Contig Viewer ( 2007 )

Contig Viewer ( 2007 )

This page is for getting info about contig assembly.
It will display the details of EST assembly graphically.



ContigID:
ContigIDs can be selected from the following assemblies:

example contig IDs: LACT_5CDS.CSA1.1394; HELI_7CDS.CSA1.3456; AST_11CDS.CSA1.2985

Assembly ID #Contigs Assembly Info
Genusepithetspecies listcomments
LACT_5CDS.CSA113129Lactucaspp.perennis saligna sativa serriola virosaassembly of the CDS regions only (EST fragments with homology to known plant genes)
HELI_7CDS.CSA117041Helianthusspp.annuus argophyllus ciliaris exilis paradoxus petiolaris tuberosusassembly of the CDS regions only (EST fragments with homology to known plant genes)
AST_11CDS.CSA126769[Compositae]---11 Compositae species ('other' than Helianthus and Lactuca)assembly of the CDS regions only (EST fragments with homology to known plant genes)


Blast_DB_parser

Contig Viewer was designed and implemented by Fallon Chen , Brian Chan and Alexander Kozik, UC Davis, CA