Lettuce Genetic Map Viewer Setup

FunCat Class	Position (Relative to LG)	Fill Color	Outline Color	Shape
Select all functional classes
METABOLISM	above below	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Rectangle Circle Rhombus TriangleA TriangleV
ENERGY	above below	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Rectangle Circle Rhombus TriangleA TriangleV
STORAGE PROTEIN	above below	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Rectangle Circle Rhombus TriangleA TriangleV
CELL CYCLE AND DNA PROCESSING	above below	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Rectangle Circle Rhombus TriangleA TriangleV
TRANSCRIPTION	above below	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Rectangle Circle Rhombus TriangleA TriangleV
PROTEIN SYNTHESIS	above below	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Rectangle Circle Rhombus TriangleA TriangleV
PROTEIN FATE (folding, modification, destination)	above below	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Rectangle Circle Rhombus TriangleA TriangleV
PROTEIN WITH BINDING FUNCTION OR COFACTOR REQUIREMENT (structural or catalytic)	above below	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Rectangle Circle Rhombus TriangleA TriangleV
REGULATION OF METABOLISM AND PROTEIN FUNCTION	above below	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Rectangle Circle Rhombus TriangleA TriangleV
CELLULAR TRANSPORT, TRANSPORT FACILITIES AND TRANSPORT ROUTES	above below	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Rectangle Circle Rhombus TriangleA TriangleV
CELLULAR COMMUNICATION/SIGNAL TRANSDUCTION MECHANISM	above below	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Rectangle Circle Rhombus TriangleA TriangleV
CELL RESCUE, DEFENSE AND VIRULENCE	above below	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Rectangle Circle Rhombus TriangleA TriangleV
stress response	above below default	default Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	default Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	default Rectangle Circle Rhombus TriangleA TriangleV
disease, virulence and defense	above below default	default Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	default Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	default Rectangle Circle Rhombus TriangleA TriangleV
resistance proteins	above below default	default Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	default Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	default Rectangle Circle Rhombus TriangleA TriangleV
defense related proteins	above below default	default Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	default Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	default Rectangle Circle Rhombus TriangleA TriangleV
virulence, disease factors	above below default	default Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	default Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	default Rectangle Circle Rhombus TriangleA TriangleV
detoxification	above below default	default Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	default Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	default Rectangle Circle Rhombus TriangleA TriangleV
degradation / modification of foreign (exogenous) compounds	above below default	default Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	default Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	default Rectangle Circle Rhombus TriangleA TriangleV
INTERACTION WITH THE ENVIRONMENT	above below	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Rectangle Circle Rhombus TriangleA TriangleV
SYSTEMIC INTERACTION WITH THE ENVIRONMENT	above below	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Rectangle Circle Rhombus TriangleA TriangleV
TRANSPOSABLE ELEMENTS, VIRAL AND PLASMID PROTEINS	above below	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Rectangle Circle Rhombus TriangleA TriangleV
CELL FATE	above below	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Rectangle Circle Rhombus TriangleA TriangleV
DEVELOPMENT (Systemic)	above below	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Rectangle Circle Rhombus TriangleA TriangleV
BIOGENESIS OF CELLULAR COMPONENTS	above below	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Rectangle Circle Rhombus TriangleA TriangleV
CELL TYPE DIFFERENTIATION	above below	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Rectangle Circle Rhombus TriangleA TriangleV
TISSUE DIFFERENTIATION	above below	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Rectangle Circle Rhombus TriangleA TriangleV
ORGAN DIFFERENTIATION	above below	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Rectangle Circle Rhombus TriangleA TriangleV
SUBCELLULAR LOCALIZATION	above below	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Rectangle Circle Rhombus TriangleA TriangleV
CELL TYPE LOCALIZATION	above below	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Rectangle Circle Rhombus TriangleA TriangleV
TISSUE LOCALIZATION	above below	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Rectangle Circle Rhombus TriangleA TriangleV
ORGAN LOCALIZATION	above below	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Rectangle Circle Rhombus TriangleA TriangleV
CLASSIFICATION NOT YET CLEAR-CUT	above below	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Rectangle Circle Rhombus TriangleA TriangleV
UNCLASSIFIED PROTEINS	above below	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Rectangle Circle Rhombus TriangleA TriangleV
Undefined	above below	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	Rectangle Circle Rhombus TriangleA TriangleV
BIN	above below default	default Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	default Black Blue Cyan Gold Green Grey Pink Purple Red Violet White Yellow Orange	default Rectangle Circle Rhombus TriangleA TriangleV

Select Linkage Group Thickness 1 2 3 5
Select Linkage Group Color Light grey Grey Black
Gene/Marker Size in Pixels X: 4 6 8 10 12 Y: 4 6 8 10 12
Pixels per ten centimorgans 50 100 150 200
Vertical distance between linkage groups 100 150