566600.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6238270 CHROM_POS_END:6240402 } -=| MIDDLE_POINT:6239336 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 61 190 309 1 1025 394 XLS3_Contig2630 no_hits_found 0 0 XLS3_Contig2631 AT1G12230 transaldolase, putative, similar to Swiss-Prot:P30148 transaldolase B (EC 2.2.1.2) (Escherichia coli O157:H7) [ 18391366 NP_563900.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4148048 CHROM_POS_END:4150706 } -=| MIDDLE_POINT:4149377 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 184 266 1 953 405 XLS3_Contig2632 AT4G03100 rac GTPase activating protein, putative, similar to rac GTPase activating protein 3 (Lotus japonicus) GI:3695063 [ 42566263 NP_192219.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1374361 CHROM_POS_END:1375913 } -=| MIDDLE_POINT:1375137 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 235 303 1 933 430 XLS3_Contig2633 AT3G51930 transducin family protein / WD-40 repeat family protein, contains 7 WD-40 repeats (PF00400) [ 15231088 NP_190761.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19282650 CHROM_POS_END:19283897 } -=| MIDDLE_POINT:19283273 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 197 288 1 966 415 XLS3_Contig2634 AT4G02740 similar to F-box family protein [Arabidopsis thaliana] (TAIR:At4g02760.1) [ 79461446 NP_192183.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1217756 CHROM_POS_END:1220834 } -=| MIDDLE_POINT:1219295 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.37 38 96 248 1 943 479 XLS3_Contig2635 AT3G63510 nitrogen regulation family protein, contains Pfam domain PF01207: Dihydrouridine synthase (Dus) [ 18412825 NP_567149.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:23461562 CHROM_POS_END:23463657 } -=| MIDDLE_POINT:23462609 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 200 251 1 994 404 XLS3_Contig2636 AT4G37850 basic helix-loop-helix (bHLH) family protein, contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain [ 30691602 NP_195498.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17796356 CHROM_POS_END:17797641 } -=| MIDDLE_POINT:17796998 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.35 54 85 155 1 935 328 XLS3_Contig2637 AT2G44500 expressed protein, contains Pfam PF03138: Plant protein family. The function of this family of plant proteins is unknown [ 15224887 NP_181978.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:18381523 CHROM_POS_END:18383511 } -=| MIDDLE_POINT:18382517 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.76 54 153 281 1 915 573 XLS3_Contig2638 AT5G60850 Dof-type zinc finger domain-containing protein, similar to zinc finger protein OBP4 gi:5059396 from (Arabidopsis thaliana) [ 15239449 NP_200893.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:24497804 CHROM_POS_END:24498727 } -=| MIDDLE_POINT:24498265 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.49 48 117 242 1 965 307 XLS3_Contig2639 AT5G53050 hydrolase, alpha/beta fold family protein, contains Pfam profile PF00561: hydrolase, alpha/beta fold family [ 42573668 NP_974930.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21527760 CHROM_POS_END:21530658 } -=| MIDDLE_POINT:21529209 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 218 324 1 1054 396 XLS3_Contig2640 AT2G40070 expressed protein [ AT2G40070 42569785 NP_181536.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16735456 CHROM_POS_END:16738238 } -=| MIDDLE_POINT:16736847 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.29 31 109 348 1 949 607 XLS3_Contig2641 AT3G10410 serine carboxypeptidase III, putative, similar to serine carboxypeptidase III from Oryza sativa SP|P37891, Matricaria chamomilla GI:6960455, Hordeum vulgare SP|P21529, Triticum aestivum SP|P11515 [ 15228281 NP_187652.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3235523 CHROM_POS_END:3238068 } -=| MIDDLE_POINT:3236795 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 189 283 1 958 516 XLS3_Contig2642 AT5G64560 magnesium transporter CorA-like family protein (MRS2-2), weak similarity to SP|Q01926 RNA splicing protein MRS2, mitochondrial precursor {Saccharomyces cerevisiae} [ 30698045 NP_851269.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:25824251 CHROM_POS_END:25826621 } -=| MIDDLE_POINT:25825436 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.92 70 180 257 1 868 394 XLS3_Contig2643 AT5G38600 proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein, contains Pfam domains PF00098: Zinc knuckle, PF04046: PSP [ 18421775 NP_568558.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15474616 CHROM_POS_END:15477696 } -=| MIDDLE_POINT:15476156 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.54 44 121 271 1 935 532 XLS3_Contig2644 AT5G35830 ankyrin repeat family protein, contains ankyrin repeats, Pfam:PF00023 [ 15239209 NP_198432.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14017543 CHROM_POS_END:14018646 } -=| MIDDLE_POINT:14018094 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.22 40 59 144 1 1192 282 XLS3_Contig2645 AT1G68080 similar to leprecan [Ciona intestinalis] (GB:BAB00631.1) [ 79375455 NP_176975.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:25521193 CHROM_POS_END:25522903 } -=| MIDDLE_POINT:25522048 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 197 295 1 897 389 XLS3_Contig2646 AT1G06730 pfkB-type carbohydrate kinase family protein, contains Pfam profile: PF00294 pfkB family carbohydrate kinase [ 15222179 NP_172158.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2067632 CHROM_POS_END:2070048 } -=| MIDDLE_POINT:2068840 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.93 54 176 324 1 1102 488 XLS3_Contig2647 AT4G31790 diphthine synthase, putative (DPH5), similar to Diphthine synthase (Diphtamide biosynthesis methyltransferase) (DPH5) (SP:P32469) (Saccharomyces cerevisiae) [ 15236075 NP_194907.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:15377485 CHROM_POS_END:15378536 } -=| MIDDLE_POINT:15378010 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 186 238 1 1510 277 XLS3_Contig2648 AT5G24810 ABC1 family protein, contains Pfam domain, PF03109: ABC1 family [ 18420844 NP_568458.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8516905 CHROM_POS_END:8522619 } -=| MIDDLE_POINT:8519762 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.9 61 153 249 1 994 1009 XLS3_Contig2649 AT2G46710 rac GTPase activating protein, putative, similar to rac GTPase activating protein 2 (Lotus japonicus) GI:3695061 [ 30690481 NP_850458.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19199175 CHROM_POS_END:19201726 } -=| MIDDLE_POINT:19200450 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.82 50 94 188 1 970 455 XLS3_Contig2650 AT1G32910 transferase family protein, low similarity to anthranilate N-hydroxycinnamoyl/benzoyltransferase Dianthus caryophyllus GI:2239091, benzylalcohol acetyltransferase Clarkia breweri GI:6166336 [ 15223333 NP_174567.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11925406 CHROM_POS_END:11926888 } -=| MIDDLE_POINT:11926147 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.47 49 93 187 1 900 464 XLS3_Contig2651 AT2G40000 expressed protein [ AT2G40000 15225612 NP_181529.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16707727 CHROM_POS_END:16709034 } -=| MIDDLE_POINT:16708380 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.63 47 134 280 1 907 435 XLS3_Contig2652 AT4G04770 ATP-binding-cassette transporter (ABC1), Identical to the protein described in PMID:11156608 and note that sequence was not deposited into GenBank by the authors [ 15234447 NP_192386.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2427996 CHROM_POS_END:2429783 } -=| MIDDLE_POINT:2428889 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 190 287 1 946 557 XLS3_Contig2653 AT5G61410 ribulose-phosphate 3-epimerase, chloroplast, putative / pentose-5-phosphate 3-epimerase, putative, strong similarity to SP|Q43157 Ribulose-phosphate 3-epimerase, chloroplast precursor (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (RPE) (R5P3E) {Spinacia oleracea} [ 30697525 NP_851240.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:24701311 CHROM_POS_END:24703062 } -=| MIDDLE_POINT:24702186 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 235 280 1 1231 281 XLS3_Contig2654 AT3G10290 phosphate translocator-related, low similarity to SP|P52178 Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor (CTPT) {Brassica oleracea}, phosphoenolpyruvate/phosphate translocator precursor (Mesembryanthemum crystallinum) GI:9295275 [ 15228248 NP_187640.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3183516 CHROM_POS_END:3185329 } -=| MIDDLE_POINT:3184422 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 212 255 1 952 355 XLS3_Contig2655 AT2G40290 eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative, similar to Swiss-Prot:P05198 eukaryotic translation initiation factor 2 subunit 1 (Eukaryotic translation initiation factor 2 alpha subunit) (eIF-2-alpha) (EIF- 2alpha) (EIF-2A) (Homo sapiens) [ 18405334 NP_565927.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:16836108 CHROM_POS_END:16837967 } -=| MIDDLE_POINT:16837037 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 216 269 1 1008 344 XLS3_Contig2656 AT5G17540 transferase family protein, similar to hypersensitivity-related gene product HSR201 - Nicotiana tabacum, EMBL:X95343 [ 15237985 NP_197256.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5782063 CHROM_POS_END:5783684 } -=| MIDDLE_POINT:5782873 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.88 61 156 255 1 904 461 XLS3_Contig2657 AT3G57290 eukaryotic translation initiation factor 3E / eIF3e (TIF3E1), identical to eukaryotic initiation factor 3E subunit (Arabidopsis thaliana) gi|12407658|gb|AAG53613 [ 18410687 NP_567047.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21207765 CHROM_POS_END:21210052 } -=| MIDDLE_POINT:21208908 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 87 225 257 1 902 441 XLS3_Contig2658 AT5G45950 GDSL-motif lipase/hydrolase family protein, similar to family II lipase EXL3 (GI:15054386) and EXL1 (GI:15054382) (Arabidopsis thaliana), anther-specific proline-rich protein APG (Arabidopsis thaliana) GI:22599 [ 15237350 NP_199407.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18651382 CHROM_POS_END:18653739 } -=| MIDDLE_POINT:18652560 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.8 52 147 279 1 924 357 XLS3_Contig2659 AT5G67270 microtubule-associated EB1 family protein, similar to SP|Q9UPY8 Microtubule-associated protein RP/EB family member 3 (Protein EB3) {Homo sapiens} [ 15240262 NP_201528.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26857474 CHROM_POS_END:26859210 } -=| MIDDLE_POINT:26858342 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.94 64 178 277 1 904 329 XLS3_Contig2660 AT1G53210 sodium/calcium exchanger family protein / calcium-binding EF hand family protein, contains Pfam profiles: PF01699 sodium/calcium exchanger protein, PF00036 EF hand [ 30695448 NP_564623.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19848458 CHROM_POS_END:19851201 } -=| MIDDLE_POINT:19849829 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.54 40 120 295 1 903 585 XLS3_Contig2661 AT5G49650 xylulose kinase, putative, similar to D-xylulokinase (Pichia stipitis) gi|8100400|gb|AAF72328 [ 15240526 NP_199776.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:20170124 CHROM_POS_END:20172800 } -=| MIDDLE_POINT:20171462 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 220 298 1 939 558 XLS3_Contig2662 AT3G56850 ABA-responsive element-binding protein 3 (AREB3), identical to ABA-responsive element binding protein 3 (AREB3) (Arabidopsis thaliana) GI:9967421 [ 15230146 NP_191244.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21057533 CHROM_POS_END:21058873 } -=| MIDDLE_POINT:21058203 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.37 44 106 238 1 979 297 XLS3_Contig2663 AT4G12560 F-box family protein, contains F-box domain Pfam:PF00646 [ 30682162 NP_192993.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7441812 CHROM_POS_END:7443154 } -=| MIDDLE_POINT:7442483 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.29 31 90 284 1 907 413 XLS3_Contig2664 AT3G02570 phosphomannose isomerase type I family protein, contains Pfam profile: PF01238 phosphomannose isomerase type I [ 15232927 NP_186906.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:543470 CHROM_POS_END:545485 } -=| MIDDLE_POINT:544477 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.75 55 139 251 1 921 432 XLS3_Contig2665 AT3G27540 glycosyl transferase family 17 protein, low similarity to beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144) from Mus musculus (SP|Q10470), Rattus norvegicus (SP|Q02527), Homo sapiens (SP|Q09327) [ 15232194 NP_189391.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10206726 CHROM_POS_END:10208125 } -=| MIDDLE_POINT:10207425 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 265 389 1 1687 390 XLS3_Contig2666 AT3G14310 pectinesterase family protein, contains Pfam profiles: PF01095 pectinesterase, PF04043 plant invertase/pectin methylesterase inhibitor [ 15231828 NP_188048.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4772221 CHROM_POS_END:4775102 } -=| MIDDLE_POINT:4773661 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 54 232 428 1 1275 592 XLS3_Contig2667 AT3G18240 expressed protein [ AT3G18240 18401816 NP_566603.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:6255816 CHROM_POS_END:6257701 } -=| MIDDLE_POINT:6256758 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.79 50 139 278 1 952 419 XLS3_Contig2668 AT5G23660 nodulin MtN3 family protein, similar to MtN3 GI:1619602 (root nodule development) from (Medicago truncatula) [ 15237803 NP_197755.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7971939 CHROM_POS_END:7973799 } -=| MIDDLE_POINT:7972869 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.74 54 142 259 1 958 285 XLS3_Contig2669 AT2G36290 hydrolase, alpha/beta fold family protein, low similarity to 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (Rhodococcus sp. RHA1) GI:8978311 [ 18404095 NP_565841.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15215946 CHROM_POS_END:15217847 } -=| MIDDLE_POINT:15216896 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 59 203 342 1 1179 364 XLS3_Contig2670 AT2G05260 lipase class 3 family protein, contains Pfam profile PF01764: Lipase [ 18396010 NP_565323.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1918727 CHROM_POS_END:1919890 } -=| MIDDLE_POINT:1919308 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.7 52 124 235 1 928 358 XLS3_Contig2671 AT5G32440 expressed protein [ AT5G32440 18421340 NP_568521.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12094244 CHROM_POS_END:12095626 } -=| MIDDLE_POINT:12094935 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.35 44 89 200 1 927 264 XLS3_Contig2672 AT4G38240 alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative, similar to N-acetylglucosaminyltransferase I from Arabidopsis thaliana (gi:5139335) [ 30691786 NP_195537.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17932000 CHROM_POS_END:17935203 } -=| MIDDLE_POINT:17933601 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.42 52 81 153 1 890 444 XLS3_Contig2673 AT1G07640 similar to Dof-type zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:At2g28810.1) [ 79317183 NP_001030988.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2354704 CHROM_POS_END:2356009 } -=| MIDDLE_POINT:2355356 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.32 34 94 270 1 1118 339 XLS3_Contig2674 AT5G66320 zinc finger (GATA type) family protein [ AT5G66320 15239343 NP_201433.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:26513434 CHROM_POS_END:26514535 } -=| MIDDLE_POINT:26513984 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.38 48 97 198 1 1022 339 XLS3_Contig2675 AT3G15090 oxidoreductase, zinc-binding dehydrogenase family protein, low similarity to NOGO-interacting mitochondrial protein from Mus musculus (gi:14522884) [ 15232485 NP_188127.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5076854 CHROM_POS_END:5078877 } -=| MIDDLE_POINT:5077865 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.85 69 156 226 1 874 366 XLS3_Contig2676 AT1G14670 endomembrane protein 70, putative, similar to endomembrane protein emp70 precursor isolog GB:AAF67014 GI:7677068 (Homo sapiens) [ 15223852 NP_172919.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5037664 CHROM_POS_END:5040194 } -=| MIDDLE_POINT:5038929 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 221 291 1 965 592 XLS3_Contig2677 AT1G33060 no apical meristem (NAM) family protein, similar to NAC1 GB:AAF68626 GI:7716952 from (Medicago truncatula) [ 42571727 NP_973954.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:11975498 CHROM_POS_END:11978473 } -=| MIDDLE_POINT:11976985 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.7 60 124 204 1 1003 652 XLS3_Contig2678 AT3G25800 serine/threonine protein phosphatase 2A (PP2A) 65 KDa regulatory subunit A, identical to protein phosphatase 2A 65 kDa regulatory subunit (pDF1) GI:683502 from (Arabidopsis thaliana) [ 15230896 NP_189208.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9424059 CHROM_POS_END:9427020 } -=| MIDDLE_POINT:9425539 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 91 248 271 1 960 587 XLS3_Contig2679 AT3G46450 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein, contains Pfam PF00650 : CRAL/TRIO domain [ 42572589 NP_974390.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17104282 CHROM_POS_END:17106304 } -=| MIDDLE_POINT:17105293 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.61 45 123 273 1 1098 494 XLS3_Contig2680 AT4G02425 expressed protein [ AT4G02425 30679132 NP_849288.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1067531 CHROM_POS_END:1068663 } -=| MIDDLE_POINT:1068097 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.61 55 139 249 1 955 262 XLS3_Contig2681 AT3G01190 peroxidase 27 (PER27) (P27) (PRXR7), identical to SP|Q43735 Peroxidase 27 precursor (EC 1.11.1.7) (Atperox P27) (PRXR7) (ATP12a) {Arabidopsis thaliana} [ 15232058 NP_186768.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:67243 CHROM_POS_END:68484 } -=| MIDDLE_POINT:67863 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.9 61 163 263 1 848 321 XLS3_Contig2682 AT1G56050 GTP-binding protein-related, similar to GTP-binding protein GI:10176676 from (Bacillus halodurans) [ 42562778 NP_176001.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20967458 CHROM_POS_END:20969846 } -=| MIDDLE_POINT:20968652 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 233 307 1 917 421 XLS3_Contig2683 AT3G03610 phagocytosis and cell motility protein ELMO1-related, contains weak similarity to ELMO1 (Mus musculus) gi|16118551|gb|AAL14464 [ 18396599 NP_566211.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:869486 CHROM_POS_END:871694 } -=| MIDDLE_POINT:870590 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.19 39 43 110 1 1286 323 XLS3_Contig2684 AT5G50960 nucleotide-binding family protein, similar to Nucleotide-binding protein 1 (NBP 1) (SP:Q9R060) (Mus musculus) [ 18423220 NP_568748.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20751493 CHROM_POS_END:20753050 } -=| MIDDLE_POINT:20752271 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 237 291 1 910 350 XLS3_Contig2685 AT1G69430 expressed protein [ AT1G69430 15222319 NP_177102.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:26101688 CHROM_POS_END:26102740 } -=| MIDDLE_POINT:26102214 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.58 65 111 169 1 916 350 XLS3_Contig2686 AT3G06483 similar to mitochondrial pyruvate dehydrogenase kinase isoform 1 [Glycine max] (GB:AAT02655.1) [ 79395776 NP_187300.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1990733 CHROM_POS_END:1992587 } -=| MIDDLE_POINT:1991660 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 207 278 1 974 366 XLS3_Contig2687 AT3G47520 malate dehydrogenase (NAD), chloroplast (MDH), identical to chloroplast NAD-malate dehydrogenase (Arabidopsis thaliana) GI:3256066 [ 15232820 NP_190336.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17524642 CHROM_POS_END:17525853 } -=| MIDDLE_POINT:17525247 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.98 72 191 264 1 925 403 XLS3_Contig2688 AT4G14780 protein kinase, putative, similar to protein kinase ATMRK1 (Arabidopsis thaliana) gi|2351097|dbj|BAA22079 [ 15233574 NP_193214.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8492984 CHROM_POS_END:8494475 } -=| MIDDLE_POINT:8493729 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.27 68 60 88 1 973 364 XLS3_Contig2689 AT2G35680 dual specificity protein phosphatase family protein, contains Pfam profile: PF00782 dual specificity phosphatase, catalytic domain [ 18403920 NP_565816.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15004083 CHROM_POS_END:15005669 } -=| MIDDLE_POINT:15004876 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.87 54 174 321 1 1486 337 XLS3_Contig2690 AT2G42800 leucine-rich repeat family protein, contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611 [ 15228004 NP_181808.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17815234 CHROM_POS_END:17816622 } -=| MIDDLE_POINT:17815928 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.9 58 176 300 1 917 462 XLS3_Contig2691 AT5G57960 GTP-binding family protein, similar to SP|P25519 GTP-binding protein hflX {Escherichia coli} [ 15242912 NP_200604.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:23480359 CHROM_POS_END:23483707 } -=| MIDDLE_POINT:23482033 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 278 379 1 1504 540 XLS3_Contig2692 AT1G08630 L-allo-threonine aldolase-related, similar to L-allo-threonine aldolase (EC 4.1.2.-) (L-allo-TA) (L-allo-threonine acetaldehyde-lyase) (SP:O07051) {Aeromonas jandaei} [ 18390920 NP_563822.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2743951 CHROM_POS_END:2745688 } -=| MIDDLE_POINT:2744819 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 200 262 1 1067 358 XLS3_Contig2693 AT5G16780 SART-1 family protein, contains Pfam domain, PF03343: SART-1 family [ 15237413 NP_197180.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5517787 CHROM_POS_END:5521569 } -=| MIDDLE_POINT:5519678 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 62 249 397 1 1138 820 XLS3_Contig2694 AT3G10770 expressed protein [ AT3G10770 18398995 NP_566381.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:3372466 CHROM_POS_END:3374031 } -=| MIDDLE_POINT:3373248 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.65 60 138 230 1 1004 333 XLS3_Contig2695 AT1G54570 esterase/lipase/thioesterase family protein, contains Interpro entry IPR000379 [ 18404989 NP_564662.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20384316 CHROM_POS_END:20388620 } -=| MIDDLE_POINT:20386468 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.71 52 140 265 1 1020 704 XLS3_Contig2696 AT1G72680 cinnamyl-alcohol dehydrogenase, putative, similar to cinnamyl-alcohol dehydrogenase GB:AAC35846 (Medicago sativa), SP|Q08350 (Picea abies) [ 15218564 NP_177412.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:27363008 CHROM_POS_END:27364538 } -=| MIDDLE_POINT:27363773 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 177 229 1 884 355 XLS3_Contig2697 AT3G53270 expressed protein, endopeptidase Clp ATP-binding chain C, Chlamydia pneumoniae, PIR:G72079 [ 18409805 NP_566983.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:19761384 CHROM_POS_END:19763146 } -=| MIDDLE_POINT:19762265 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.44 56 78 139 1 932 280 XLS3_Contig2698 AT4G17486 expressed protein [ AT4G17486 30684058 NP_567528.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9750004 CHROM_POS_END:9751213 } -=| MIDDLE_POINT:9750608 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.54 52 90 170 1 934 224 XLS3_Contig2699 AT1G74920 betaine-aldehyde dehydrogenase, putative, identical to betaine-aldehyde dehydrogenase, chloroplast precursor (BADH) (Arabidopsis thaliana) SWISS-PROT:Q9S795 [ 18410730 NP_565094.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:28142836 CHROM_POS_END:28146234 } -=| MIDDLE_POINT:28144535 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 218 281 1 1081 501 XLS3_Contig2700 AT1G07710 ankyrin repeat family protein, contains ankyrin repeat domains, Pfam:PF00023 [ 15222993 NP_172250.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2386272 CHROM_POS_END:2387983 } -=| MIDDLE_POINT:2387127 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.76 63 148 233 1 1055 543 XLS3_Contig2701 no_hits_found 0 0 XLS3_Contig2702 AT4G39870 expressed protein, hypothetical protein, Schizosaccharomyces cerevisae, Z99168 [ 30692556 NP_195697.3 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18502228 CHROM_POS_END:18504269 } -=| MIDDLE_POINT:18503248 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.31 38 89 234 1 959 394 XLS3_Contig2703 no_hits_found 0 0 XLS3_Contig2704 AT5G53120 spermidine synthase, putative / putrescine aminopropyltransferase, putative, similar to SP|O82147 Spermidine synthase (EC 2.5.1.16) (Putrescine aminopropyltransferase) (SPDSY) {Coffea arabica} [ 30696281 NP_851178.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21552655 CHROM_POS_END:21554879 } -=| MIDDLE_POINT:21553767 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 205 264 1 974 359 XLS3_Contig2705 AT1G57720 elongation factor 1B-gamma, putative / eEF-1B gamma, putative, similar to elongation factor 1B gamma GI:3868758 from (Oryza sativa) [ 15223649 NP_176084.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21381538 CHROM_POS_END:21383779 } -=| MIDDLE_POINT:21382658 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.94 72 171 235 1 805 413 XLS3_Contig2706 AT1G45000 26S proteasome regulatory complex subunit p42D, putative, similar to 26S proteasome regulatory complex subunit p42D (Drosophila melanogaster) gi|6434958|gb|AAF08391 [ 15219503 NP_175120.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17011660 CHROM_POS_END:17014047 } -=| MIDDLE_POINT:17012853 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 90 246 271 1 927 399 XLS3_Contig2707 AT4G15900 PP1/PP2A phosphatases pleiotropic regulator 1 (PRL1), identical to PP1/PP2A phosphatases pleiotropic regulator PRL1 (SP:Q42384) (Arabidopsis thaliana), PRL1 (Arabidopsis thaliana) GI:577733 [ 15234752 NP_193325.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9023790 CHROM_POS_END:9027458 } -=| MIDDLE_POINT:9025624 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 214 302 1 1018 486 XLS3_Contig2708 AT5G67320 WD-40 repeat family protein, strong similarity to unknown protein (ref|NP_005638.1) [ 15240710 NP_201533.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:26874494 CHROM_POS_END:26878200 } -=| MIDDLE_POINT:26876347 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.66 50 136 270 1 870 613 XLS3_Contig2709 AT4G12560 F-box family protein, contains F-box domain Pfam:PF00646 [ AT4G12560 30682162 NP_192993.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7441812 CHROM_POS_END:7443154 } -=| MIDDLE_POINT:7442483 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.23 28 101 355 1 1092 413 XLS3_Contig2710 AT3G51990 protein kinase family protein, contains protein kinase domain, PF00069 [ 15231097 NP_190767.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19298967 CHROM_POS_END:19300055 } -=| MIDDLE_POINT:19299511 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.74 55 150 272 1 906 362 XLS3_Contig2711 AT5G24800 bZIP transcription factor family protein, contains Pfam profile: PF00170 bZIP transcription factor [ 18420842 NP_568457.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8515262 CHROM_POS_END:8516544 } -=| MIDDLE_POINT:8515903 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.54 51 124 241 1 1369 277 XLS3_Contig2712 AT5G27930 protein phosphatase 2C, putative / PP2C, putative, protein phosphatase-2C, Mesembryanthemum crystallinum, EMBL:AF075581 [ 30690850 NP_851086.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9958203 CHROM_POS_END:9960223 } -=| MIDDLE_POINT:9959213 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.89 61 155 252 1 1033 373 XLS3_Contig2713 AT2G45510 cytochrome P450, putative [ AT2G45510 15225499 NP_182075.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18760159 CHROM_POS_END:18762018 } -=| MIDDLE_POINT:18761088 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.71 46 136 291 1 917 511 XLS3_Contig2714 AT5G22100 RNA cyclase family protein, contains Pfam profiles: PF01137 RNA 3'-terminal phosphate cyclase, PF05189 RNA 3-prime-terminal phosphate cyclase (RTC) [ 22326964 NP_680196.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7329018 CHROM_POS_END:7330721 } -=| MIDDLE_POINT:7329869 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.72 73 134 182 1 944 375 XLS3_Contig2715 AT4G19710 bifunctional aspartate kinase/homoserine dehydrogenase, putative / AK-HSDH, putative, similar to gb|X71364 (PIR|S46497) aspartate kinase / homoserine dehydrogenase from Arabidopsis thaliana [ 42572959 NP_974576.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:10725239 CHROM_POS_END:10729546 } -=| MIDDLE_POINT:10727392 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 207 291 1 939 916 XLS3_Contig2716 AT1G04420 aldo/keto reductase family protein, Similar to SP|Q46933 Tas protein {Escherichia coli}, Babesia aldo-keto reductase SP|P40690 [ 15219722 NP_171937.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1191633 CHROM_POS_END:1193698 } -=| MIDDLE_POINT:1192665 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 275 409 1 1349 412 XLS3_Contig2717 no_hits_found 0 0 XLS3_Contig2718 AT3G51970 long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein, wax synthase - Simmondsia chinensis, PID:g5020219 similar to wax synthase (gi:5020219) from Simmondsia chinensis [ 15231093 NP_190765.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19295398 CHROM_POS_END:19296435 } -=| MIDDLE_POINT:19295916 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.44 38 92 236 1 899 345 XLS3_Contig2719 AT1G57720 elongation factor 1B-gamma, putative / eEF-1B gamma, putative, similar to elongation factor 1B gamma GI:3868758 from (Oryza sativa) [ 15223649 NP_176084.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21381538 CHROM_POS_END:21383779 } -=| MIDDLE_POINT:21382658 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.84 67 148 219 1 858 413 XLS3_Contig2720 AT4G30960 CBL-interacting protein kinase 6 (CIPK6), identical to CBL-interacting protein kinase 6 (Arabidopsis thaliana) gi|9280634|gb|AAF86505 [ 15235768 NP_194825.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15067406 CHROM_POS_END:15068731 } -=| MIDDLE_POINT:15068068 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.99 84 173 204 1 912 441 XLS3_Contig2721 AT3G55620 eukaryotic translation initiation factor 6, putative / eIF-6, putative, similar to SP|O55135 Eukaryotic translation initiation factor 6 (eIF-6) (B4 integrin interactor) {Mus musculus} [ 15228161 NP_191121.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20645560 CHROM_POS_END:20647291 } -=| MIDDLE_POINT:20646425 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 204 245 1 962 245 XLS3_Contig2722 AT5G48930 transferase family protein, similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (GI:3288180, GI:2239091) [ 15239747 NP_199704.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19853880 CHROM_POS_END:19855318 } -=| MIDDLE_POINT:19854599 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.91 57 163 282 1 952 433 XLS3_Contig2723 AT5G02800 protein kinase family protein, contains protein kinase domain, Pfam:PF00069 [ 30679773 NP_195900.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:635543 CHROM_POS_END:637372 } -=| MIDDLE_POINT:636457 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 217 291 1 931 378 XLS3_Contig2724 AT4G33270 WD-40 repeat family protein, contains 6 WD-40 repeats (PF00400) [ 15234128 NP_195053.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16044549 CHROM_POS_END:16046594 } -=| MIDDLE_POINT:16045571 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.92 71 166 231 1 898 457 XLS3_Contig2725 AT3G22800 leucine-rich repeat family protein / extensin family protein, similar to extensin-like protein (Lycsimilar to extensin-like protein (Lycopersicon esculentum) gi|5917664|gb|AAD55979 [ 15228861 NP_188919.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8063070 CHROM_POS_END:8064482 } -=| MIDDLE_POINT:8063776 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 187 269 1 998 470 XLS3_Contig2726 AT3G13460 expressed protein, contains Pfam profile PF04146: YT521-B-like family [ 30682679 NP_187955.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4385281 CHROM_POS_END:4388227 } -=| MIDDLE_POINT:4386754 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.5 47 117 247 1 874 667 XLS3_Contig2727 AT5G11670 malate oxidoreductase, putative, similar to NADP-dependent malic enzyme (EC 1.1.1.40) (NADP-ME) (SP|P12628) {Phaseolus vulgaris} [ 15239146 NP_196728.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3754457 CHROM_POS_END:3758041 } -=| MIDDLE_POINT:3756249 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 412 513 1 1602 588 XLS3_Contig2728 AT4G05160 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative, similar to 4CL2 (gi:12229665) from Arabidopsis thaliana, 4CL1 (gi:12229631) from Nicotiana tabacum [ 15234634 NP_192425.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2664449 CHROM_POS_END:2666545 } -=| MIDDLE_POINT:2665497 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.68 49 139 279 1 848 544 XLS3_Contig2729 AT1G09430 ATP-citrate synthase (ATP-citrate (pro-S-)-lyase/citrate cleavage enzyme), putative, similar to ATP-citrate-lyase (GI:16648642) (Arabidopsis thaliana) [ 15217510 NP_172414.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3042137 CHROM_POS_END:3044980 } -=| MIDDLE_POINT:3043558 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 87 250 286 1 1050 424 XLS3_Contig2730 AT5G20270 expressed protein, contains Pfam domain, PF03006: Uncharacterised protein family (Hly-III / UPF0073) [ 15241302 NP_197527.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6841027 CHROM_POS_END:6842658 } -=| MIDDLE_POINT:6841842 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.61 50 115 230 1 941 332 XLS3_Contig2731 AT2G33500 zinc finger (B-box type) family protein [ AT2G33500 30685731 NP_850211.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:14195235 CHROM_POS_END:14197122 } -=| MIDDLE_POINT:14196178 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.46 63 70 111 1 903 402 XLS3_Contig2732 no_hits_found 0 0 XLS3_Contig2733 AT2G33620 DNA-binding family protein / AT-hook protein 1 (AHP1), identical to AT-hook protein 1 (Arabidopsis thaliana) gi|2598227|emb|CAA10857 [ 18403332 NP_565769.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:14241825 CHROM_POS_END:14243639 } -=| MIDDLE_POINT:14242732 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.32 39 96 245 1 1057 351 XLS3_Contig2734 AT3G59660 C2 domain-containing protein / GRAM domain-containing protein, low similarity to GLUT4 vesicle protein (Rattus norvegicus) GI:4193489 [ 22331873 NP_191525.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:22045403 CHROM_POS_END:22049461 } -=| MIDDLE_POINT:22047432 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.76 64 109 168 1 869 594 XLS3_Contig2735 AT5G48930 transferase family protein, similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (GI:3288180, GI:2239091) [ 15239747 NP_199704.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19853880 CHROM_POS_END:19855318 } -=| MIDDLE_POINT:19854599 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 206 269 1 1088 433 XLS3_Contig2736 AT5G19600 sulfate transporter, putative, similar to sulfate transporter (Arabidopsis thaliana) GI:2285885 [ 18419967 NP_568377.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6613115 CHROM_POS_END:6616893 } -=| MIDDLE_POINT:6615004 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 248 350 1 1060 634 XLS3_Contig2737 AT5G10030 bZIP family transcription factor (OBF4), identical to ocs-element binding factor 4 GI:414613 from (Arabidopsis thaliana) [ 15238046 NP_196565.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3137649 CHROM_POS_END:3139296 } -=| MIDDLE_POINT:3138472 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.98 54 194 353 1 1664 364 XLS3_Contig2738 AT5G65670 auxin-responsive protein / indoleacetic acid-induced protein 9 (IAA9), identical to SP|Q38827 Auxin-responsive protein IAA9 (Indoleacetic acid-induced protein 9) {Arabidopsis thaliana} [ 30698143 NP_851275.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:26271689 CHROM_POS_END:26273360 } -=| MIDDLE_POINT:26272524 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.61 53 132 248 1 999 338 XLS3_Contig2739 AT1G33540 serine carboxypeptidase S10 family protein, similar to GI:8777303 from (Arabidopsis thaliana) (DNA Res. 7 (1), 31-63 (2000)) [ 15217581 NP_174619.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12162329 CHROM_POS_END:12164680 } -=| MIDDLE_POINT:12163504 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.68 47 124 263 1 895 446 XLS3_Contig2740 AT3G45900 expressed protein [ AT3G45900 42565618 NP_190176.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16885551 CHROM_POS_END:16886969 } -=| MIDDLE_POINT:16886260 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.3 33 94 277 1 924 389 XLS3_Contig2741 AT5G18130 expressed protein, similar to unknown protein (gb|AAF00631.1) [ 15238744 NP_197314.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:5995636 CHROM_POS_END:5997167 } -=| MIDDLE_POINT:5996401 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.24 32 98 297 1 1100 280 XLS3_Contig2742 AT4G35910 expressed protein [ AT4G35910 18419746 NP_567993.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17008820 CHROM_POS_END:17011017 } -=| MIDDLE_POINT:17009918 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.97 57 181 313 1 994 458 XLS3_Contig2743 AT3G12220 serine carboxypeptidase S10 family protein, contains Pfam profile: PF00450 serine carboxypeptidase [ 30682106 NP_566414.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3896538 CHROM_POS_END:3898922 } -=| MIDDLE_POINT:3897730 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.91 43 154 357 1 1328 435 XLS3_Contig2744 AT3G07850 exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase, identical to SP|P49063 Exopolygalacturonase clone GBGA483 precursor (EC 3.2.1.67) (ExoPG) (Galacturan 1,4-alpha-galacturonidase) {Arabidopsis thaliana} [ 15231880 NP_187442.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2505819 CHROM_POS_END:2507444 } -=| MIDDLE_POINT:2506631 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.62 46 124 268 1 921 444 XLS3_Contig2745 AT1G67320 DNA primase, large subunit family, contains Pfam profile PF04104: Eukaryotic-type DNA primase, large subunit [ 42563014 NP_564893.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:25209183 CHROM_POS_END:25212629 } -=| MIDDLE_POINT:25210906 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 178 278 1 850 449 XLS3_Contig2746 AT1G21760 F-box family protein, Contains PF|00646 F-box domain. ESTs gb|Z37267, gb|R90412, gb|Z37268 and gb|T88189 come from this gene similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 [ 18395030 NP_564150.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7649313 CHROM_POS_END:7651602 } -=| MIDDLE_POINT:7650457 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 191 267 1 912 328 XLS3_Contig2747 AT3G24503 aldehyde dehydrogenase (ALDH1a), identical to aldehyde dehydrogenase ALDH1a (Arabidopsis thaliana) gi|20530143|gb|AAM27004 [ 18404212 NP_566749.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8919739 CHROM_POS_END:8923036 } -=| MIDDLE_POINT:8921387 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 206 301 1 988 501 XLS3_Contig2748 AT5G07360 amidase family protein, low similarity to enantiomerase-selective amidase (Rhodococcus sp.) GI:152052 [ 42567719 NP_196353.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2326926 CHROM_POS_END:2330012 } -=| MIDDLE_POINT:2328469 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 239 339 1 1120 659 XLS3_Contig2749 AT2G30710 RabGAP/TBC domain-containing protein, similar to SP|Q08484 GTPase-activating protein GYP1 {Saccharomyces cerevisiae} [ 18402435 NP_565706.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13093224 CHROM_POS_END:13096068 } -=| MIDDLE_POINT:13094646 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 62 180 286 1 960 440 XLS3_Contig2750 AT1G77120 alcohol dehydrogenase (ADH), identical to alcohol dehydrogenase GI:469467 from (Arabidopsis thaliana) [ 15223838 NP_177837.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:28980403 CHROM_POS_END:28982110 } -=| MIDDLE_POINT:28981256 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 231 276 1 912 379 XLS3_Contig2751 AT4G38630 26S proteasome regulatory subunit S5A (RPN10), identical to multiubiquitin chain binding protein (MBP1) SP:P55034, GI:1165206 [ 15233973 NP_195575.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18057351 CHROM_POS_END:18059453 } -=| MIDDLE_POINT:18058402 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 265 384 1 1264 386 XLS3_Contig2752 AT2G26560 patatin, putative, similar to patatin-like latex allergen (Hevea brasiliensis)(PMID:10589016) [ 15225332 NP_180224.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11300990 CHROM_POS_END:11302786 } -=| MIDDLE_POINT:11301888 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.99 61 178 290 1 975 407 XLS3_Contig2753 AT4G36850 PQ-loop repeat family protein / transmembrane family protein, similar to SP|Q10482 Seven transmembrane protein 1 {Schizosaccharomyces pombe} [ 42567473 NP_568009.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17353418 CHROM_POS_END:17355824 } -=| MIDDLE_POINT:17354621 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.61 60 117 194 1 898 374 XLS3_Contig2754 AT4G10720 ankyrin repeat family protein, contains Pfam domain, PF00023: Ankyrin repeat [ 42566408 NP_192810.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6607875 CHROM_POS_END:6609354 } -=| MIDDLE_POINT:6608614 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.28 29 90 310 1 916 445 XLS3_Contig2755 AT1G32130 similar to IWS1 C-terminus family protein [Arabidopsis thaliana] (TAIR:At4g19000.1) [ 79356327 NP_174492.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11559126 CHROM_POS_END:11561766 } -=| MIDDLE_POINT:11560446 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.51 45 124 275 1 883 502 XLS3_Contig2756 AT1G05260 peroxidase 3 (PER3) (P3) / rare cold-inducible protein (RCI3A) (PRC), identical to SP|O23044 Peroxidase 3 precursor (EC 1.11.1.7) (Atperox P3) (Rare cold inducible protein) (RCI3A) (ATPRC) {Arabidopsis thalliana} [ 15220463 NP_172018.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1529826 CHROM_POS_END:1531270 } -=| MIDDLE_POINT:1530548 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.94 69 171 246 1 1021 326 XLS3_Contig2757 no_hits_found 0 0 XLS3_Contig2758 AT3G12120 omega-6 fatty acid desaturase, endoplasmic reticulum (FAD2) / delta-12 desaturase, identical to omega-6 fatty acid desaturase, endoplasmic reticulum (FAD2) SP:P46313 (Arabidopsis thaliana (Mouse-ear cress)) (Plant Cell 6:147-158(1994)) [ 15229956 NP_187819.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3860598 CHROM_POS_END:3861749 } -=| MIDDLE_POINT:3861173 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.97 57 162 282 1 916 383 XLS3_Contig2759 AT5G50900 armadillo/beta-catenin repeat family protein, armadillo/beta-catenin-like repeats, Pfam:PF00514 [ 15241309 NP_199903.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20722277 CHROM_POS_END:20723944 } -=| MIDDLE_POINT:20723110 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 59 251 424 1 1333 555 XLS3_Contig2760 AT3G14110 tetratricopeptide repeat (TPR)-containing protein, contains Pfam profile PF00515: TPR Domain [ 18400278 NP_566478.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4676229 CHROM_POS_END:4677609 } -=| MIDDLE_POINT:4676919 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.79 74 152 203 1 1339 316 XLS3_Contig2761 AT5G18550 similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:At3g06410.1) [ 79516213 NP_197356.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6160517 CHROM_POS_END:6162731 } -=| MIDDLE_POINT:6161624 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.83 61 146 236 1 851 465 XLS3_Contig2762 AT2G26690 nitrate transporter (NTP2), identical to nitrate transporter (ntp2) (Arabidopsis thaliana) GI:4490321 [ 30683214 NP_850084.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11354425 CHROM_POS_END:11357994 } -=| MIDDLE_POINT:11356209 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 197 257 1 870 577 XLS3_Contig2763 AT5G49720 endo-1,4-beta-glucanase KORRIGAN (KOR) / cellulase (OR16pep), identical to endo-1,4-beta-D-glucanase KORRIGAN (Arabidopsis thaliana) GI:3978258 [ 15240539 NP_199783.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20214991 CHROM_POS_END:20217394 } -=| MIDDLE_POINT:20216192 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 84 173 205 1 869 621 XLS3_Contig2764 AT3G21750 UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase [ 15233149 NP_188812.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7664572 CHROM_POS_END:7665993 } -=| MIDDLE_POINT:7665282 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.55 43 121 281 1 879 473 XLS3_Contig2765 AT1G67570 expressed protein [ AT1G67570 18408800 NP_564899.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:25328981 CHROM_POS_END:25330601 } -=| MIDDLE_POINT:25329791 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.66 51 126 246 1 913 456 XLS3_Contig2766 AT4G02740 similar to F-box family protein [Arabidopsis thaliana] (TAIR:At4g02760.1) [ 79461446 NP_192183.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1217756 CHROM_POS_END:1220834 } -=| MIDDLE_POINT:1219295 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.29 42 53 125 1 892 479 XLS3_Contig2767 AT4G11280 1-aminocyclopropane-1-carboxylate synthase 6 / ACC synthase 6 (ACS6), identical to GI:3746125 [ 15237126 NP_192867.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6864164 CHROM_POS_END:6865918 } -=| MIDDLE_POINT:6865041 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 197 273 1 1117 495 XLS3_Contig2768 AT3G19980 serine/threonine protein phosphatase (STPP), identical to serine/threonine protein phosphatase (Arabidopsis thaliana) GI:14582206 [ 15231006 NP_188632.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6962014 CHROM_POS_END:6964767 } -=| MIDDLE_POINT:6963390 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 96 223 230 1 878 303 XLS3_Contig2769 AT4G16430 basic helix-loop-helix (bHLH) family protein, contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain [ 15234929 NP_193376.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9267622 CHROM_POS_END:9269025 } -=| MIDDLE_POINT:9268323 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.58 42 123 290 1 964 467 XLS3_Contig2770 AT5G54800 glucose-6-phosphate/phosphate translocator, putative, identical to glucose 6 phosphate/phosphate translocator (Arabidopsis thaliana) gi|7229675|gb|AAF42936 [ 18423670 NP_568812.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22278634 CHROM_POS_END:22280788 } -=| MIDDLE_POINT:22279711 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.98 68 196 287 1 1007 388 XLS3_Contig2771 AT4G02630 protein kinase family protein, contains protein kinase domain, Pfam:PF00069 [ 15235432 NP_192172.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1151683 CHROM_POS_END:1153161 } -=| MIDDLE_POINT:1152422 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 267 389 1 1303 492 XLS3_Contig2772 AT2G40950 bZIP transcription factor family protein, similar to AtbZIP transcription factor GI:17065880 from (Arabidopsis thaliana) [ 18405556 NP_565946.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17094901 CHROM_POS_END:17097404 } -=| MIDDLE_POINT:17096152 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.39 43 117 271 1 929 721 XLS3_Contig2773 AT1G23820 spermidine synthase 1 (SPDSYN1) / putrescine aminopropyltransferase 1, identical to SP|Q9ZUB3 Spermidine synthase 1 (EC 2.5.1.16) (Putrescine aminopropyltransferase 1) (SPDSY 1) {Arabidopsis thaliana} [ 15220885 NP_173794.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:8420399 CHROM_POS_END:8422713 } -=| MIDDLE_POINT:8421556 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 216 262 1 895 334 XLS3_Contig2774 AT3G56190 alpha-soluble NSF attachment protein 2 / alpha-SNAP2 / ASNAP2, identical to alpha-soluble NSF attachment protein 2 / alpha-SNAP2 SP:Q9SPE6 from (Arabidopsis thaliana) [ 15228848 NP_191178.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:20857098 CHROM_POS_END:20859335 } -=| MIDDLE_POINT:20858216 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.95 70 162 231 1 947 289 XLS3_Contig2775 AT3G29180 expressed protein [ AT3G29180 18406090 NP_566845.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:11150310 CHROM_POS_END:11152559 } -=| MIDDLE_POINT:11151434 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.59 38 149 392 1 1023 513 XLS3_Contig2776 AT1G48410 argonaute protein (AGO1), identical to SP|O04379 Argonaute protein (AGO1) {Arabidopsis thaliana} [ 30694320 NP_849784.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17889953 CHROM_POS_END:17895560 } -=| MIDDLE_POINT:17892756 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 261 330 1 1000 1050 XLS3_Contig2777 AT1G27210 expressed protein [ AT1G27210 18396241 NP_564273.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9455656 CHROM_POS_END:9457904 } -=| MIDDLE_POINT:9456780 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.84 56 159 281 1 1013 625 XLS3_Contig2778 AT2G05790 glycosyl hydrolase family 17 protein, similar to elicitor inducible chitinase Nt-SubE76 GI:11071974 from (Nicotiana tabacum) [ 30678225 NP_178637.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2199447 CHROM_POS_END:2201290 } -=| MIDDLE_POINT:2200368 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 215 280 1 916 472 XLS3_Contig2779 AT4G00820 calmodulin-binding protein-related, contains Pfam profile PF00612: IQ calmodulin-binding motif [ 42566208 NP_567191.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:349300 CHROM_POS_END:351307 } -=| MIDDLE_POINT:350303 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.71 55 163 292 1 971 534 XLS3_Contig2780 AT5G42520 expressed protein [ AT5G42520 18422219 NP_568605.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17018515 CHROM_POS_END:17019694 } -=| MIDDLE_POINT:17019104 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.54 58 122 210 1 1076 342 XLS3_Contig2781 AT4G16660 heat shock protein 70, putative / HSP70, putative [ AT4G16660 18414718 NP_567510.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9377247 CHROM_POS_END:9381254 } -=| MIDDLE_POINT:9379250 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 59 245 415 1 1507 867 XLS3_Contig2782 AT2G17120 peptidoglycan-binding LysM domain-containing protein, contains Pfam profile PF01476: LysM domain [ 18398317 NP_565406.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7466238 CHROM_POS_END:7467730 } -=| MIDDLE_POINT:7466984 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.75 49 140 282 1 996 350 XLS3_Contig2783 AT5G53620 expressed protein [ AT5G53620 30696362 NP_851184.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21798443 CHROM_POS_END:21802287 } -=| MIDDLE_POINT:21800365 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 48 212 440 1 1600 682 XLS3_Contig2784 AT5G19180 ubiquitin activating enzyme, putative (ECR1), identical to putative ubiquitin activating enzyme E1 (Arabidopsis thaliana) GI:2952433 [ 18419850 NP_568370.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6453377 CHROM_POS_END:6455752 } -=| MIDDLE_POINT:6454564 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 239 301 1 945 454 XLS3_Contig2785 AT3G54300 synaptobrevin family protein, similar to vesicle-associated membrane protein 7B (At VAMP7B), Arabidopsis thaliana, EMBL:AF025333 [ 15232475 NP_190998.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20119333 CHROM_POS_END:20121105 } -=| MIDDLE_POINT:20120219 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 203 238 1 1361 240 XLS3_Contig2786 AT2G41520 DNAJ heat shock N-terminal domain-containing protein, contains Pfam profiles PF00226: DnaJ domain, PF00515: TPR Domain [ 30688675 NP_850351.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17324740 CHROM_POS_END:17329783 } -=| MIDDLE_POINT:17327261 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.93 54 177 325 1 941 1108 XLS3_Contig2787 AT1G60710 aldo/keto reductase family protein, contains Pfam profile PF00248: oxidoreductase, aldo/keto reductase family [ 18406861 NP_564761.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:22358738 CHROM_POS_END:22360292 } -=| MIDDLE_POINT:22359515 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 178 232 1 979 345 XLS3_Contig2788 AT5G52790 CBS domain-containing protein-related, contains Pfam profile PF01595: Domain of unknown function, weak hit to PF00571: CBS domain [ 42568492 NP_200091.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21408966 CHROM_POS_END:21411553 } -=| MIDDLE_POINT:21410259 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 199 265 1 899 500 XLS3_Contig2789 AT3G25230 peptidyl-prolyl cis-trans isomerase / FK506-binding protein (ROF1), identical to rotamase FKBP (ROF1) GB:U49453 (Arabidopsis thaliana) (Mol. Gen. Genet. 252 (5), 510-517 (1996)) [ 30687816 NP_189160.3 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9189494 CHROM_POS_END:9192374 } -=| MIDDLE_POINT:9190934 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 209 270 1 1096 551 XLS3_Contig2790 AT4G19210 RNase L inhibitor protein, putative, similar to 68 kDa protein HP68 GI:16755057 from (Triticum aestivum) [ 22328793 NP_193656.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10501917 CHROM_POS_END:10504787 } -=| MIDDLE_POINT:10503352 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 89 211 237 1 930 605 XLS3_Contig2791 AT5G01010 expressed protein [ AT5G01010 42567551 NP_195721.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1527 CHROM_POS_END:4923 } -=| MIDDLE_POINT:3225 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.86 69 117 169 1 863 409 XLS3_Contig2792 AT1G43670 fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative, very strong similarity to SP|P46267 Fructose-1,6-bisphosphatase, cytosolic (EC 3.1.3.11) (D-fructose-1,6- bisphosphate 1-phosphohydrolase) (FBPase) {Brassica napus} [ 15218438 NP_175032.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16470624 CHROM_POS_END:16472787 } -=| MIDDLE_POINT:16471705 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 86 232 269 1 1080 341 XLS3_Contig2793 AT3G29360 UDP-glucose 6-dehydrogenase, putative, very strong similarity to SP|Q96558 UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH) {Glycine max} [ 15228687 NP_189582.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:11268612 CHROM_POS_END:11270054 } -=| MIDDLE_POINT:11269333 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 91 227 248 1 859 480 XLS3_Contig2794 AT3G09070 glycine-rich protein, similar to hypothetical protein GB:AAD32765 (Arabidopsis thaliana) [ 15232012 NP_187519.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2768885 CHROM_POS_END:2770942 } -=| MIDDLE_POINT:2769913 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.47 42 125 297 1 990 685 XLS3_Contig2795 AT5G15130 WRKY family transcription factor, contains Pfam profile: PF03106 WRKY DNA -binding domain [ 15242221 NP_197017.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4904429 CHROM_POS_END:4906882 } -=| MIDDLE_POINT:4905655 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.59 45 136 299 1 901 548 XLS3_Contig2796 AT5G47760 phosphoglycolate phosphatase, putative, similar to phosphoglycolate phosphatase precursor (Chlamydomonas reinhardtii) GI:15982558 [ 15238800 NP_199587.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19360347 CHROM_POS_END:19362205 } -=| MIDDLE_POINT:19361276 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 220 299 1 1021 301 XLS3_Contig2797 AT5G16990 NADP-dependent oxidoreductase, putative, strong similarity to probable NADP-dependent oxidoreductase (zeta-crystallin homolog) P1 (SP|Q39172)(gi:886428) and P2 (SP|Q39173)(gi:886430), Arabidopsis thaliana [ 15237890 NP_197201.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5581834 CHROM_POS_END:5583852 } -=| MIDDLE_POINT:5582843 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.82 67 148 220 1 887 343 XLS3_Contig2798 AT5G56900 CwfJ-like family protein / zinc finger (CCCH-type) family protein, contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar), PF04677: Protein similar to CwfJ C-terminus 1, PF04676: Protein similar to CwfJ C-terminus 2 [ 42573698 NP_974945.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:23036976 CHROM_POS_END:23039896 } -=| MIDDLE_POINT:23038436 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 196 294 1 976 593 XLS3_Contig2799 AT2G44140 autophagy 4a (APG4a), identical to autophagy 4a (Arabidopsis thaliana) gi|19912143|dbj|BAB88383 [ 30689628 NP_850412.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:18262182 CHROM_POS_END:18264241 } -=| MIDDLE_POINT:18263211 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 53 169 316 1 1548 467 XLS3_Contig2800 AT2G43560 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein, identical to Probable FKBP-type peptidyl-prolyl cis-trans isomerase 2, chloroplast precursor (Ppiase) (Rotamase) (SP:O22870)(Arabidopsis thaliana) [ 15224305 NP_181884.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18081072 CHROM_POS_END:18082462 } -=| MIDDLE_POINT:18081767 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.71 74 132 177 1 1334 223 XLS3_Contig2801 AT5G36950 DegP protease, putative, contains similarity to DegP2 protease GI:13172275 from (Arabidopsis thaliana) [ 18421592 NP_568543.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:14612222 CHROM_POS_END:14615446 } -=| MIDDLE_POINT:14613834 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.99 69 139 199 1 960 586 XLS3_Contig2802 AT4G18470 negative regulator of systemic acquired resistance (SNI1), identical to negative regulator of systemic acquired resistance SNI1 (Arabidopsis thaliana) gi|5758933|gb|AAD50900 [ 18415098 NP_567557.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10192995 CHROM_POS_END:10195522 } -=| MIDDLE_POINT:10194258 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.39 41 96 233 1 896 432 XLS3_Contig2803 no_hits_found 0 0 XLS3_Contig2804 AT1G77670 aminotransferase class I and II family protein, similar to kynurenine aminotransferase /glutamine transaminase K GI:1030066 (Rattus norvegicus) [ 15217440 NP_177890.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:29193937 CHROM_POS_END:29195795 } -=| MIDDLE_POINT:29194866 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.47 38 116 304 1 932 440 XLS3_Contig2805 AT2G34560 katanin, putative, similar to katanin p60 subunit (Strongylocentrotus purpuratus) GI:3098603 [ 42571053 NP_973600.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:14567345 CHROM_POS_END:14569774 } -=| MIDDLE_POINT:14568559 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 199 269 1 1089 393 XLS3_Contig2806 AT5G03040 calmodulin-binding family protein, similar to SF16 protein (Helianthus annuus) GI:560150 [ 18414094 NP_568110.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:710889 CHROM_POS_END:712405 } -=| MIDDLE_POINT:711647 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.69 53 146 275 1 891 291 XLS3_Contig2807 AT3G61440 cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative, identical to cysteine synthase (EC 4.2.99.8) (Arabidopsis thaliana) GI:5824334 [ 15233111 NP_191703.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22746860 CHROM_POS_END:22748767 } -=| MIDDLE_POINT:22747813 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 190 238 1 903 368 XLS3_Contig2808 AT1G23190 phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative, strong similarity to SP|P93805 Phosphoglucomutase, cytoplasmic 2 (EC 5.4.2.2) (Glucose phosphomutase 2) (PGM 2) {Zea mays} [ 15220668 NP_173732.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8219935 CHROM_POS_END:8224175 } -=| MIDDLE_POINT:8222055 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 235 282 1 897 583 XLS3_Contig2809 AT3G21760 UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase [ 15233151 NP_188813.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7667106 CHROM_POS_END:7668563 } -=| MIDDLE_POINT:7667834 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.49 40 120 294 1 863 485 XLS3_Contig2810 AT5G66080 protein phosphatase 2C family protein / PP2C family protein, similar to Ser/Thr protein phosphatase 2C (PP2C6) (GI:15020818) (Arabidopsis thaliana) [ 15239244 NP_201409.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26440803 CHROM_POS_END:26442257 } -=| MIDDLE_POINT:26441530 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 251 343 1 1432 385 XLS3_Contig2811 AT1G55730 cation exchanger, putative (CAX5), similar to low affinity calcium antiporter CAX2 (Arabidopsis thaliana) gi|1488267|gb|AAB05914 [ 30696001 NP_175969.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:20835053 CHROM_POS_END:20837607 } -=| MIDDLE_POINT:20836330 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 201 313 1 967 441 XLS3_Contig2812 no_hits_found 0 0 XLS3_Contig2813 AT3G51630 protein kinase family protein, contains Pfam profile: PF00069 protein kinase domain [ 30693513 NP_566954.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19160466 CHROM_POS_END:19162903 } -=| MIDDLE_POINT:19161684 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 216 273 1 937 549 XLS3_Contig2814 AT2G45470 fasciclin-like arabinogalactan-protein (FLA8) [ AT2G45470 18406799 NP_566043.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18749871 CHROM_POS_END:18751133 } -=| MIDDLE_POINT:18750502 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 259 356 1 1154 420 XLS3_Contig2815 no_hits_found 0 0 XLS3_Contig2816 AT2G38400 alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative, similar to SP|Q64565 Alanine--glyoxylate aminotransferase 2, mitochondrial precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate aminotransferase) {Rattus norvegicus} [ 15224499 NP_181374.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16090857 CHROM_POS_END:16093052 } -=| MIDDLE_POINT:16091954 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 201 288 1 884 477 XLS3_Contig2817 AT1G53020 ubiquitin-conjugating enzyme family protein, similar to ubiquitin-conjugating enzyme GB:3319990 from (Mus musculus) [ 15219165 NP_175710.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19755040 CHROM_POS_END:19763142 } -=| MIDDLE_POINT:19759091 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.69 59 84 142 1 1096 1163 XLS3_Contig2818 AT3G51850 calcium-dependent protein kinase, putative / CDPK, putative, similar to calcium-dependent protein kinase (Arabidopsis thaliana) gi|836942|gb|AAA67655 [ 22331739 NP_190753.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19243644 CHROM_POS_END:19246503 } -=| MIDDLE_POINT:19245073 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.89 85 164 191 1 864 528 XLS3_Contig2819 AT5G47810 phosphofructokinase family protein, similar to phosphofructokinase (Amycolatopsis methanolica) GI:17432243 [ 15238818 NP_199592.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19373795 CHROM_POS_END:19375215 } -=| MIDDLE_POINT:19374505 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 189 262 1 896 444 XLS3_Contig2820 AT4G12490 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein, similar to pEARLI 1 (Accession No. L43080): an Arabidopsis member of a conserved gene family (PGF95-099), Plant Physiol. 109 (4), 1497 (1995) [ 15235388 NP_192986.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7409827 CHROM_POS_END:7410375 } -=| MIDDLE_POINT:7410101 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.45 54 99 183 1 697 182 XLS3_Contig2821 AT3G50660 steroid 22-alpha-hydroxylase (CYP90B1) (DWF4), identical to gi:2935342 [ 15229822 NP_190635.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18825243 CHROM_POS_END:18828149 } -=| MIDDLE_POINT:18826696 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 185 241 1 917 513 XLS3_Contig2822 AT1G51560 expressed protein [ AT1G51560 15217955 NP_175567.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:19123568 CHROM_POS_END:19125527 } -=| MIDDLE_POINT:19124547 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.69 81 123 151 1 912 392 XLS3_Contig2823 AT1G51760 IAA-amino acid hydrolase 3 / IAA-Ala hydrolase 3 (IAR3), identical to IAA-Ala hydrolase (IAR3) (Arabidopsis thaliana) GI:3421384 [ 15218027 NP_175587.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19203231 CHROM_POS_END:19205093 } -=| MIDDLE_POINT:19204162 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 193 268 1 892 440 XLS3_Contig2824 AT3G54970 expressed protein [ AT3G54970 18410169 NP_567011.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:20379306 CHROM_POS_END:20381047 } -=| MIDDLE_POINT:20380176 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.62 51 140 270 1 1249 353 XLS3_Contig2825 AT5G20520 expressed protein [ AT5G20520 18420236 NP_568395.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6943538 CHROM_POS_END:6946317 } -=| MIDDLE_POINT:6944927 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 213 259 1 949 308 XLS3_Contig2826 AT5G17050 UDP-glucoronosyl/UDP-glucosyl transferase family protein, similar to UDP glucose:flavonoid 3-o-glucosyltransferase, Vitis vinifera, EMBL:AF000372 [ 15237899 NP_197207.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5607831 CHROM_POS_END:5609395 } -=| MIDDLE_POINT:5608613 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.76 51 145 281 1 924 460 XLS3_Contig2827 AT5G50320 radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein, contains Pfam profiles PF00583: acetyltransferase, GNAT family, PF04055: Radical SAM superfamily [ 18423134 NP_568725.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20498426 CHROM_POS_END:20502037 } -=| MIDDLE_POINT:20500231 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 87 234 267 1 900 565 XLS3_Contig2828 AT4G34660 SH3 domain-containing protein 2 (SH3P2), nearly identical to SH3 domain-containing protein 2 (Arabidopsis thaliana) GI:16974678 [ 18418491 NP_567969.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16545600 CHROM_POS_END:16548299 } -=| MIDDLE_POINT:16546949 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 201 289 1 968 368 XLS3_Contig2829 AT3G46290 protein kinase, putative, similar to receptor-like protein kinase (Catharanthus roseus) gi|1644291|emb|CAA97692 [ 15231393 NP_190214.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17023994 CHROM_POS_END:17026486 } -=| MIDDLE_POINT:17025240 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.54 42 125 295 1 940 830 XLS3_Contig2830 AT5G46560 expressed protein [ AT5G46560 30694990 NP_199468.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18905288 CHROM_POS_END:18907317 } -=| MIDDLE_POINT:18906302 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.29 40 69 172 1 926 378 XLS3_Contig2831 AT2G36430 expressed protein, contains Pfam profile PF03140: Plant protein of unknown function [ 15227658 NP_181184.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15297290 CHROM_POS_END:15298636 } -=| MIDDLE_POINT:15297963 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 55 200 360 1 1224 448 XLS3_Contig2832 AT3G26130 glycosyl hydrolase family 5 protein / cellulase family protein, contains Pfam profile: PF00150 cellulase (glycosyl hydrolase family 5) [ 15231513 NP_189244.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9554945 CHROM_POS_END:9556848 } -=| MIDDLE_POINT:9555896 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 63 209 328 1 1149 551 XLS3_Contig2833 AT3G58630 expressed protein, similar to 6b-interacting protein 1 (NtSIP1) (Nicotiana tabacum) GI:18149189 [ 30694843 NP_191422.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21694905 CHROM_POS_END:21696748 } -=| MIDDLE_POINT:21695826 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.47 48 107 221 1 892 321 XLS3_Contig2834 AT5G23280 TCP family transcription factor, putative, similar to PCF2 ((GI:2580440) Oryza sativa) [ 15237274 NP_197719.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7843020 CHROM_POS_END:7843772 } -=| MIDDLE_POINT:7843396 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.72 64 154 239 1 992 250 XLS3_Contig2835 AT3G14490 terpene synthase/cyclase family protein, contains Pfam profile: PF01397 terpene synthase family [ 15231866 NP_188067.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4863638 CHROM_POS_END:4865956 } -=| MIDDLE_POINT:4864797 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.63 40 118 288 1 1083 601 XLS3_Contig2836 AT4G33030 UDP-sulfoquinovose synthase / sulfite:UDP-glucose sulfotransferase / sulfolipid biosynthesis protein (SQD1), identical to gi:2736155 [ 15234041 NP_195029.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15936054 CHROM_POS_END:15937569 } -=| MIDDLE_POINT:15936811 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.91 66 171 256 1 917 477 XLS3_Contig2837 AT5G19280 kinase associated protein phosphatase (KAPP), identical to Kinase associated protein phosphatase (SP:P46014) (Arabidopsis thaliana) [ 15239690 NP_197429.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6488452 CHROM_POS_END:6493184 } -=| MIDDLE_POINT:6490818 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.49 44 112 251 1 1072 581 XLS3_Contig2838 no_hits_found 0 0 XLS3_Contig2839 AT5G22330 TATA box-binding protein-interacting protein-related, similar to TATA box-binding protein-interacting protein SP:O35753 from ( Mus musculus) [ 15242217 NP_197625.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7391029 CHROM_POS_END:7394074 } -=| MIDDLE_POINT:7392551 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 91 236 259 1 894 458 XLS3_Contig2840 AT1G07880 similar to mitogen-activated protein kinase, putative / MAPK, putative (MPK6) [Arabidopsis thaliana] (TAIR:At2g43790.1) [ 79317218 NP_001030990.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2434190 CHROM_POS_END:2435709 } -=| MIDDLE_POINT:2434949 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 266 334 1 1224 363 XLS3_Contig2841 AT4G26450 expressed protein [ AT4G26450 15236196 NP_194375.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:13362564 CHROM_POS_END:13368686 } -=| MIDDLE_POINT:13365625 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.27 36 84 228 1 903 1248 XLS3_Contig2842 AT5G02930 F-box family protein, low similarity to ribosomal RNA apurinic site specific lyase (Triticum aestivum) GI:6505722 [ 15242568 NP_195913.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:682575 CHROM_POS_END:684478 } -=| MIDDLE_POINT:683526 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.21 33 67 203 1 937 469 XLS3_Contig2843 AT2G03120 signal peptide peptidase family protein, contains Pfam domain PF04258: Membrane protein of unknown function (DUF435) [ 18395487 NP_565294.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:937551 CHROM_POS_END:940080 } -=| MIDDLE_POINT:938815 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 187 220 1 989 344 XLS3_Contig2844 AT5G23570 XS domain-containing protein / XS zinc finger domain-containing protein-related, contains Pfam profiles PF03468: XS domain, weak hit to PF03470: XS zinc finger domain [ 15237789 NP_197747.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7943624 CHROM_POS_END:7945877 } -=| MIDDLE_POINT:7944750 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.3 56 62 109 1 1619 625 XLS3_Contig2845 AT5G23210 similar to serine carboxypeptidase S10 family protein [Arabidopsis thaliana] (TAIR:At5g08260.1) [ 79599038 NP_851062.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7810895 CHROM_POS_END:7814840 } -=| MIDDLE_POINT:7812867 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 194 270 1 959 499 XLS3_Contig2846 AT2G19480 nucleosome assembly protein (NAP), putative, similar to nucleosome assembly protein 1 (Glycine max) GI:1161252 [ 15224782 NP_179538.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8445683 CHROM_POS_END:8448122 } -=| MIDDLE_POINT:8446902 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 184 249 1 927 379 XLS3_Contig2847 AT5G66470 expressed protein [ AT5G66470 22328152 NP_201448.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26559212 CHROM_POS_END:26561528 } -=| MIDDLE_POINT:26560370 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.99 69 184 264 1 911 427 XLS3_Contig2848 AT1G75130 cytochrome P450 family protein, similar to Cytochrome P450 72A1 (SP:Q05047) (Catharanthus roseus) [ 15222125 NP_177649.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:28203734 CHROM_POS_END:28205572 } -=| MIDDLE_POINT:28204653 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 48 201 412 1 1254 505 XLS3_Contig2849 no_hits_found 0 0 XLS3_Contig2850 AT4G36195 serine carboxypeptidase S28 family protein, contains Pfam PF05577: Serine carboxypeptidase S28 [ 18419800 NP_567999.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17127205 CHROM_POS_END:17129790 } -=| MIDDLE_POINT:17128497 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.94 66 169 255 1 959 488 XLS3_Contig2851 AT3G19820 cell elongation protein / DWARF1 / DIMINUTO (DIM), identical to GB:S71189 (SP|Q39085) from (Arabidopsis thaliana) [ 15230955 NP_188616.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:6879841 CHROM_POS_END:6881622 } -=| MIDDLE_POINT:6880731 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 349 438 1 1459 561 XLS3_Contig2852 AT2G20760 expressed protein [ AT2G20760 18399468 NP_565484.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8950360 CHROM_POS_END:8952189 } -=| MIDDLE_POINT:8951274 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.72 55 151 270 1 970 338 XLS3_Contig2853 no_hits_found 0 0 XLS3_Contig2854 AT4G39170 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative, similar to phosphatidylinositol transfer-like protein IV (GI:14486707) (Lotus japonicus) and phosphatidylinositol-phosphatidylcholine transfer protein SEC14, Yarrowia lipolytica, PIR2:S43745 [ 18420392 NP_568054.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18240881 CHROM_POS_END:18243615 } -=| MIDDLE_POINT:18242248 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.92 78 164 210 1 877 614 XLS3_Contig2855 AT5G30510 30S ribosomal protein S1, putative, similar to Swiss-Prot:P29344 30S ribosomal protein S1, chloroplast precursor (CS1) (Spinacia oleracea) [ 30692346 NP_850903.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11636492 CHROM_POS_END:11638453 } -=| MIDDLE_POINT:11637472 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 235 305 1 959 416 XLS3_Contig2856 AT2G32070 CCR4-NOT transcription complex protein, putative, similar to SWISS-PROT:Q60809 CCR4-NOT transcription complex, subunit 7 (CCR4-associated factor 1, (CAF1) (Mus musculus) [ 18402869 NP_565735.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13647906 CHROM_POS_END:13648733 } -=| MIDDLE_POINT:13648319 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.95 71 157 219 1 905 275 XLS3_Contig2857 AT4G17950 DNA-binding family protein, contains Pfam PF03479: Domain of unknown function (DUF296) [ 18414996 NP_567546.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9967307 CHROM_POS_END:9969019 } -=| MIDDLE_POINT:9968163 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.39 41 110 267 1 820 439 XLS3_Contig2858 AT5G66680 dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein, similar to SP|Q05052 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit precursor (EC 2.4.1.119) (Oligosaccharyl transferase 48 kDa subunit) {Canis familiaris} [ 18425101 NP_569038.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26635066 CHROM_POS_END:26637807 } -=| MIDDLE_POINT:26636436 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 193 273 1 856 437 XLS3_Contig2859 AT2G33150 acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative, similar to 3-ketoacyl-CoA thiolase (E.C. 2.3.1.16) from (Arabidopsis thaliana) GI:2981616, (Cucumis sativus) GI:393707, (Cucurbita cv. Kurokawa Amakuri) GI:1694621 [ 15225798 NP_180873.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14054891 CHROM_POS_END:14058060 } -=| MIDDLE_POINT:14056475 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 324 386 1 1291 462 XLS3_Contig2860 AT5G24810 ABC1 family protein, contains Pfam domain, PF03109: ABC1 family [ 18420844 NP_568458.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8516905 CHROM_POS_END:8522619 } -=| MIDDLE_POINT:8519762 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.86 70 87 123 1 827 1009 XLS3_Contig2861 AT5G45620 26S proteasome regulatory subunit, putative (RPN9), contains similarity to 26S proteasome subunit p40.5 GI:3618343 from (Homo sapiens) [ 22327608 NP_199375.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:18518817 CHROM_POS_END:18521095 } -=| MIDDLE_POINT:18519956 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 238 284 1 993 386 XLS3_Contig2862 AT2G22795 expressed protein [ AT2G22795 30681829 NP_850032.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9704460 CHROM_POS_END:9706664 } -=| MIDDLE_POINT:9705562 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.22 23 131 569 1 1735 734 XLS3_Contig2863 AT1G35620 thioredoxin family protein, similar to SP|Q43116 Protein disulfide isomerase precursor (PDI) (EC 5.3.4.1) {Ricinus communis} [ 18399786 NP_564462.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:13156482 CHROM_POS_END:13158258 } -=| MIDDLE_POINT:13157370 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 189 286 1 914 440 XLS3_Contig2864 AT4G13710 pectate lyase family protein [ AT4G13710 18414063 NP_567409.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7962546 CHROM_POS_END:7966008 } -=| MIDDLE_POINT:7964277 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.87 67 158 233 1 858 470 XLS3_Contig2865 AT3G01750 ankyrin repeat family protein, contains ankyrin repeats, Pfam:PF00023 [ 15232175 NP_186824.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:270622 CHROM_POS_END:272698 } -=| MIDDLE_POINT:271660 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 195 291 1 1041 664 XLS3_Contig2866 AT4G14880 cysteine synthase / O-acetylserine (thiol)-lyase / O-acetylserine sulfhydrylase (OAS1), nearly identical to SP|P47998 Cysteine synthase (EC 4.2.99.8) (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) {Arabidopsis thaliana} [ 15233613 NP_193224.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:8518204 CHROM_POS_END:8520045 } -=| MIDDLE_POINT:8519124 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 88 242 274 1 984 322 XLS3_Contig2867 AT1G08200 expressed protein [ AT1G08200 18390863 NP_563807.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2574256 CHROM_POS_END:2576606 } -=| MIDDLE_POINT:2575431 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 90 264 293 1 1031 389 XLS3_Contig2868 AT3G47610 expressed protein [ AT3G47610 15228204 NP_190345.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17560163 CHROM_POS_END:17562189 } -=| MIDDLE_POINT:17561176 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.99 67 190 281 1 923 408 XLS3_Contig2869 AT5G13980 similar to glycosyl hydrolase family 38 protein [Arabidopsis thaliana] (TAIR:At3g26720.1) [ 79598781 NP_851037.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4508628 CHROM_POS_END:4514336 } -=| MIDDLE_POINT:4511482 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 202 260 1 857 1024 XLS3_Contig2870 AT5G01010 expressed protein [ AT5G01010 42567551 NP_195721.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1527 CHROM_POS_END:4923 } -=| MIDDLE_POINT:3225 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 272 420 1 1541 409 XLS3_Contig2871 AT5G15800 developmental protein SEPALLATA1 / floral homeotic protein (AGL2) (SEP1), identical to developmental protein SEPALLATA1 / floral homeotic protein (AGL2 / SEP1) SP:P29382 from (Arabidopsis thaliana) [ 18417790 NP_568322.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5151597 CHROM_POS_END:5153770 } -=| MIDDLE_POINT:5152683 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.71 75 132 174 1 824 251 XLS3_Contig2872 no_hits_found 0 0 XLS3_Contig2873 AT3G57330 calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA11), identical to SP|Q9M2L4|ACAB_ARATH Potential calcium-transporting ATPase 11, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 11) {Arabidopsis thaliana} [ 15230278 NP_191292.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21222633 CHROM_POS_END:21227353 } -=| MIDDLE_POINT:21224993 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 289 380 1 1144 1025 XLS3_Contig2874 AT1G73390 expressed protein [ AT1G73390 15219459 NP_177482.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:27594740 CHROM_POS_END:27597809 } -=| MIDDLE_POINT:27596274 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.63 74 106 143 1 872 419 XLS3_Contig2875 AT3G21690 MATE efflux family protein, similar to ripening regulated protein DDTFR18 (Lycopersicon esculentum) GI:12231296 [ 15233127 NP_188806.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7638757 CHROM_POS_END:7641868 } -=| MIDDLE_POINT:7640312 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.82 62 156 251 1 798 506 XLS3_Contig2876 AT2G05990 enoyl-(acyl-carrier protein) reductase (NADH), chloroplast, putative / NADH-dependent enoyl-ACP reductase, putative, strong similarity to enoyl-(acyl-carrier protein) reductase (NADH) SP:P80030 from (Brassica napus) [ 18396215 NP_565331.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2322873 CHROM_POS_END:2324864 } -=| MIDDLE_POINT:2323868 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 200 281 1 1013 390 XLS3_Contig2877 AT5G59700 protein kinase, putative, similar to receptor-like protein kinase (Catharanthus roseus) gi|1644291|emb|CAA97692 [ 15238498 NP_200778.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:24069839 CHROM_POS_END:24072328 } -=| MIDDLE_POINT:24071083 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.49 49 104 211 1 867 829 XLS3_Contig2878 no_hits_found 0 0 XLS3_Contig2879 AT1G75230 HhH-GPD base excision DNA repair family protein, contains Pfam domain PF00730: HhH-GPD superfamily base excision DNA repair protein [ 42572113 NP_974147.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:28238105 CHROM_POS_END:28239289 } -=| MIDDLE_POINT:28238697 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.67 51 144 278 1 989 394 XLS3_Contig2880 AT2G28760 NAD-dependent epimerase/dehydratase family protein, similar to UDP-glucuronic acid decarboxylase Uxs1p from Filobasidiella neoformans GI:14318327 [ 42570963 NP_973555.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:12343546 CHROM_POS_END:12345719 } -=| MIDDLE_POINT:12344632 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 87 235 268 1 870 343 XLS3_Contig2881 AT5G35670 calmodulin-binding family protein, contains IQ calmodulin-binding motif, Pfam:PF00612 [ 18421483 NP_568529.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:13873400 CHROM_POS_END:13875140 } -=| MIDDLE_POINT:13874270 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.59 46 152 324 1 903 442 XLS3_Contig2882 AT1G60670 expressed protein, similar to expressed protein [Arabidopsis thaliana] (TAIR:At1g10820.2) [ 79367209 NP_564760.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22347764 CHROM_POS_END:22350438 } -=| MIDDLE_POINT:22349101 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.23 49 64 129 1 1112 201 XLS3_Contig2883 AT1G74270 60S ribosomal protein L35a (RPL35aC), similar to ribosomal protein L33B GB:NP_014877 from (Saccharomyces cerevisiae) [ 15221191 NP_177567.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:27932076 CHROM_POS_END:27933127 } -=| MIDDLE_POINT:27932601 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.59 92 104 112 1 760 112 XLS3_Contig2884 AT4G01290 expressed protein [ AT4G01290 30678857 NP_192038.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:538213 CHROM_POS_END:543282 } -=| MIDDLE_POINT:540747 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.26 31 119 374 1 1052 991 XLS3_Contig2885 AT5G54390 inositol monophosphatase family protein, similar to SP|Q42546 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) {Arabidopsis thaliana} [ 15239631 NP_200250.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:22103359 CHROM_POS_END:22104812 } -=| MIDDLE_POINT:22104085 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.79 58 153 262 1 899 373 XLS3_Contig2886 AT1G72680 cinnamyl-alcohol dehydrogenase, putative, similar to cinnamyl-alcohol dehydrogenase GB:AAC35846 (Medicago sativa), SP|Q08350 (Picea abies) [ 15218564 NP_177412.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:27363008 CHROM_POS_END:27364538 } -=| MIDDLE_POINT:27363773 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 181 235 1 879 355 XLS3_Contig2887 AT5G64810 WRKY family transcription factor, contains Pfam profile: PF03106 WRKY DNA -binding domain [ 22328061 NP_568995.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:25925641 CHROM_POS_END:25926913 } -=| MIDDLE_POINT:25926277 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.26 69 49 71 1 714 194 XLS3_Contig2888 AT2G35800 mitochondrial substrate carrier family protein, contains INTERPRO:IPR001993 Mitochondrial substrate carrier family, INTERPRO:IPR002048 calcium-binding EF-hand domain [ 30686563 NP_850252.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15051516 CHROM_POS_END:15055431 } -=| MIDDLE_POINT:15053473 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 282 336 1 1010 823 XLS3_Contig2889 AT3G16810 pumilio/Puf RNA-binding domain-containing protein, contains Pfam profile:PF00806 Pumilio-family RNA binding domains [ 18401257 NP_566559.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5723442 CHROM_POS_END:5727545 } -=| MIDDLE_POINT:5725493 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.71 56 152 268 1 917 641 XLS3_Contig2890 AT1G12900 glyceraldehyde 3-phosphate dehydrogenase, chloroplast, putative / NADP-dependent glyceraldehydephosphate dehydrogenase, putative, similar to SP|P25856 Glyceraldehyde 3-phosphate dehydrogenase A, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) {Arabidopsis thaliana} [ 15222111 NP_172750.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4392632 CHROM_POS_END:4394281 } -=| MIDDLE_POINT:4393456 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 256 299 1 896 399 XLS3_Contig2891 AT4G02010 protein kinase family protein, contains protein kinase domain, Pfam:PF00069 [ 30679031 NP_192110.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:881457 CHROM_POS_END:885222 } -=| MIDDLE_POINT:883339 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.2 40 61 149 1 941 725 XLS3_Contig2892 AT3G19420 expressed protein [ AT3G19420 15230379 NP_188573.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6731830 CHROM_POS_END:6735360 } -=| MIDDLE_POINT:6733595 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.87 68 165 240 1 920 611 XLS3_Contig2893 AT3G53570 protein kinase (AFC1) (AME2), identical to protein kinase AFC1 (EC 2.7.1.-) (Arabidopsis thaliana) [ 42570490 NP_850695.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:19872427 CHROM_POS_END:19875103 } -=| MIDDLE_POINT:19873765 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 220 285 1 944 467 XLS3_Contig2894 AT1G74460 GDSL-motif lipase/hydrolase family protein, similar to family II lipases EXL3 GI:15054386, EXL1 GI:15054382, EXL2 GI:15054384 from (Arabidopsis thaliana) [ 15221260 NP_177586.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:27991811 CHROM_POS_END:27993426 } -=| MIDDLE_POINT:27992618 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.31 30 89 289 1 912 366 XLS3_Contig2895 AT5G01960 zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) [ 18413797 NP_568096.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:370808 CHROM_POS_END:372772 } -=| MIDDLE_POINT:371790 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 61 273 442 1 1574 426 XLS3_Contig2896 AT5G14060 aspartate kinase, lysine-sensitive, nearly identical to gi:2257743 [ 15241295 NP_196910.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4536145 CHROM_POS_END:4538995 } -=| MIDDLE_POINT:4537570 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.44 58 81 139 1 896 544 XLS3_Contig2897 AT1G34470 permease-related, low similarity to purine permease (Arabidopsis thaliana) GI:7620007 [ 18399280 NP_564447.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:12604552 CHROM_POS_END:12606736 } -=| MIDDLE_POINT:12605644 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 222 270 1 1159 368 XLS3_Contig2898 no_hits_found 0 0 XLS3_Contig2899 AT5G65910 BSD domain-containing protein, contains Pfam profile PF03909: BSD domain [ 18425006 NP_569021.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26378818 CHROM_POS_END:26380567 } -=| MIDDLE_POINT:26379692 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.74 53 142 263 1 1025 432 XLS3_Contig2900 AT5G17690 like heterochromatin protein (LHP1), identical to like heterochromatin protein LHP1 (Arabidopsis thaliana) GI:15625407 [ 15238009 NP_197271.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5827506 CHROM_POS_END:5829539 } -=| MIDDLE_POINT:5828522 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.37 47 93 197 1 927 445 XLS3_Contig2901 AT2G19270 expressed protein [ AT2G19270 15224752 NP_179517.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8367431 CHROM_POS_END:8368989 } -=| MIDDLE_POINT:8368210 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.26 33 94 278 1 984 359 XLS3_Contig2902 AT5G26751 shaggy-related protein kinase alpha / ASK-alpha (ASK1), identical to shaggy-related protein kinase alpha SP:P43288 GI:460832 from (Arabidopsis thaliana) [ 18421039 NP_568486.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9399585 CHROM_POS_END:9401842 } -=| MIDDLE_POINT:9400713 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 188 220 1 960 405 XLS3_Contig2903 AT1G11910 aspartyl protease family protein, contains Pfam profiles: PF00026 eukaryotic aspartyl protease, PF03489 surfactant protein B, PF05184 saposin-like type B, region 1 [ 15221141 NP_172655.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4017117 CHROM_POS_END:4019872 } -=| MIDDLE_POINT:4018494 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 206 296 1 968 506 XLS3_Contig2904 AT1G76490 similar to 3-hydroxy-3-methylglutaryl-CoA reductase 2 / HMG-CoA reductase 2 (HMGR2) [Arabidopsis thaliana] (TAIR:At2g17370.1) [ 79382641 NP_177775.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:28700695 CHROM_POS_END:28703100 } -=| MIDDLE_POINT:28701897 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.85 53 165 308 1 879 642 XLS3_Contig2905 AT1G20200 26S proteasome regulatory subunit S3, putative (RPN3), similar to SP:Q06364 from (Daucus carota) [ 15223800 NP_173447.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7001400 CHROM_POS_END:7004145 } -=| MIDDLE_POINT:7002772 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 376 459 1 1428 488 XLS3_Contig2906 AT1G15000 serine carboxypeptidase S10 family protein, similar to Serine carboxypeptidase precursor (SP:P32826) (Arabidopsis thaliana) [ 15223991 NP_172953.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5168608 CHROM_POS_END:5169942 } -=| MIDDLE_POINT:5169275 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.83 53 153 285 1 874 444 XLS3_Contig2907 AT5G19300 expressed protein, contains Pfam profile PF02598: Uncharacterized ACR, COG2106 [ 42567956 NP_197431.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6495595 CHROM_POS_END:6497989 } -=| MIDDLE_POINT:6496792 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.97 61 182 296 1 954 398 XLS3_Contig2908 AT5G49630 amino acid permease 6 (AAP6), identical to amino acid permease 6 (AAP6) (Arabidopsis thaliana) GI:1769887 [ 15240523 NP_199774.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20159907 CHROM_POS_END:20163667 } -=| MIDDLE_POINT:20161787 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 210 266 1 918 481 XLS3_Contig2909 AT2G35530 bZIP transcription factor family protein, contains Pfam domain PF00170: bZIP transcription factor [ 42570366 NP_850248.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14930359 CHROM_POS_END:14933104 } -=| MIDDLE_POINT:14931731 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.8 61 158 258 1 1030 409 XLS3_Contig2910 AT1G68190 zinc finger (B-box type) family protein [ AT1G68190 15221299 NP_176986.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:25563047 CHROM_POS_END:25564667 } -=| MIDDLE_POINT:25563857 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.35 42 71 168 1 1017 356 XLS3_Contig2911 AT1G18610 kelch repeat-containing protein, contains Pfam profile PF01344: Kelch motif [ 15221823 NP_173296.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6405771 CHROM_POS_END:6408823 } -=| MIDDLE_POINT:6407297 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.91 59 153 259 1 911 572 XLS3_Contig2912 AT1G67630 DNA polymerase alpha subunit B family, contains Pfam profile: PF04058 DNA polymerase alpha subunit B [ 30697540 NP_176930.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:25348236 CHROM_POS_END:25351950 } -=| MIDDLE_POINT:25350093 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.71 46 89 191 1 930 620 XLS3_Contig2913 AT1G23890 NHL repeat-containing protein, contains Pfam profile PF01436: NHL repeat [ 42571623 NP_973902.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:8438889 CHROM_POS_END:8440792 } -=| MIDDLE_POINT:8439840 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.63 52 117 224 1 865 400 XLS3_Contig2914 AT1G75500 nodulin MtN21 family protein, similar to MtN21 GB:CAA75575 GI:2598575 from (Medicago truncatula) (Mol. Plant Microbe Interact. 9 (4), 233-242 (1996)) [ 18410867 NP_565111.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:28341943 CHROM_POS_END:28343752 } -=| MIDDLE_POINT:28342847 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 215 287 1 952 389 XLS3_Contig2915 AT5G46410 NLI interacting factor (NIF) family protein, contains Pfam profile PF03031: NLI interacting factor [ 22327621 NP_199453.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18843234 CHROM_POS_END:18845383 } -=| MIDDLE_POINT:18844308 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.62 39 157 402 1 1241 453 XLS3_Contig2916 AT5G09330 no apical meristem (NAM) family protein, similar to NAC1 (GI:7716952) {Medicago truncatula} [ 15242390 NP_196495.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2892624 CHROM_POS_END:2894709 } -=| MIDDLE_POINT:2893666 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.67 59 114 193 1 869 489 XLS3_Contig2917 AT1G01140 CBL-interacting protein kinase 9 (CIPK9), identical to CBL-interacting protein kinase 9 (Arabidopsis thaliana) gi|13249117|gb|AAK16684 [ 30677901 NP_849571.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:64398 CHROM_POS_END:67512 } -=| MIDDLE_POINT:65955 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 263 347 1 1303 451 XLS3_Contig2918 AT3G18270 mandelate racemase/muconate lactonizing enzyme family protein, low similarity to cis,cis-muconate lactonizing enzyme (Burkholderia sp. TH2) GI:23491535 [ 18401824 NP_566605.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6262016 CHROM_POS_END:6264031 } -=| MIDDLE_POINT:6263023 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 183 271 1 1013 410 XLS3_Contig2919 AT1G14810 semialdehyde dehydrogenase family protein, similar to SP:O31219 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (ASA dehydrogenase) (ASADH) {Legionella pneumophila} [ 15223910 NP_172934.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5102679 CHROM_POS_END:5104628 } -=| MIDDLE_POINT:5103653 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 81 223 275 1 914 375 XLS3_Contig2920 AT3G21465 expressed protein [ AT3G21465 42565082 NP_188783.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7560756 CHROM_POS_END:7563208 } -=| MIDDLE_POINT:7561982 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.76 53 141 266 1 940 388 XLS3_Contig2921 AT2G16660 nodulin family protein, similar to nodulin-like protein (Arabidopsis thaliana) GI:3329368, nodule-specific protein Nlj70 (Lotus japonicus) GI:3329366 [ 15227274 NP_179257.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7226012 CHROM_POS_END:7228674 } -=| MIDDLE_POINT:7227343 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 194 267 1 877 546 XLS3_Contig2922 AT5G61290 flavin-containing monooxygenase family protein / FMO family protein, low similarity to FMO3 from Homo sapiens (SP|P31513) [ 15240198 NP_200937.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:24665825 CHROM_POS_END:24667873 } -=| MIDDLE_POINT:24666849 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 190 269 1 853 461 XLS3_Contig2923 AT3G47520 malate dehydrogenase (NAD), chloroplast (MDH), identical to chloroplast NAD-malate dehydrogenase (Arabidopsis thaliana) GI:3256066 [ 15232820 NP_190336.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17524642 CHROM_POS_END:17525853 } -=| MIDDLE_POINT:17525247 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.97 65 152 233 1 856 403 XLS3_Contig2924 AT1G14380 calmodulin-binding family protein, contains Pfam profile PF00612: IQ calmodulin-binding motif [ 18394111 NP_563950.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4918274 CHROM_POS_END:4920756 } -=| MIDDLE_POINT:4919515 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.39 43 107 246 1 881 664 XLS3_Contig2925 AT5G64380 fructose-1,6-bisphosphatase family protein, similar to SP|P22418 Fructose-1,6-bisphosphatase, chloroplast precursor (EC 3.1.3.11) (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase) {Spinacia oleracea} [ 15237685 NP_201243.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:25758568 CHROM_POS_END:25760250 } -=| MIDDLE_POINT:25759409 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.81 61 169 275 1 838 404 XLS3_Contig2926 AT5G12410 THUMP domain-containing protein, contains Pfam profile PF02926: THUMP domain [ 18416857 NP_568274.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4021975 CHROM_POS_END:4023951 } -=| MIDDLE_POINT:4022963 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.66 50 140 278 1 907 376 XLS3_Contig2927 AT2G35490 plastid-lipid associated protein PAP, putative, similar to plastid-lipid associated protein PAP3 (Brassica rapa) GI:14248552 [ 15227428 NP_181092.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14919388 CHROM_POS_END:14920876 } -=| MIDDLE_POINT:14920132 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.75 52 164 313 1 967 376 XLS3_Contig2928 AT5G27470 seryl-tRNA synthetase / serine--tRNA ligase, identical to SP|Q39230 Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS) {Arabidopsis thaliana} [ 15240939 NP_198099.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9695090 CHROM_POS_END:9697157 } -=| MIDDLE_POINT:9696123 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 180 240 1 955 451 XLS3_Contig2929 AT4G18390 TCP family transcription factor, putative, similar to TFPD (GI:6681577) (Arabidopsis thaliana) [ 18415079 NP_567553.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:10163223 CHROM_POS_END:10164320 } -=| MIDDLE_POINT:10163771 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.45 49 127 257 1 1033 365 XLS3_Contig2930 no_hits_found 0 0 XLS3_Contig2931 AT5G51550 phosphate-responsive 1 family protein, similar to phi-1 (phosphate-induced gene) (Nicotiana tabacum) GI:3759184 [ 15242118 NP_199968.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20957019 CHROM_POS_END:20958032 } -=| MIDDLE_POINT:20957525 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 242 323 1 1033 337 XLS3_Contig2932 AT3G62630 expressed protein [ AT3G62630 15228815 NP_191822.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:23174913 CHROM_POS_END:23176055 } -=| MIDDLE_POINT:23175484 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.56 50 131 261 1 906 380 XLS3_Contig2933 AT1G68550 AP2 domain-containing transcription factor, putative, contains Pfam profile: PF00847 AP2 domain [ 15221435 NP_177022.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:25729473 CHROM_POS_END:25730447 } -=| MIDDLE_POINT:25729960 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.22 37 68 179 1 857 324 XLS3_Contig2934 AT3G11340 UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase [ 15229731 NP_187742.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3556734 CHROM_POS_END:3558155 } -=| MIDDLE_POINT:3557444 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.55 44 116 259 1 897 447 XLS3_Contig2935 AT4G26910 2-oxoacid dehydrogenase family protein, similar to SP|P36957 Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor (EC 2.3.1.61) {Homo sapiens} [ 18416889 NP_567761.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:13520133 CHROM_POS_END:13522895 } -=| MIDDLE_POINT:13521514 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.53 49 125 252 1 904 464 XLS3_Contig2936 AT2G05920 subtilase family protein, contains similarity to cucumisin-like serine protease GI:3176874 from (Arabidopsis thaliana) [ 18396193 NP_565330.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2269828 CHROM_POS_END:2272204 } -=| MIDDLE_POINT:2271016 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 230 300 1 901 754 XLS3_Contig2937 AT3G17410 serine/threonine protein kinase, putative, similar to Pto kinase interactor 1 GB:AAC61805 from (Lycopersicon esculentum) [ 22331138 NP_188367.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5956607 CHROM_POS_END:5958888 } -=| MIDDLE_POINT:5957747 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 197 259 1 1008 364 XLS3_Contig2938 AT3G12685 expressed protein, contains Pfam domain, PF02681: Uncharacterized BCR, COG1963 [ 18399713 NP_566432.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4029252 CHROM_POS_END:4030268 } -=| MIDDLE_POINT:4029760 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.27 58 56 95 1 817 213 XLS3_Contig2939 AT5G66530 aldose 1-epimerase family protein, similar to apospory-associated protein C [ 15240009 NP_201454.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26571047 CHROM_POS_END:26572801 } -=| MIDDLE_POINT:26571924 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 201 290 1 922 307 XLS3_Contig2940 AT2G44530 ribose-phosphate pyrophosphokinase, putative / phosphoribosyl diphosphate synthetase, putative, very strong similarity to phosphoribosyl pyrophosphate synthase (Spinacia oleracea) GI:4902849 [ 30689743 NP_181981.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18390808 CHROM_POS_END:18393050 } -=| MIDDLE_POINT:18391929 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 89 187 208 1 1042 394 XLS3_Contig2941 AT5G13460 calmodulin-binding family protein, low similarity to SF16 protein (Helianthus annuus) GI:560150 [ 15240633 NP_196850.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4316326 CHROM_POS_END:4318250 } -=| MIDDLE_POINT:4317288 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.67 45 162 353 1 1109 443 XLS3_Contig2942 AT2G33840 tRNA synthetase class I (W and Y) family protein, similar to SP|P54577 Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosyl--tRNA ligase) (TyrRS) {Homo sapiens} [ 30685869 NP_850222.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:14322087 CHROM_POS_END:14324405 } -=| MIDDLE_POINT:14323246 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 222 286 1 888 385 XLS3_Contig2943 AT5G41890 GDSL-motif lipase/hydrolase family protein, similar to family II lipase EXL3 (GI:15054386), EXL1 (GI:15054382), EXL2 (GI:15054384) (Arabidopsis thaliana) [ 15238210 NP_199004.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16781520 CHROM_POS_END:16784128 } -=| MIDDLE_POINT:16782824 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.91 52 155 293 1 928 369 XLS3_Contig2944 AT1G36050 expressed protein [ AT1G36050 30693281 NP_564467.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:13451679 CHROM_POS_END:13454267 } -=| MIDDLE_POINT:13452973 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 173 221 1 897 386 XLS3_Contig2945 AT3G24760 F-box family protein, [ AT3G24760 15230186 NP_189120.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9040115 CHROM_POS_END:9041266 } -=| MIDDLE_POINT:9040690 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.61 50 129 256 1 925 383 XLS3_Contig2946 AT3G26690 MutT/nudix family protein, similar to SP|Q09790 Diadenosine 5',5'''-P1,P6-hexaphosphate hydrolase (EC 3.6.1.-) (Ap6A hydrolase) {Schizosaccharomyces pombe} [ 15231598 NP_189303.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9805655 CHROM_POS_END:9806635 } -=| MIDDLE_POINT:9806145 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.61 64 114 177 1 1144 202 XLS3_Contig2947 AT1G49430 long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase, nearly identical to acyl CoA synthetase (MF45P) GI:1617268 from (Brassica napus) [ 22330132 NP_175368.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18294856 CHROM_POS_END:18299309 } -=| MIDDLE_POINT:18297082 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 60 202 335 1 1193 665 XLS3_Contig2948 AT5G16800 GCN5-related N-acetyltransferase (GNAT) family protein, very low similarity to SP|P39909 Spermine/spermidine acetyltransferase (EC 2.3.1.57) {Bacillus subtilis} [ 42573393 NP_974793.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:5524512 CHROM_POS_END:5526298 } -=| MIDDLE_POINT:5525405 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.8 59 142 239 1 1054 270 XLS3_Contig2949 AT5G06610 expressed protein, contains Pfam profile PF04788: Protein of unknown function (DUF620) [ 15240096 NP_196279.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:2029954 CHROM_POS_END:2033621 } -=| MIDDLE_POINT:2031787 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.83 58 158 272 1 884 368 XLS3_Contig2950 AT1G72990 glycosyl hydrolase family 35 protein, similar to beta-galactosidase GI:2289790 from (Bacillus circulans) [ 18410234 NP_565051.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:27461141 CHROM_POS_END:27465829 } -=| MIDDLE_POINT:27463485 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.94 63 170 268 1 858 697 XLS3_Contig2951 AT1G58080 ATP phosphoribosyl transferase 1 (ATP-PRT1), identical to ATP phosphoribosyl transferase GI:6683617 from (Arabidopsis thaliana) [ 15217837 NP_176105.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21508227 CHROM_POS_END:21511094 } -=| MIDDLE_POINT:21509660 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 68 255 375 1 1229 411 XLS3_Contig2952 AT1G07280 expressed protein [ AT1G07280 42561776 NP_172208.2 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2238504 CHROM_POS_END:2240990 } -=| MIDDLE_POINT:2239747 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.28 42 82 192 1 819 552 XLS3_Contig2953 AT3G23880 F-box family protein, contains F-box domain Pfam:PF00646 [ 15229536 NP_189030.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8622068 CHROM_POS_END:8623162 } -=| MIDDLE_POINT:8622615 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.32 37 98 260 1 945 364 XLS3_Contig2954 AT1G21750 protein disulfide isomerase, putative, similar to SP|P29828 Protein disulfide isomerase precursor (PDI) (EC 5.3.4.1) {Medicago sativa} [ 15219086 NP_173594.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:7645756 CHROM_POS_END:7648503 } -=| MIDDLE_POINT:7647129 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 61 174 281 1 993 501 XLS3_Contig2955 AT1G16560 Per1-like family protein, contains Pfam profile PF04080: Per1-like [ 15219283 NP_173104.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:5668938 CHROM_POS_END:5670336 } -=| MIDDLE_POINT:5669637 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 175 261 1 918 342 XLS3_Contig2956 AT3G57790 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein, weak similarity to SP|P15922 Exo-poly-alpha-D-galacturonosidase precursor (EC 3.2.1.82) (Exo-PG) {Erwinia chrysanthemi} [ 18410809 NP_567055.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21416364 CHROM_POS_END:21418065 } -=| MIDDLE_POINT:21417214 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 295 416 1 1328 490 XLS3_Contig2957 AT1G28560 snRNA activating complex family protein, similar to snRNA activating protein complex 50 kDa subunit (SNAPc 50 kDa subunit) (Proximal sequence element-binding transcription factor beta subunit) (PSE-binding factor beta subunit) (PTF beta subunit) (Swiss-Prot:Q92966) (Homo sapiens) [ 22329836 NP_174178.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:10038183 CHROM_POS_END:10040368 } -=| MIDDLE_POINT:10039275 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.6 42 110 260 1 1410 375 XLS3_Contig2958 AT2G38090 myb family transcription factor, contains Pfam profile: PF00249 myb-like DNA-binding domain [ 30687381 NP_181344.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:15952356 CHROM_POS_END:15953853 } -=| MIDDLE_POINT:15953104 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.7 59 129 217 1 819 298 XLS3_Contig2959 AT5G06130 chaperone protein dnaJ-related, similar to unknown protein (pir||T00468) [ 22326624 NP_196231.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1853755 CHROM_POS_END:1855764 } -=| MIDDLE_POINT:1854759 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.79 63 140 220 1 951 315 XLS3_Contig2960 AT2G33620 DNA-binding family protein / AT-hook protein 1 (AHP1), identical to AT-hook protein 1 (Arabidopsis thaliana) gi|2598227|emb|CAA10857 [ 18403332 NP_565769.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:14241825 CHROM_POS_END:14243639 } -=| MIDDLE_POINT:14242732 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.69 48 159 331 1 1377 351 XLS3_Contig2961 AT5G19680 leucine-rich repeat family protein, contains leucine rich repeat (LRR) domains, Pfam:PF00560 [ 15241153 NP_197469.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6649665 CHROM_POS_END:6651566 } -=| MIDDLE_POINT:6650615 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 186 248 1 953 328 XLS3_Contig2962 AT5G13520 peptidase M1 family protein, similar to SP|P09960 Leukotriene A-4 hydrolase (EC 3.3.2.6) (LTA-4 hydrolase) {Homo sapiens} [ 15240645 NP_196856.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4342120 CHROM_POS_END:4344574 } -=| MIDDLE_POINT:4343347 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 180 275 1 911 616 XLS3_Contig2963 AT1G69210 expressed protein [ AT1G69210 18409217 NP_564954.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26022246 CHROM_POS_END:26023721 } -=| MIDDLE_POINT:26022983 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.42 52 87 165 1 826 305 XLS3_Contig2964 AT3G18490 aspartyl protease family protein, contains Pfam domain, PF00026: eukaryotic aspartyl protease [ 15229656 NP_188478.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6349096 CHROM_POS_END:6350598 } -=| MIDDLE_POINT:6349847 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.93 54 167 306 1 928 500 XLS3_Contig2965 AT5G61670 expressed protein [ AT5G61670 15240312 NP_200975.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:24800855 CHROM_POS_END:24802427 } -=| MIDDLE_POINT:24801641 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 195 264 1 926 307 XLS3_Contig2966 AT5G09850 transcription elongation factor-related, low similarity to SP|P10712 Transcription elongation factor S-II (Transcription elongation factor A) {Mus musculus} [ 18416107 NP_568218.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3063489 CHROM_POS_END:3065222 } -=| MIDDLE_POINT:3064355 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.41 48 89 185 1 891 353 XLS3_Contig2967 AT1G61900 expressed protein, contains similarity to glutamic acid/alanine-rich protein GI:6707830 from (Trypanosoma congolense) [ 30696637 NP_176382.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:22886173 CHROM_POS_END:22888387 } -=| MIDDLE_POINT:22887280 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.58 54 105 193 1 836 433 XLS3_Contig2968 AT2G22240 inositol-3-phosphate synthase isozyme 2 / myo-inositol-1-phosphate synthase 2 / MI-1-P synthase 2 / IPS 2, identical to SP|Q38862 Myo-inositol-1-phosphate synthase isozyme 2 (EC 5.5.1.4) (MI-1-P synthase 2) (IPS 2) {Arabidopsis thaliana} [ 15227169 NP_179812.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9458981 CHROM_POS_END:9461018 } -=| MIDDLE_POINT:9459999 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.49 94 94 99 1 494 510 XLS3_Contig2969 AT2G34980 phosphatidylinositolglycan synthase family protein, similar to SP|Q92535 Phosphatidylinositol-glycan biosynthesis, class C protein (PIG-C) {Homo sapiens} [ 15226871 NP_181043.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:14756046 CHROM_POS_END:14756957 } -=| MIDDLE_POINT:14756501 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 214 305 1 1164 303 XLS3_Contig2970 AT4G19420 pectinacetylesterase family protein, contains Pfam profile: PF03283 pectinacetylesterase [ 22328797 NP_193677.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:10587515 CHROM_POS_END:10589818 } -=| MIDDLE_POINT:10588666 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.78 55 138 249 1 867 397 XLS3_Contig2971 AT4G14200 expressed protein [ AT4G14200 22328620 NP_193156.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:8185519 CHROM_POS_END:8188662 } -=| MIDDLE_POINT:8187090 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.18 40 47 117 1 937 784 XLS3_Contig2972 AT4G22840 bile acid:sodium symporter family protein, low similarity to SP|Q12908 Ileal sodium/bile acid cotransporter {Homo sapiens} [ 18416020 NP_567671.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11991647 CHROM_POS_END:11993687 } -=| MIDDLE_POINT:11992667 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.51 53 109 204 1 806 409 XLS3_Contig2973 no_hits_found 0 0 XLS3_Contig2974 AT3G24160 expressed protein, identical to cDNA putative type 1 membrane protein (PMP)GI:4206764 [ 15230073 NP_189058.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8726248 CHROM_POS_END:8729030 } -=| MIDDLE_POINT:8727639 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.51 38 107 275 1 989 364 XLS3_Contig2975 AT4G34420 expressed protein, [ AT4G34420 22329158 NP_195168.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:16456601 CHROM_POS_END:16460530 } -=| MIDDLE_POINT:16458565 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.41 58 74 127 1 891 491 XLS3_Contig2976 AT1G58100 TCP family transcription factor, putative, similar to auxin-induced basic helix-loop-helix transcription factor GI:5731257 from (Gossypium hirsutum) [ 15217857 NP_176107.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21516345 CHROM_POS_END:21517550 } -=| MIDDLE_POINT:21516947 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.57 53 133 248 1 1883 401 XLS3_Contig2977 AT1G76900 F-box family protein / tubby family protein, similar to Tubby protein (SP:P50586) {Mus musculus} [ 15223772 NP_177816.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:28887635 CHROM_POS_END:28889271 } -=| MIDDLE_POINT:28888453 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.79 67 150 222 1 915 455 XLS3_Contig2978 AT2G25520 phosphate translocator-related, low similarity to SP|P52178 Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor (CTPT) {Brassica oleracea}, phosphoenolpyruvate/phosphate translocator precursor (Mesembryanthemum crystallinum) GI:9295275 [ 15224742 NP_180122.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10868028 CHROM_POS_END:10869071 } -=| MIDDLE_POINT:10868549 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 87 235 269 1 990 347 XLS3_Contig2979 AT2G30490 trans-cinnamate 4-monooxygenase / cinnamic acid 4-hydroxylase (C4H) (CA4H) / cytochrome P450 73 (CYP73) (CYP73A5), identical to SP|P92994| Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic acid 4-hydroxylase) (CA4H) (C4H) (P450C4H) (Cytochrome P450 73). {Arabidopsis thaliana} [ 15224514 NP_180607.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13000938 CHROM_POS_END:13002760 } -=| MIDDLE_POINT:13001849 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 86 224 260 1 838 505 XLS3_Contig2980 AT3G56740 ubiquitin-associated (UBA)/TS-N domain-containing protein, contains Pfam profile PF00627: UBA/TS-N domain [ 15228999 NP_191233.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21026610 CHROM_POS_END:21028862 } -=| MIDDLE_POINT:21027736 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.93 67 167 249 1 955 293 XLS3_Contig2981 AT1G03220 extracellular dermal glycoprotein, putative / EDGP, putative, similar to extracellular dermal glycoprotein EDGP precursor (Daucus carota) GI:285741 [ 15218740 NP_171821.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:787143 CHROM_POS_END:788444 } -=| MIDDLE_POINT:787793 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.78 53 157 296 1 960 433 XLS3_Contig2982 AT4G33070 pyruvate decarboxylase, putative, strong similarity to SP|P51846 Pyruvate decarboxylase isozyme 2 (EC 4.1.1.1) (PDC) {Nicotiana tabacum} [ 15234062 NP_195033.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15952522 CHROM_POS_END:15954679 } -=| MIDDLE_POINT:15953600 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 184 238 1 789 607 XLS3_Contig2983 AT4G36070 calcium-dependent protein kinase family protein / CDPK family protein, contains Pfam domains, PF00069: Protein kinase domain and PF00036: EF hand [ 15234291 NP_195331.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:17056910 CHROM_POS_END:17059598 } -=| MIDDLE_POINT:17058254 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 71 276 386 1 1778 536 XLS3_Contig2984 AT1G15930 40S ribosomal protein S12 (RPS12A), similar to 40S ribosomal protein S12 GI:4263712 from (Arabidopsis thaliana) [ 30684617 NP_849673.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:5471696 CHROM_POS_END:5472735 } -=| MIDDLE_POINT:5472215 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.52 73 99 134 1 636 144 XLS3_Contig2985 AT4G09750 short-chain dehydrogenase/reductase (SDR) family protein, similar to androgen-regulated short-chain dehydrogenase/reductase 1 GI:9622124 from (Homo sapiens) [ 15234031 NP_192713.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6146767 CHROM_POS_END:6148695 } -=| MIDDLE_POINT:6147731 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 209 270 1 1093 322 XLS3_Contig2986 AT3G48460 GDSL-motif lipase/hydrolase family protein, similar to lipase (Arabidopsis thaliana) GI:1145627 [ 15228381 NP_190416.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17960481 CHROM_POS_END:17962067 } -=| MIDDLE_POINT:17961274 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.92 56 172 303 1 959 381 XLS3_Contig2987 AT2G15860 expressed protein, and genefinder [ AT2G15860 22325703 NP_179186.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:6912794 CHROM_POS_END:6916364 } -=| MIDDLE_POINT:6914579 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.87 59 170 287 1 1016 512 XLS3_Contig2988 AT1G60780 clathrin adaptor complexes medium subunit family protein, contains Pfam profile: PF00928 adaptor complexes medium subunit family [ 15219810 NP_176277.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:22372954 CHROM_POS_END:22375550 } -=| MIDDLE_POINT:22374252 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 91 206 226 1 886 428 XLS3_Contig2989 AT1G57770 amine oxidase family, contains similarity to carotenoid isomerase (Lycopersicon esculentum) GI:19550437, phytoene dehydrogenase (PDH1) GI:433144 from (Cercospora nicotianae) [ 22330293 NP_176088.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:21398919 CHROM_POS_END:21401800 } -=| MIDDLE_POINT:21400359 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 259 315 1 1004 574 XLS3_Contig2990 no_hits_found 0 0 XLS3_Contig2991 AT1G79530 glyceraldehyde 3-phosphate dehydrogenase, cytosolic, putative / NAD-dependent glyceraldehyde-3-phosphate dehydrogenase, putative, similar to glyceraldehyde-3-phosphate dehydrogenase (Pinus sylvestris) GI:1100223 [ 15219406 NP_178071.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:29921125 CHROM_POS_END:29923981 } -=| MIDDLE_POINT:29922553 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 222 301 1 1004 422 XLS3_Contig2992 AT2G19520 WD-40 repeat protein (MSI4), contains 6 (4 significant) WD-40 repeats (PF0400) [ 30680701 NP_565456.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:8463088 CHROM_POS_END:8466317 } -=| MIDDLE_POINT:8464702 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 314 412 1 1287 507 XLS3_Contig2993 AT2G39800 delta 1-pyrroline-5-carboxylate synthetase A / P5CS A (P5CS1), identical to SP:P54887:P5C1_ARATH [ 15225571 NP_181510.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:16605594 CHROM_POS_END:16610017 } -=| MIDDLE_POINT:16607805 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 203 263 1 913 717 XLS3_Contig2994 AT2G41490 UDP-GlcNAc:dolichol phosphate N-acetylglucosamine-1-phosphate transferase, identical to GI:5804772 [ 18405716 NP_565950.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17308840 CHROM_POS_END:17311108 } -=| MIDDLE_POINT:17309974 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.99 68 181 266 1 833 431 XLS3_Contig2995 AT5G67550 expressed protein, similar to expressed protein [Arabidopsis thaliana] (TAIR:At2g25270.1) [ 79548309 NP_201556.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26964134 CHROM_POS_END:26966338 } -=| MIDDLE_POINT:26965236 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.53 40 69 172 1 1377 509 XLS3_Contig2996 AT5G07590 WD-40 repeat protein family, contains 3 WD-40 repeats (PF00400) [ 42567726 NP_196376.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2401713 CHROM_POS_END:2403732 } -=| MIDDLE_POINT:2402722 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 86 194 223 1 943 458 XLS3_Contig2997 AT1G51450 SPla/RYanodine receptor (SPRY) domain-containing protein, low similarity to DEAD box protein DDX1 (Gallus gallus) GI:16323037, ryanodine receptor (Caenorhabditis elegans) GI:1871447 [ 15223851 NP_175556.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19078067 CHROM_POS_END:19079888 } -=| MIDDLE_POINT:19078977 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.48 39 128 326 1 995 509 XLS3_Contig2998 AT1G67750 pectate lyase family protein, similar to pectate lyase GI:14289169 from (Salix gilgiana) [ 18408851 NP_564906.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:25405323 CHROM_POS_END:25406828 } -=| MIDDLE_POINT:25406075 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 318 413 1 1260 408 XLS3_Contig2999 AT5G05580 omega-3 fatty acid desaturase, chloroplast, temperature-sensitive (FAD8), identical to SP:48622 Temperature-sensitive omega-3 fatty acid desaturase, chloroplast precursor (EC 1.14.19.-) {Arabidopsis thaliana} [ 15239175 NP_196177.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1664332 CHROM_POS_END:1666346 } -=| MIDDLE_POINT:1665339 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 62 178 284 1 963 435 XLS3_Contig3000 AT5G56180 actin-related protein, putative (ARP8), strong similarity to actin-related protein 8A (ARP8) (Arabidopsis thaliana) GI:21427473 [ 30696705 NP_568836.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:22754765 CHROM_POS_END:22758212 } -=| MIDDLE_POINT:22756488 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 58 181 311 1 1060 471 XLS3_Contig3001 AT2G03120 signal peptide peptidase family protein, contains Pfam domain PF04258: Membrane protein of unknown function (DUF435) [ 18395487 NP_565294.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:937551 CHROM_POS_END:940080 } -=| MIDDLE_POINT:938815 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 86 189 218 1 884 344 XLS3_Contig3002 AT3G56200 amino acid transporter family protein, low similarity to N system amino acids transporter NAT-1 (Mus musculus) GI:7406950 [ 15228851 NP_191179.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20861066 CHROM_POS_END:20862758 } -=| MIDDLE_POINT:20861912 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.67 53 131 246 1 949 435 XLS3_Contig3003 AT2G03200 aspartyl protease family protein, contains Pfam domain, PF00026: eukaryotic aspartyl protease [ 30678047 NP_565298.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:966503 CHROM_POS_END:967888 } -=| MIDDLE_POINT:967195 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.27 31 93 298 1 891 461 XLS3_Contig3004 AT5G26740 expressed protein, contains Pfam profile PF03619: Domain of unknown function [ 30690265 NP_850871.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:9292439 CHROM_POS_END:9294410 } -=| MIDDLE_POINT:9293424 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 254 308 1 1227 422 XLS3_Contig3005 AT5G49630 amino acid permease 6 (AAP6), identical to amino acid permease 6 (AAP6) (Arabidopsis thaliana) GI:1769887 [ 15240523 NP_199774.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20159907 CHROM_POS_END:20163667 } -=| MIDDLE_POINT:20161787 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.59 52 118 225 1 753 481 XLS3_Contig3006 AT5G64200 arginine/serine-rich splicing factor SC35, contains similarity to splicing factor [ 30697964 NP_851261.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:25699075 CHROM_POS_END:25700779 } -=| MIDDLE_POINT:25699927 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.78 57 179 310 1 913 303 XLS3_Contig3007 AT2G45510 cytochrome P450, putative [ AT2G45510 15225499 NP_182075.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18760159 CHROM_POS_END:18762018 } -=| MIDDLE_POINT:18761088 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.62 51 122 237 1 875 511 XLS3_Contig3008 AT5G13800 hydrolase, alpha/beta fold family protein, low similarity to hydrolase (Terrabacter sp. DBF63) GI:14196240 [ 30684593 NP_850815.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4452066 CHROM_POS_END:4454144 } -=| MIDDLE_POINT:4453105 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.7 57 124 214 1 888 484 XLS3_Contig3009 AT2G44480 glycosyl hydrolase family 1 protein, contains Pfam PF00232 : Glycosyl hydrolase family 1 domain [ 15224882 NP_181976.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18366856 CHROM_POS_END:18370077 } -=| MIDDLE_POINT:18368466 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.73 42 101 237 1 1077 517 XLS3_Contig3010 AT2G01940 similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:At1g68130.1) [ 79316450 NP_001030949.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:432651 CHROM_POS_END:434916 } -=| MIDDLE_POINT:433783 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.86 67 163 242 1 909 446 XLS3_Contig3011 no_hits_found 0 0 XLS3_Contig3012 AT4G21660 proline-rich spliceosome-associated (PSP) family protein, similar to SP|Q13435 Splicing factor 3B subunit 2 (Spliceosome associated protein 145) (SAP 145) (SF3b150) (Pre-mRNA splicing factor SF3b 145 kDa subunit) {Homo sapiens} [ 30685521 NP_193897.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11506271 CHROM_POS_END:11509784 } -=| MIDDLE_POINT:11508027 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 236 335 1 1082 584 XLS3_Contig3013 AT1G05030 hexose transporter, putative, similar to hexose transporters from Nicotiana tabacum (GI:8347244), Solanum tuberosum (GI:8347246), Arabidopsis thaliana (GI:8347250) [ 42561706 NP_171996.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1438323 CHROM_POS_END:1441384 } -=| MIDDLE_POINT:1439853 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.63 67 127 187 1 981 524 XLS3_Contig3014 AT5G14310 expressed protein, low similarity to PrMC3 (Pinus radiata) GI:5487873 [ 18417344 NP_568298.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:4615595 CHROM_POS_END:4617425 } -=| MIDDLE_POINT:4616510 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.76 52 147 278 1 948 446 XLS3_Contig3015 AT5G58330 malate dehydrogenase (NADP), chloroplast, putative, strong similiarity to chloroplast NADP-dependent malate dehydrogenase (EC 1.1.1.82) SP|O48902 {Medicago sativa}, SP|P21528 {Pisum sativum}, SP|Q05145 {Mesembryanthemum crystallinum}, SP|P46489 {Flaveria bidentis}, (Flaveria trinervia) GI:726334, SP|P17606I {Sorghum bicolor} [ 30697049 NP_851214.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:23597236 CHROM_POS_END:23599513 } -=| MIDDLE_POINT:23598374 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 221 297 1 947 443 XLS3_Contig3016 AT3G13870 root hair defective 3 (RHD3), identical to root hair defective 3 (RHD3) GI:1839188 from (Arabidopsis thaliana) (Genes Dev (1997) 11(6), 799-811) [ 15231390 NP_188003.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4565769 CHROM_POS_END:4571116 } -=| MIDDLE_POINT:4568442 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 89 223 249 1 844 802 XLS3_Contig3017 AT2G37770 similar to aldo/keto reductase family protein [Arabidopsis thaliana] (TAIR:At3g53880.1) [ 79324628 NP_001031505.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:15841966 CHROM_POS_END:15843737 } -=| MIDDLE_POINT:15842851 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 78 214 271 1 946 315 XLS3_Contig3018 AT2G39980 transferase family protein, contains Pfam profile PF02458 transferase family [ 15225603 NP_181527.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16695515 CHROM_POS_END:16696963 } -=| MIDDLE_POINT:16696239 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.87 63 164 260 1 872 482 XLS3_Contig3019 AT1G50940 electron transfer flavoprotein alpha subunit family protein, contains Pfam profile: PF00766 electron transfer flavoprotein, alpha subunit [ 15223680 NP_175507.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18881706 CHROM_POS_END:18883607 } -=| MIDDLE_POINT:18882656 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 64 205 320 1 989 363 XLS3_Contig3020 no_hits_found 0 0 XLS3_Contig3021 AT3G18140 transducin family protein / WD-40 repeat family protein, contains 6 WD-40 repeats (PF00400) [ 15229590 NP_188442.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:6212749 CHROM_POS_END:6214573 } -=| MIDDLE_POINT:6213661 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 87 242 277 1 1163 305 XLS3_Contig3022 AT4G17370 oxidoreductase family protein, weak similarity to SP|P26935 Myo-inositol 2-dehydrogenase (EC 1.1.1.18). {Bacillus subtilis} [ 42566900 NP_193468.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9706200 CHROM_POS_END:9708154 } -=| MIDDLE_POINT:9707177 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.93 72 122 168 1 993 368 XLS3_Contig3023 AT1G27340 F-box family protein, contains Pfam PF00646: F-box domain [ 18396298 NP_564278.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:9495728 CHROM_POS_END:9497844 } -=| MIDDLE_POINT:9496786 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.66 54 127 233 1 873 467 XLS3_Contig3024 AT5G07920 diacylglycerol kinase 1 (DGK1), identical to diacylglycerol kinase 1 (Diglyceride kinase 1, DGK 1, DAG kinase 1) (Arabidopsis thaliana) SWISS-PROT:Q39017 [ 15241456 NP_196409.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2525198 CHROM_POS_END:2528397 } -=| MIDDLE_POINT:2526797 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.47 60 87 145 1 934 728 XLS3_Contig3025 no_hits_found 0 0 XLS3_Contig3026 AT3G06350 dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative, similar to dehydroquinate dehydratase/shikimate dehydrogenase (Nicotiana tabacum)(GI:535771), dehydroquinate dehydratase/shikimate:NADP oxidoreductase (Lycopersicon esculentum)(GI:3169883) [ 15230703 NP_187286.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1924542 CHROM_POS_END:1927707 } -=| MIDDLE_POINT:1926124 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.73 47 135 287 1 940 603 XLS3_Contig3027 AT1G64280 regulatory protein (NPR1), identical to regulatory protein NPR1 (nonexpresser of PR genes 1, NPR1 [ 15222657 NP_176610.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:23856992 CHROM_POS_END:23859070 } -=| MIDDLE_POINT:23858031 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 51 228 446 1 1477 593 XLS3_Contig3028 AT1G43860 expressed protein [ AT1G43860 18401084 NP_564488.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16624684 CHROM_POS_END:16626825 } -=| MIDDLE_POINT:16625754 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 75 213 283 1 922 370 XLS3_Contig3029 no_hits_found 0 0 XLS3_Contig3030 no_hits_found 0 0 XLS3_Contig3031 AT3G57990 expressed protein [ AT3G57990 15230911 NP_191358.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:21481221 CHROM_POS_END:21482324 } -=| MIDDLE_POINT:21481772 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.28 33 88 261 1 927 367 XLS3_Contig3032 AT4G33680 aminotransferase class I and II family protein, low similarity to Aromatic Aminotransferase from Pyrococcus horikoshii GP|14278621 [ 18418270 NP_567934.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16171850 CHROM_POS_END:16174633 } -=| MIDDLE_POINT:16173241 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 206 282 1 963 461 XLS3_Contig3033 AT5G08160 serine/threonine protein kinase, putative, identical to serine/threonine protein kinase (Arabidopsis thaliana) gi|2109293|gb|AAB69123 [ 15241535 NP_196433.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2625904 CHROM_POS_END:2627943 } -=| MIDDLE_POINT:2626923 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.87 76 156 204 1 923 347 XLS3_Contig3034 AT1G06110 F-box family protein, contains similarity to F-box protein FBX3 GI:6103643 from (Homo sapiens) [ 18390613 NP_563759.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:1853236 CHROM_POS_END:1854937 } -=| MIDDLE_POINT:1854086 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.85 53 156 289 1 944 436 XLS3_Contig3035 AT4G23560 glycosyl hydrolase family 9 protein, similar to cellulase GI:1039431 from (Phaseolus vulgaris) [ 15236526 NP_194087.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12293643 CHROM_POS_END:12295798 } -=| MIDDLE_POINT:12294720 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.9 64 163 251 1 864 479 XLS3_Contig3036 AT1G22340 UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase [ 15219867 NP_173652.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7890453 CHROM_POS_END:7892079 } -=| MIDDLE_POINT:7891266 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.59 40 116 285 1 891 487 XLS3_Contig3037 AT1G74530 expressed protein [ AT1G74530 79321279 NP_001031281.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:28013384 CHROM_POS_END:28015705 } -=| MIDDLE_POINT:28014544 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.9 57 172 300 1 930 314 XLS3_Contig3038 AT2G38060 transporter-related, low similarity to vesicular glutamate transporter 3 (Homo sapiens) GI:21213895, brain specific Na+-dependent inorganic phosphate cotransporter (Rattus norvegicus) GI:507415 [ 42569720 NP_181341.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15929805 CHROM_POS_END:15932701 } -=| MIDDLE_POINT:15931253 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 194 293 1 1043 512 XLS3_Contig3039 AT4G02340 epoxide hydrolase, putative, similar to epoxide hydrolases from Glycine max GI:2764806, Solanum tuberosum GI:407938 [ 18411917 NP_567228.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1035722 CHROM_POS_END:1037403 } -=| MIDDLE_POINT:1036562 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 58 167 285 1 917 324 XLS3_Contig3040 AT1G26640 aspartate/glutamate/uridylate kinase family protein, contains Pfam amino acid kinase family PF00696 [ 22329798 NP_173986.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9207607 CHROM_POS_END:9209753 } -=| MIDDLE_POINT:9208680 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.85 66 153 229 1 846 332 XLS3_Contig3041 AT5G40610 glycerol-3-phosphate dehydrogenase (NAD+) / GPDH, strong similarity to SP|P52425 Glycerol-3-phosphate dehydrogenase (NAD+) (EC 1.1.1.8) {Cuphea lanceolata} [ 15237458 NP_198877.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16282299 CHROM_POS_END:16284486 } -=| MIDDLE_POINT:16283392 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 223 289 1 939 400 XLS3_Contig3042 AT4G29160 SNF7 family protein, contains Pfam domain, PF03357: SNF7 family [ 15233464 NP_194645.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:14381025 CHROM_POS_END:14382348 } -=| MIDDLE_POINT:14381686 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.15 73 28 38 1 828 219 XLS3_Contig3043 AT1G69780 homeobox-leucine zipper protein 13 (HB-13) / HD-ZIP transcription factor 13, identical to homeobox gene 13 protein (GP:12325190) (Arabidopsis thaliana) [ 15222452 NP_177136.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:26262829 CHROM_POS_END:26264128 } -=| MIDDLE_POINT:26263478 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.12 86 25 29 1 909 294 XLS3_Contig3044 AT4G13430 aconitase family protein / aconitate hydratase family protein, contains Pfam profile PF00330: Aconitase family (aconitate hydratase [ 18414006 NP_567405.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7804190 CHROM_POS_END:7807785 } -=| MIDDLE_POINT:7805987 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 241 317 1 1031 509 XLS3_Contig3045 AT1G03220 extracellular dermal glycoprotein, putative / EDGP, putative, similar to extracellular dermal glycoprotein EDGP precursor (Daucus carota) GI:285741 [ 15218740 NP_171821.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:787143 CHROM_POS_END:788444 } -=| MIDDLE_POINT:787793 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.39 38 108 284 1 886 433 XLS3_Contig3046 AT5G65780 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5), nearly identical to SP|Q9FYA6 Branched-chain amino acid aminotransferase 5, chloroplast precursor (EC 2.6.1.42) (Atbcat-5) {Arabidopsis thaliana} [ 42568800 NP_201379.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:26333644 CHROM_POS_END:26335811 } -=| MIDDLE_POINT:26334727 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 192 252 1 980 415 XLS3_Contig3047 AT1G78420 expressed protein [ AT1G78420 18411948 NP_565180.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:29510171 CHROM_POS_END:29512165 } -=| MIDDLE_POINT:29511168 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.72 80 115 142 1 976 401 XLS3_Contig3048 AT2G47490 mitochondrial substrate carrier family protein, contains Pfam profile: PF00153 mitochondrial carrier protein [ 18407372 NP_566102.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19494619 CHROM_POS_END:19496381 } -=| MIDDLE_POINT:19495500 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.77 71 138 192 1 928 312 XLS3_Contig3049 AT1G02860 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related, weak similarity to tripartite motif protein TRIM13 (Mus musculus) GI:12407427, gpStaf50 (Homo sapiens) GI:899300 [ 18379022 NP_563667.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:635474 CHROM_POS_END:637083 } -=| MIDDLE_POINT:636278 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.74 61 142 231 1 867 335 XLS3_Contig3050 AT2G14910 expressed protein [ AT2G14910 15226027 NP_179097.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:6414039 CHROM_POS_END:6416097 } -=| MIDDLE_POINT:6415068 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.92 60 186 305 1 1236 386 XLS3_Contig3051 AT5G17330 glutamate decarboxylase 1 (GAD 1), sp|Q42521 [ AT5G17330 15237949 NP_197235.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5711143 CHROM_POS_END:5714841 } -=| MIDDLE_POINT:5712992 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 90 331 366 1 1190 502 XLS3_Contig3052 AT4G33110 coclaurine N-methyltransferase, putative, similar to coclaurine N-methyltransferase (Coptis japonica) GI:16754879 [ 18418151 NP_567912.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15972500 CHROM_POS_END:15974534 } -=| MIDDLE_POINT:15973517 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 67 140 207 1 951 355 XLS3_Contig3053 AT1G74270 60S ribosomal protein L35a (RPL35aC), similar to ribosomal protein L33B GB:NP_014877 from (Saccharomyces cerevisiae) [ 15221191 NP_177567.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:27932076 CHROM_POS_END:27933127 } -=| MIDDLE_POINT:27932601 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.31 75 57 76 1 890 112 XLS3_Contig3054 AT3G44680 histone deacetylase, putative, similar to histone deacetylase-1 (HD-1) (Gallus gallus) GI:2791684 [ 30692236 NP_190054.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:16237756 CHROM_POS_END:16240739 } -=| MIDDLE_POINT:16239247 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 85 364 424 1 1596 426 XLS3_Contig3055 AT5G62770 expressed protein [ AT5G62770 15241966 NP_201083.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:25227790 CHROM_POS_END:25228596 } -=| MIDDLE_POINT:25228193 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.23 34 86 249 1 884 268 XLS3_Contig3056 AT5G14850 mannosyltransferase, putative, similar to PIGB from Homo sapiens (gi:1552169), Mus musculus (gi:7634741) [ 18417492 NP_568305.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:4802102 CHROM_POS_END:4804980 } -=| MIDDLE_POINT:4803541 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 63 110 174 1 1084 548 XLS3_Contig3057 AT1G54840 expressed protein [ AT1G54840 30695841 NP_175881.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:20456468 CHROM_POS_END:20457599 } -=| MIDDLE_POINT:20457033 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.27 41 65 156 1 889 349 XLS3_Contig3058 no_hits_found 0 0 XLS3_Contig3059 AT2G28110 exostosin family protein, contains 1 transmembrane domain [ 42570324 NP_850113.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11985101 CHROM_POS_END:11986718 } -=| MIDDLE_POINT:11985909 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.66 54 118 217 1 949 448 XLS3_Contig3060 AT3G49290 expressed protein [ AT3G49290 15229112 NP_190498.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:18284392 CHROM_POS_END:18286206 } -=| MIDDLE_POINT:18285299 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.47 44 112 251 1 907 312 XLS3_Contig3061 AT1G58110 bZIP family transcription factor, similar to bZIP transcriptional activator RSG GI:8777512 from (Nicotiana tabacum) [ 42562802 NP_176108.3 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:21519584 CHROM_POS_END:21521039 } -=| MIDDLE_POINT:21520311 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.35 39 96 245 1 862 374 XLS3_Contig3062 AT5G57140 calcineurin-like phosphoesterase family protein, contains Pfam profile: PF00149 Calcineurin-like phosphoesterase [ 15242042 NP_200524.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:23167152 CHROM_POS_END:23168596 } -=| MIDDLE_POINT:23167874 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.78 68 127 185 1 858 397 XLS3_Contig3063 AT3G02090 mitochondrial processing peptidase beta subunit, putative, similar to mitochondrial processing peptidase beta subunit, mitochondrial precursor, Beta-MPP (Human) SWISS-PROT:O75439 [ 30678485 NP_850500.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:365631 CHROM_POS_END:368541 } -=| MIDDLE_POINT:367086 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.91 66 168 251 1 878 535 XLS3_Contig3064 AT1G08820 vesicle-associated membrane family protein / VAMP family protein, similar to VAP27 GI:6688926 (Nicotiana plumbaginifolia) [ 30680831 NP_172359.2 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:2821813 CHROM_POS_END:2824415 } -=| MIDDLE_POINT:2823114 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.42 52 82 155 1 1113 386 XLS3_Contig3065 AT5G18520 expressed protein [ AT5G18520 15238858 NP_197353.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6145029 CHROM_POS_END:6146351 } -=| MIDDLE_POINT:6145690 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.62 48 147 302 1 996 440 XLS3_Contig3066 AT4G01690 protoporphyrinogen oxidase (PPOX), identical to SP|P55826 [ 15234278 NP_192078.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:729929 CHROM_POS_END:732309 } -=| MIDDLE_POINT:731119 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 192 248 1 924 537 XLS3_Contig3067 AT3G15355 ubiquitin-conjugating enzyme-related, similar to ubiquitin-conjugating enzyme (GI:3319990) (Mus musculus) [ 15229481 NP_188154.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5183865 CHROM_POS_END:5186676 } -=| MIDDLE_POINT:5185270 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.11 80 21 26 1 1006 609 XLS3_Contig3068 no_hits_found 0 0 XLS3_Contig3069 AT3G59890 dihydrodipicolinate reductase family protein, weak similarity to SP|Q52419 Dihydrodipicolinate reductase (EC 1.3.1.26) (DHPR) {Pseudomonas syringae} [ 18411368 NP_567088.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:22135474 CHROM_POS_END:22137468 } -=| MIDDLE_POINT:22136471 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.47 59 96 161 1 874 349 XLS3_Contig3070 AT5G16150 hexose transporter, putative, strong similarity to hexose transporter (Arabidopsis thaliana) GI:8347250 [ 18417892 NP_568328.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:5272907 CHROM_POS_END:5275681 } -=| MIDDLE_POINT:5274294 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.97 85 181 212 1 944 546 XLS3_Contig3071 AT1G54340 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative, strong similarity to NADP-isocitrate dehydrogenase GI:5764653 from (Citrus limon) [ 15221788 NP_175836.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:20287187 CHROM_POS_END:20290173 } -=| MIDDLE_POINT:20288680 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 228 277 1 898 416 XLS3_Contig3072 AT5G60740 ABC transporter family protein, similar to ATP-binding cassette, sub-family G, member 2 (Placenta-specific ATP- binding cassette transporter) (Breast cancer resistance protein) SP:Q9UNQ0 from (Homo sapiens) [ 15239420 NP_200882.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:24443298 CHROM_POS_END:24447495 } -=| MIDDLE_POINT:24445396 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.83 53 136 253 1 1061 1061 XLS3_Contig3073 AT2G28480 expressed protein, contains Pfam profile PF01985: Uncharacterised protein family [ 15226402 NP_180415.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:12183719 CHROM_POS_END:12185108 } -=| MIDDLE_POINT:12184413 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.88 66 157 235 1 909 372 XLS3_Contig3074 AT5G67630 DNA helicase, putative, similar to RuvB-like DNA helicase reptin (Danio rerio) GI:27733814, reptin (Drosophila melanogaster) GI:7243682 [ 15240788 NP_201564.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26984761 CHROM_POS_END:26986532 } -=| MIDDLE_POINT:26985646 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 87 217 248 1 937 469 XLS3_Contig3075 AT1G29320 transducin family protein / WD-40 repeat family protein, contains 3 WD-40 repeats (PF00400) [ 15218889 NP_174226.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:10255341 CHROM_POS_END:10258224 } -=| MIDDLE_POINT:10256782 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.71 57 133 232 1 836 468 XLS3_Contig3076 AT5G48900 pectate lyase family protein, similar to pectate lyase GP:14531296 from (Fragaria x ananassa) [ 18422969 NP_568705.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19842466 CHROM_POS_END:19846135 } -=| MIDDLE_POINT:19844300 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 87 263 300 1 1195 417 XLS3_Contig3077 AT4G31340 myosin heavy chain-related, contains weak similarity to Myosin heavy chain, nonmuscle type A (Cellular myosin heavy chain, type A) (Nonmuscle myosin heavy chain-A) (NMMHC-A) (Swiss-Prot:P35579) (Homo sapiens) [ 18417787 NP_567873.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:15205668 CHROM_POS_END:15208956 } -=| MIDDLE_POINT:15207312 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.64 48 130 268 1 958 437 XLS3_Contig3078 no_hits_found 0 0 XLS3_Contig3079 AT1G74110 cytochrome P450 family protein, similar to Cytochrome P450 78A4 (SP:O65012) Cytochrome P450 78A4 (Pinus radiata) [ 15221132 NP_177551.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:27870328 CHROM_POS_END:27872029 } -=| MIDDLE_POINT:27871178 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 53 281 524 1 1712 537 XLS3_Contig3080 AT3G20790 oxidoreductase family protein, weak similarity to SP|Q07982 Glucose--fructose oxidoreductase precursor (EC 1.1.99.28) {Zymomonas mobilis} [ 22331222 NP_188715.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7268808 CHROM_POS_END:7271105 } -=| MIDDLE_POINT:7269956 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 74 206 276 1 959 355 XLS3_Contig3081 AT4G11640 serine racemase, putative, similar to serine racemase (Mus musculus) GI:6448865 [ 15234252 NP_192901.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:7021764 CHROM_POS_END:7023246 } -=| MIDDLE_POINT:7022505 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.95 69 172 246 1 865 346 XLS3_Contig3082 no_hits_found 0 0 XLS3_Contig3083 AT5G20070 MutT/nudix family protein, low similarity to SP|Q19427 NADH pyrophosphatase (EC 3.6.1.-) {Caenorhabditis elegans} [ 15241252 NP_197507.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:6779895 CHROM_POS_END:6782310 } -=| MIDDLE_POINT:6781102 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.69 54 135 247 1 736 438 XLS3_Contig3084 AT1G55880 pyridoxal-5'-phosphate-dependent enzyme, beta family protein, similar to SP|P50867 Cysteine synthase (EC 4.2.99.8) (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (Aspergillus nidulans) {Emericella nidulans} [ 15222794 NP_175984.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:20902957 CHROM_POS_END:20904805 } -=| MIDDLE_POINT:20903881 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.86 70 150 214 1 939 421 XLS3_Contig3085 AT5G05930 guanylyl cyclase-related (GC1), similar to guanylyl cyclase (GC1) GI:21436486 from (Arabidopsis thaliana) [ 18415044 NP_568159.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1780271 CHROM_POS_END:1782660 } -=| MIDDLE_POINT:1781465 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.57 49 112 227 1 922 274 XLS3_Contig3086 AT5G47780 glycosyl transferase family 8 protein, contains Pfam profile: PF01501 glycosyl transferase family 8 [ 18422837 NP_568688.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19365217 CHROM_POS_END:19367743 } -=| MIDDLE_POINT:19366480 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.18 31 64 205 1 898 616 XLS3_Contig3087 AT4G27650 pelota (PEL1), identical to pelota (Arabidopsis thaliana) GI:3941543 [ 30687676 NP_194495.3 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13803465 CHROM_POS_END:13807562 } -=| MIDDLE_POINT:13805513 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 76 225 295 1 904 378 XLS3_Contig3088 AT5G67290 FAD-dependent oxidoreductase family protein, contains Pfam profile PF01266: FAD dependent oxidoreductase [ 15240268 NP_201530.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:26865645 CHROM_POS_END:26866981 } -=| MIDDLE_POINT:26866313 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 66 190 285 1 908 406 XLS3_Contig3089 AT5G08530 NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial, putative, similar to NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) from {Homo sapiens} SP|P49821, {Bos taurus} SP|P25708, {Aspergillus niger} SP|Q92406 [ 15242306 NP_196470.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2759849 CHROM_POS_END:2761727 } -=| MIDDLE_POINT:2760788 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 89 260 290 1 986 486 XLS3_Contig3090 AT5G16520 expressed protein [ AT5G16520 30685896 NP_197156.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:5394743 CHROM_POS_END:5397374 } -=| MIDDLE_POINT:5396058 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.85 60 150 248 1 877 608 XLS3_Contig3091 AT4G31590 glycosyl transferase family 2 protein, similar to cellulose synthase from Agrobacterium tumeficiens (gi:710492) and Agrobacterium radiobacter (gi:710493) [ 15236004 NP_194887.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15309895 CHROM_POS_END:15312342 } -=| MIDDLE_POINT:15311118 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 82 391 472 1 1416 692 XLS3_Contig3092 AT4G01370 mitogen-activated protein kinase, putative / MAPK, putative (MPK4), identical to mitogen-activated protein kinase homolog (AtMPK4)(Arabidopsis thaliana) SWISS-PROT:Q39024 [ 15234152 NP_192046.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:567219 CHROM_POS_END:568889 } -=| MIDDLE_POINT:568054 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 88 242 273 1 936 376 XLS3_Contig3093 AT2G47010 expressed protein [ AT2G47010 18407231 NP_566093.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:19324574 CHROM_POS_END:19326108 } -=| MIDDLE_POINT:19325341 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.68 56 138 246 1 918 451 XLS3_Contig3094 AT4G07990 DNAJ heat shock N-terminal domain-containing protein, similar to SP|Q9QYI5 DnaJ homolog subfamily B member 10 Mus musculus [ 18413065 NP_567329.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:4825647 CHROM_POS_END:4829605 } -=| MIDDLE_POINT:4827626 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.44 51 92 180 1 837 347 XLS3_Contig3095 AT1G09800 tRNA pseudouridine synthase family protein, contains Pfam profile PF01416: tRNA pseudouridine synthase [ 42561874 NP_172451.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:3177123 CHROM_POS_END:3180338 } -=| MIDDLE_POINT:3178730 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.81 68 112 163 1 827 372 XLS3_Contig3096 AT2G21120 expressed protein [ AT2G21120 30681265 NP_179708.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9059184 CHROM_POS_END:9061347 } -=| MIDDLE_POINT:9060265 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.74 80 138 172 1 880 328 XLS3_Contig3097 AT3G61490 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein, weak similarity to SP|P27644 Polygalacturonase (EC 3.2.1.15) (Pectinase) {Agrobacterium tumefaciens} [ 15233124 NP_191708.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:22769414 CHROM_POS_END:22771112 } -=| MIDDLE_POINT:22770263 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 72 332 461 1 1447 476 XLS3_Contig3098 AT4G19160 expressed protein [ AT4G19160 42572951 NP_974572.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:10477783 CHROM_POS_END:10479958 } -=| MIDDLE_POINT:10478870 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.67 57 129 226 1 1322 453 XLS3_Contig3099 AT2G25280 expressed protein [ AT2G25280 18400785 NP_565590.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:10769718 CHROM_POS_END:10771710 } -=| MIDDLE_POINT:10770714 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 195 246 1 802 291 XLS3_Contig3100 AT1G28400 expressed protein, similar to E6 (GI:1000090) (Gossypium barbadense) [ 15218653 NP_174162.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9972718 CHROM_POS_END:9973725 } -=| MIDDLE_POINT:9973221 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.2 27 86 308 1 956 335 XLS3_Contig3101 AT1G70830 Bet v I allergen family protein, similar to Csf-2 (Cucumis sativus)(GI:5762258)(J Am Soc Hortic Sci 124, 136-139 (1999)) [ 30698751 NP_849875.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:26713865 CHROM_POS_END:26715057 } -=| MIDDLE_POINT:26714461 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.48 38 92 237 1 763 335 XLS3_Contig3102 AT3G17430 phosphate translocator-related, low similarity to phosphoenolpyruvate/phosphate translocator precursor (Mesembryanthemum crystallinum) GI:9295275, SP|P52178 Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor (CTPT) {Brassica oleracea} [ 18401506 NP_566577.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5966603 CHROM_POS_END:5968968 } -=| MIDDLE_POINT:5967785 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.98 90 165 183 1 950 375 XLS3_Contig3103 AT4G26750 hydroxyproline-rich glycoprotein family protein [ AT4G26750 15236849 NP_194405.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:13475854 CHROM_POS_END:13478388 } -=| MIDDLE_POINT:13477121 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.83 58 172 292 1 893 421 XLS3_Contig3104 AT5G09810 actin 7 (ACT7) / actin 2, identical to SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana} [ 15242516 NP_196543.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:3052810 CHROM_POS_END:3054221 } -=| MIDDLE_POINT:3053515 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 84 242 288 1 989 377 XLS3_Contig3105 AT3G21190 expressed protein, contains Pfam PF03138: Plant protein family. The function of this family of plant proteins is unknown [ 18402919 NP_566677.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7432585 CHROM_POS_END:7434549 } -=| MIDDLE_POINT:7433567 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.81 43 163 377 1 1204 422 XLS3_Contig3106 AT5G11860 NLI interacting factor (NIF) family protein, contains Pfam profile PF03031: NLI interacting factor [ 15239800 NP_196747.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:3822025 CHROM_POS_END:3823396 } -=| MIDDLE_POINT:3822710 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.11 44 41 92 1 1001 305 XLS3_Contig3107 AT4G31750 protein phosphatase 2C, putative / PP2C, putative, protein phosphatase 2C, Medicago sativa, PID:g2582800 [ 30689144 NP_194903.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:15364663 CHROM_POS_END:15367213 } -=| MIDDLE_POINT:15365938 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 80 203 251 1 1047 311 XLS3_Contig3108 AT5G46180 ornithine aminotransferase, putative / ornithine--oxo-acid aminotransferase, putative, similar to SP|Q92413 Ornithine aminotransferase (EC 2.6.1.13) (Ornithine--oxo-acid aminotransferase) (Aspergillus nidulans) {Emericella nidulans} [ 15237392 NP_199430.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:18735993 CHROM_POS_END:18738498 } -=| MIDDLE_POINT:18737245 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 73 327 446 1 1675 475 XLS3_Contig3109 AT5G04460 expressed protein [ AT5G04460 30680527 NP_196066.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1260010 CHROM_POS_END:1263696 } -=| MIDDLE_POINT:1261853 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.2 39 43 109 1 1558 863 XLS3_Contig3110 AT4G36250 aldehyde dehydrogenase family protein, contais aldehyde dehydrogenase (NADP) family protein domain, Pfam:PF00171 [ 42567452 NP_195348.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:17151032 CHROM_POS_END:17153384 } -=| MIDDLE_POINT:17152208 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.88 52 153 293 1 938 484 XLS3_Contig3111 AT2G22795 expressed protein [ AT2G22795 30681829 NP_850032.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:9704460 CHROM_POS_END:9706664 } -=| MIDDLE_POINT:9705562 |=| CHROM_ID:2 |=| [( Arabidopsis_thaliana )] |=- 0.11 21 100 466 1 1409 734 XLS3_Contig3112 AT1G30970 zinc finger (C2H2 type) family protein, contains Pfam domain PF00096: Zinc finger, C2H2 type [ 18397747 NP_564369.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:11040594 CHROM_POS_END:11043574 } -=| MIDDLE_POINT:11042084 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.67 55 140 251 1 915 367 XLS3_Contig3113 AT5G40780 lysine and histidine specific transporter, putative, strong similarity to lysine and histidine specific transporter GI:2576361 from (Arabidopsis thaliana) [ 30693663 NP_851109.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:16341051 CHROM_POS_END:16344310 } -=| MIDDLE_POINT:16342680 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 83 204 243 1 860 446 XLS3_Contig3114 AT4G02790 GTP-binding family protein, contains Pfam domain, PF01926: GTPase of unknown function [ 22328255 NP_192188.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:1247416 CHROM_POS_END:1249351 } -=| MIDDLE_POINT:1248383 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 1.0 65 186 286 1 1044 372 XLS3_Contig3115 no_hits_found 0 0 XLS3_Contig3116 AT3G20260 expressed protein [ AT3G20260 30685695 NP_188661.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:7064196 CHROM_POS_END:7065757 } -=| MIDDLE_POINT:7064976 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.74 60 150 248 1 1193 437 XLS3_Contig3117 AT1G49760 polyadenylate-binding protein, putative / PABP, putative, similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from (Nicotiana tabacum) [ 18402769 NP_564554.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18420408 CHROM_POS_END:18423421 } -=| MIDDLE_POINT:18421914 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 70 207 295 1 1199 671 XLS3_Contig3118 no_hits_found 0 0 XLS3_Contig3119 AT1G15740 leucine-rich repeat family protein [ AT1G15740 30684506 NP_563980.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:5411504 CHROM_POS_END:5414539 } -=| MIDDLE_POINT:5413021 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 69 256 370 1 1459 585 XLS3_Contig3120 no_hits_found 0 0 XLS3_Contig3121 AT1G50010 tubulin alpha-2/alpha-4 chain (TUA2), identical to tubulin alpha-2/alpha-4 chain SP|P29510 GB:P29510 from (Arabidopsis thaliana) [ 15222856 NP_175423.1 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:18521405 CHROM_POS_END:18523397 } -=| MIDDLE_POINT:18522401 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 1.0 97 275 282 1 889 450 XLS3_Contig3122 AT1G06660 expressed protein [ AT1G06660 42561760 NP_172151.2 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:2037460 CHROM_POS_END:2040147 } -=| MIDDLE_POINT:2038803 |=| CHROM_ID:1 |=| [( Arabidopsis_thaliana )] |=- 0.34 35 108 304 1 984 481 XLS3_Contig3123 AT4G28770 expressed protein [ AT4G28770 15235419 NP_194606.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:14212183 CHROM_POS_END:14213524 } -=| MIDDLE_POINT:14212853 |=| CHROM_ID:4 |=| [( Arabidopsis_thaliana )] |=- 0.64 50 128 252 1 885 281 XLS3_Contig3124 AT3G56460 oxidoreductase, zinc-binding dehydrogenase family protein, low similarity to probable NADP-dependent oxidoreductase (zeta-crystallin homolog) P1 (SP|Q39172)(gi:886428) and P2 (SP|Q39173)(gi:886430), zeta-crystallin / quinone reductase (NADPH) - Mus musculus, PIR:A54932 [ 15228926 NP_191205.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:20944008 CHROM_POS_END:20945404 } -=| MIDDLE_POINT:20944706 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 1.0 77 208 269 1 992 348 XLS3_Contig3125 AT5G57690 diacylglycerol kinase, putative, contains INTERPRO domain, IPR001206, DAG-kinase catalytic domain [ 15242824 NP_200577.1 CDS reverse ] SINGLE_SPLICE_VAR { CHROM_POS_START:23389289 CHROM_POS_END:23391695 } -=| MIDDLE_POINT:23390492 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 61 223 364 1 1238 498 XLS3_Contig3126 AT3G06330 zinc finger (C3HC4-type RING finger) family protein, contains InterPro Entry IPR001841 Zn-finger, RING [ 18397535 NP_566281.1 CDS forward ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:1917340 CHROM_POS_END:1919715 } -=| MIDDLE_POINT:1918527 |=| CHROM_ID:3 |=| [( Arabidopsis_thaliana )] |=- 0.54 44 132 295 1 1144 426 XLS3_Contig3127 AT5G44120 12S seed storage protein (CRA1), nearly identical to SP|P15455 (Plant Mol Biol 11:805-820 (1988)) [ 15241422 NP_199225.1 CDS reverse ] MULTIPLE_SPLICE_VAR { CHROM_POS_START:17773687 CHROM_POS_END:17775473 } -=| MIDDLE_POINT:17774580 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 0.65 42 133 310 1 919 472 XLS3_Contig3128 AT5G48520 expressed protein, similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:XP_476910.1) [ 79531960 NP_199663.2 CDS forward ] SINGLE_SPLICE_VAR { CHROM_POS_START:19678633 CHROM_POS_END:19683373 } -=| MIDDLE_POINT:19681003 |=| CHROM_ID:5 |=| [( Arabidopsis_thaliana )] |=- 1.0 79 275 347 1 1378 617 XLS3_Contig3129 AT4G17650 aromati