Step 9: Processing of the CAP3 output
Obtaining of the "Contig_Info" file
At this step we have used Python_CAP3_ContigExtractor_Feb_27_2004.py
script with option "1" to process CAP3 output and generate so called "Contig Info"
file. Below is the example of Python_CAP3_ContigExtractor_Feb_27_2004.py dialog:
$ python Python_CAP3_ContigExtractor_Feb_27_2004.py
What type of output do you want? (1/2): 1
Enter the SOURCE file name: tomato_ABC.cap3.out
Enter the DESTINATION file name: tomato_ABC.cap3.out.Info
tomato_ABC.cap3.out.Info file has been generated.
Below, is an example of five lines taken from
Selected Contig734 contains three ESTs in the assmbly and has length of 781 nucleotides.
Regions of spanning for every EST in the contig are displayed in brackets.