BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18815472|gb|BM536226.1|BM536226 EST589248 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG71P24 5' end, mRNA sequence (133 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g43690.1 unknown protein / ; supported by cDNA: gi_17978984 71 1e-13 >At1g43690.1 unknown protein / ; supported by cDNA: gi_17978984 Length = 599 Score = 70.9 bits (172), Expect = 1e-13 Identities = 30/38 (78%), Positives = 34/38 (88%) Frame = +1 Query: 19 VEVGFITLLESLNFCKVGLHLKCPAWQ*WVVGSESHYT 132 V+VGF+TLLESLNFCKVG +LKCP W WV+GSESHYT Sbjct: 363 VDVGFLTLLESLNFCKVGQNLKCPKWPIWVIGSESHYT 400 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,812,131 Number of Sequences: 27288 Number of extensions: 32871 Number of successful extensions: 98 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 98 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 98 length of database: 11,516,596 effective HSP length: 19 effective length of database: 10,998,124 effective search space used: 263954976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18815386|gb|BM536175.1|BM536175 EST589197 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG71B2 5' end, mRNA sequence (524 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g43640.1 putative signal recognition particle protein 14kD, A... 167 4e-42 >At2g43640.1 putative signal recognition particle protein 14kD, ATSRP14 / ; supported by full-length cDNA: Ceres: 97249. Length = 121 Score = 167 bits (422), Expect = 4e-42 Identities = 81/118 (68%), Positives = 99/118 (83%) Frame = +2 Query: 26 MVRLQPDPFLNELTSMFERTTEHGSVWVTLKHSSDKSKAQRNKMKTAGETLEFKCLIRAT 205 MV LQ DPFLNELTSMFE++ E GSVWVTLK SS KSK Q+ K+ + GE++E++CLIRAT Sbjct: 1 MVLLQLDPFLNELTSMFEKSKEKGSVWVTLKRSSLKSKVQKRKLSSVGESIEYRCLIRAT 60 Query: 206 DGKKNISTMVGAKDHQRFQASYAILLKARLTALKKRERKDKRKATDSDKKMDISKKKS 379 DGKK +ST VGAKDHQRFQASYA +LKA +TALKKRERKD++K+T+++KK S KS Sbjct: 61 DGKKTVSTSVGAKDHQRFQASYATILKAHMTALKKRERKDRKKSTEAEKKESTSTTKS 118 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,956,204 Number of Sequences: 27288 Number of extensions: 262609 Number of successful extensions: 1031 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 930 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1022 length of database: 11,516,596 effective HSP length: 93 effective length of database: 8,978,812 effective search space used: 727283772 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18815158|gb|BM536049.1|BM536049 EST589071 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG71A12 5' end, mRNA sequence (661 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g63810.1 hypothetical protein / similar to hypothetical pr... 146 8e-60 >At1g63810.1 hypothetical protein / similar to hypothetical protein GB:CAA22881 [Schizosaccharomyces pombe] Length = 1026 Score = 146 bits (368), Expect(2) = 8e-60 Identities = 83/162 (51%), Positives = 103/162 (63%), Gaps = 18/162 (11%) Frame = +3 Query: 3 KTAFLLRIAE-------------SLQNNWGMMFTATEDDVDVLMSGYAFRLKISHERALG 143 K+AFLL+IAE +LQN G+ TATED+VDV + GYAFRL+I HER L Sbjct: 625 KSAFLLKIAERWVKLLFVTLQTINLQNVKGIPCTATEDNVDVFIGGYAFRLRILHERGLS 684 Query: 144 LVTGQSNNSRH-----QWSLSADRKLLLQHQHASKINALRGRYPIYGPIVRLAKRWVSAH 308 LV +S S + S D+ L ++ QHAS IN L+GR+P+Y P+ RLAKRWVSAH Sbjct: 685 LVKRESEFSSFGVDPVKHVSSTDKMLFIRSQHASMINGLQGRFPVYAPVARLAKRWVSAH 744 Query: 309 LLSTVLTEEAVELLVSNLFLRPLPFEPPFSRITGFFEVLTII 434 L S L EEA+ELLV+ LFL PLP P SRI GF L ++ Sbjct: 745 LFSGCLAEEAIELLVAYLFLTPLPLGVPSSRINGFLRFLRLL 786 Score = 102 bits (253), Expect(2) = 8e-60 Identities = 48/83 (57%), Positives = 61/83 (72%) Frame = +1 Query: 412 FLRFLRLLSEYDWAFSPLIVDFDGDFSTEEKNKINENFMRSREEHEKDTQKSSPAMFLAT 591 FLRFLRLL++Y+W F PLIVD + DF ++ +IN+NFM SR+ +E+D Q S AMFLA Sbjct: 779 FLRFLRLLADYEWMFYPLIVDINNDFGRNDEKEINDNFMSSRKGYEEDKQNISSAMFLAA 838 Query: 592 KYDVASEAWTRSSPTTAELRRLV 660 YD ASEAWT +SP E +RLV Sbjct: 839 PYDKASEAWTSTSPNLLEQKRLV 861 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,848,747 Number of Sequences: 27288 Number of extensions: 297124 Number of successful extensions: 960 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 927 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 959 length of database: 11,516,596 effective HSP length: 95 effective length of database: 8,924,236 effective search space used: 1106605264 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18814903|gb|BM535903.1|BM535903 EST588925 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG70I17 5' end, mRNA sequence (623 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g13040.1 hypothetical protein / 125 2e-29 >At4g13040.1 hypothetical protein / Length = 196 Score = 125 bits (313), Expect = 2e-29 Identities = 60/83 (72%), Positives = 69/83 (82%), Gaps = 3/83 (3%) Frame = +1 Query: 382 EQTAQQFPEVKRRKRHRRKHFENQEPCLMRGVYFKNMKWQAAIKVDKKQIHLGTVGTQEE 561 + + ++ KRRK+HRRK NQEPCLMRGVY+KNMKWQAAIKV+KKQIHLGT +QEE Sbjct: 59 DSISPKYQPPKRRKQHRRKRVHNQEPCLMRGVYYKNMKWQAAIKVEKKQIHLGTFSSQEE 118 Query: 562 AARL---AAFMCGKEPNFELSEE 621 AARL AAFMCG+EPNFELSEE Sbjct: 119 AARLYDRAAFMCGREPNFELSEE 141 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,470,916 Number of Sequences: 27288 Number of extensions: 320377 Number of successful extensions: 936 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 911 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 934 length of database: 11,516,596 effective HSP length: 95 effective length of database: 8,924,236 effective search space used: 999514432 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18814463|gb|BM535648.1|BM535648 EST588670 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG67J13 5' end, mRNA sequence (589 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g07910.1 translation elongation factor EF-1 alpha / identi... 317 2e-87 >At1g07910.1 translation elongation factor EF-1 alpha / identical to GB:AAB07881 from [Arabidopsis thaliana] (Mol. Gen. Genet. 219 (1-2), 106-112 (1989)) Length = 1081 Score = 317 bits (813), Expect = 2e-87 Identities = 144/195 (73%), Positives = 175/195 (88%) Frame = +1 Query: 1 IAPSSPNISSKDMVSKNEGLIVFFPGIPGCAKSALCKEILNAPGGLEDDRPIHSLMGDLI 180 + P++P + K+ V K+EGLIVFFPGIPG AKSALCKE+LNAPGG DDRP+H+LMGDL+ Sbjct: 646 VTPATPEPAVKEAVQKDEGLIVFFPGIPGSAKSALCKELLNAPGGFGDDRPVHTLMGDLV 705 Query: 181 KGRYWQKVADERRRKPYSIMLADKNAPNEEVWKQIENMCLSTKASAIPVIPDSEGTEINP 360 KG+YW KVADERR+KP SIMLADKNAPNE+VW+QIE+MC T+ASA+P++ DSEGT+ NP Sbjct: 706 KGKYWPKVADERRKKPQSIMLADKNAPNEDVWRQIEDMCRRTRASAVPIVADSEGTDTNP 765 Query: 361 FSIDALAVFIFRVLQRVNHPGNLDKSSPNAGYVMLMFYHLYDGKSRQEFESELIERFGSL 540 +S+DALAVF+FRVLQRVNHPG LDK S NAGYV+LMFYHLY+GK+R EFESELIERFGSL Sbjct: 766 YSLDALAVFMFRVLQRVNHPGKLDKESSNAGYVLLMFYHLYEGKNRNEFESELIERFGSL 825 Query: 541 VRIPLLKPERSPLPD 585 +++PLLK +R+PLPD Sbjct: 826 IKMPLLKSDRTPLPD 840 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,019,686 Number of Sequences: 27288 Number of extensions: 282012 Number of successful extensions: 762 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 738 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 762 length of database: 11,516,596 effective HSP length: 94 effective length of database: 8,951,524 effective search space used: 904103924 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18814424|gb|BM535626.1|BM535626 EST588648 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG67F5 5' end, mRNA sequence (394 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g46060.1 hypothetical protein / predicted by genscan; supp... 162 4e-41 >At2g46060.1 hypothetical protein / predicted by genscan; supported by cDNA: gi_18087618 Length = 766 Score = 162 bits (411), Expect = 4e-41 Identities = 80/136 (58%), Positives = 100/136 (72%), Gaps = 6/136 (4%) Frame = +1 Query: 4 LYDASDKSVSFYIIYARGGTWSFGLRH------PISNRHSSTVETTMSISLERCPAKCSS 165 LY++S + V FYI+YAR GTWSFGLR P ++R S T+ +S+SLERCP CSS Sbjct: 465 LYNSSKEMVDFYILYAREGTWSFGLRQLIDSNTPAASRGSPTL---VSLSLERCPRGCSS 521 Query: 166 HGACKSVLDSSGLTFYSFCDCDRRTGGFDCSVELVSSSGQMWQSISLIGSNAAALLPAYW 345 +G C+ D++GLT YSFC CDR GGFDCS+E+VS + QSI+LI SNAAALLPAYW Sbjct: 522 YGQCRYAFDANGLTSYSFCSCDRTHGGFDCSIEIVSHQEHIVQSIALIASNAAALLPAYW 581 Query: 346 ALRHKAFAEWVLYTSS 393 ALR + + EWVL+TSS Sbjct: 582 ALRQREYPEWVLFTSS 597 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,162,589 Number of Sequences: 27288 Number of extensions: 186496 Number of successful extensions: 514 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 504 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 512 length of database: 11,516,596 effective HSP length: 88 effective length of database: 9,115,252 effective search space used: 382840584 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18814313|gb|BM535565.1|BM535565 EST588587 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG67E18 5' end, mRNA sequence (246 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g18250.1 putative protein / similar to unknown protein (db... 94 2e-20 At3g04040.1 hypothetical protein / predicted by genscan+ 84 1e-17 >At5g18250.1 putative protein / similar to unknown protein (dbj|BAA90342.1);supported by full-length cDNA: Ceres:1816. Length = 133 Score = 93.6 bits (231), Expect = 2e-20 Identities = 41/53 (77%), Positives = 46/53 (86%) Frame = +2 Query: 86 VRCPHCAGPLSKEMETSEWTVPPLIRDSFSMIGSAVGGTTSAFYGFNHVMPIV 244 +RC HCAGPL++ +ETS+WTV P IRDSFSMIGSAVGGT SAF GFNH MPIV Sbjct: 10 IRCHHCAGPLTRNLETSKWTVDPFIRDSFSMIGSAVGGTASAFIGFNHAMPIV 62 >At3g04040.1 hypothetical protein / predicted by genscan+ Length = 128 Score = 84.3 bits (207), Expect = 1e-17 Identities = 37/47 (78%), Positives = 41/47 (86%) Frame = +2 Query: 89 RCPHCAGPLSKEMETSEWTVPPLIRDSFSMIGSAVGGTTSAFYGFNH 229 RC HCAGPL+K +ET+EWTV P IRDSFSMIGSAVGGT SAF GF+H Sbjct: 11 RCHHCAGPLTKNLETNEWTVAPFIRDSFSMIGSAVGGTASAFIGFHH 57 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,328,587 Number of Sequences: 27288 Number of extensions: 93524 Number of successful extensions: 304 Number of sequences better than 1.0e-05: 4 Number of HSP's better than 0.0 without gapping: 297 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 304 length of database: 11,516,596 effective HSP length: 57 effective length of database: 9,961,180 effective search space used: 239068320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18813883|gb|BM535323.1|BM535323 EST588345 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG65K16 5' end, mRNA sequence (573 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g63420.1 putative protein / ; supported by cDNA: gi_12034... 102 1e-22 >At3g63420.1 putative protein / ; supported by cDNA: gi_12034687_gb_AF283673.1_AF283673 Length = 98 Score = 102 bits (254), Expect = 1e-22 Identities = 46/80 (57%), Positives = 57/80 (70%) Frame = +1 Query: 64 GKHRISAELKRLEQETRFLEEELELLDKMEKASAACKEMLSNVETRPDPLLPITHGPTNP 243 GKHRI AEL R+EQE FLE+EL+ ++ + S C+E+LS +E PDPLLP+T+GP N Sbjct: 19 GKHRILAELARVEQEVAFLEKELKEVENTDIVSTVCEELLSVIEKGPDPLLPLTNGPLNL 78 Query: 244 SWDRWFEGAQDASGCRCWIL 303 WDRWFEG GCRC IL Sbjct: 79 GWDRWFEGPNGGEGCRCLIL 98 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,173,521 Number of Sequences: 27288 Number of extensions: 259177 Number of successful extensions: 896 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 867 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 895 length of database: 11,516,596 effective HSP length: 94 effective length of database: 8,951,524 effective search space used: 859346304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18813865|gb|BM535314.1|BM535314 EST588336 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG65I16 5' end, mRNA sequence (636 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g30145.1 bcnt-like protein / ; supported by full-length cD... 181 3e-46 >At5g30145.1 bcnt-like protein / ; supported by full-length cDNA: Ceres: 9811. Length = 236 Score = 181 bits (459), Expect = 3e-46 Identities = 94/156 (60%), Positives = 127/156 (81%), Gaps = 6/156 (3%) Frame = +1 Query: 130 SEESKKLAAAALSAVKEAA-TAAASAGRVKV-ITEVRDFAGEDVEIKKYVDHNSAEASDK 303 SEE+K +AAAAL+AV+ A TAAA++ R K+ ITEV+DFAG+++E+K+ V+ +S EA ++ Sbjct: 81 SEEAKSIAAAALAAVRNATVTAAAASSRGKIEITEVKDFAGQEIEVKRLVEADSKEALER 140 Query: 304 GK----GPAAPASAVDIILEQIKKKQKLSVLDKTKKDWEGFKGENRGMEEELDAYKKSSN 471 G +A SAVD +LEQIKKKQKLSVLDKTKKDW +K E++G+E+ELD YKKSS+ Sbjct: 141 GNKGSSSSSAAPSAVDAVLEQIKKKQKLSVLDKTKKDWGEYKEEHKGVEDELDKYKKSSD 200 Query: 472 QYLDRVGFLERADYREFERERDARLGMHAKRKPESM 579 QYLD+VGFLERADYR+FE+ERDARL + +KR+ + + Sbjct: 201 QYLDKVGFLERADYRQFEKERDARLALQSKRRHDDV 236 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,143,571 Number of Sequences: 27288 Number of extensions: 303854 Number of successful extensions: 1345 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 1259 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1337 length of database: 11,516,596 effective HSP length: 95 effective length of database: 8,924,236 effective search space used: 1035211376 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18813374|gb|BM535036.1|BM535036 EST588058 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG64G4 5' end, mRNA sequence (597 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g08780.1 hypothetical protein / predicted by genscan; supp... 175 1e-44 >At3g08780.1 hypothetical protein / predicted by genscan; supported by cDNA: gi_19310496 Length = 313 Score = 175 bits (444), Expect = 1e-44 Identities = 81/165 (49%), Positives = 120/165 (72%) Frame = +3 Query: 3 SLPPSLFLLLSTPFQEQLIHTHEYKAFQYRISTDSFDPKSLDVINIGPSFRSHYGSFSPI 182 ++ S+F LL+ P +Q IHTHEY+A+Q+R S +P+S+ ++NIGP+FR HYGSFSP Sbjct: 146 NMASSVFFLLTMPLTDQCIHTHEYRAYQFRSSKQRLEPRSVGIVNIGPAFRGHYGSFSPK 205 Query: 183 SPFPSMTCDLRGPNAMAEDEKAETLVGIKRGLKDQKELDLCAEGFEIGRLSKLMGSDSSN 362 S FP + C+L +AM+ D +L K+ KDQKE+D AEGF++G L +L+G++++N Sbjct: 206 SGFPPLICELSS-SAMSVDCDESSLSAKKQSAKDQKEIDALAEGFQVGELKRLVGAEAAN 264 Query: 363 YTAELEHLYDKMLLKLDSLARSVETSSAKVLEQEKHNMKLRYKIA 497 YT +E +Y++ML K++SLA VE SSA+V +QEKHN KLR ++A Sbjct: 265 YTGGIEEMYERMLAKIESLASDVEKSSARVFQQEKHNRKLRNRVA 309 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,660,585 Number of Sequences: 27288 Number of extensions: 317881 Number of successful extensions: 1113 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 966 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1093 length of database: 11,516,596 effective HSP length: 94 effective length of database: 8,951,524 effective search space used: 930958496 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18813251|gb|BM534973.1|BM534973 EST587995 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG64I15 5' end, mRNA sequence (724 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g11980.1 putative protein / predicted protein W02G9.1 Caen... 267 1e-83 >At4g11980.1 putative protein / predicted protein W02G9.1 Caenorhabditis elegans cosmid W02G9, PID:g3165571; supported by cDNA: gi_15450340_gb_AY052271.1_ Length = 309 Score = 267 bits (683), Expect(2) = 1e-83 Identities = 134/191 (70%), Positives = 164/191 (85%) Frame = +2 Query: 11 KMSTTPPSQIADIINLPTQLDQPVSVVAAPGVSDTHFRNAIESSLFKQWLKNIQTETGLL 190 KMS++ S + I LP+Q ++PV V A G+S + FR+AI+SSLF+ WL+N+++E+G+L Sbjct: 35 KMSSSS-SSLTQSITLPSQPNEPVLVSATAGISSSDFRDAIDSSLFRNWLRNLESESGIL 93 Query: 191 ANGALSLKQVLIQGVDMFGERLGFLKFKADIIDKETGQKVPGIVFARGPAVAVLILLDYE 370 A+G+++LKQVLIQGVDMFG+R+GFLKFKADI DKETGQKVPGIVFARGPAVAVLILL+ + Sbjct: 94 ADGSMTLKQVLIQGVDMFGKRIGFLKFKADIFDKETGQKVPGIVFARGPAVAVLILLESD 153 Query: 371 GETYAVLTEQVRVPVGRLILELPAGMLDDDQGDFAGTAVREVEEETGIHLNVHDMVDLTA 550 GETYAVLTEQVRVP G+++LELPAGMLDDD+GDF GTAVREVEEE GI L DMVDLTA Sbjct: 154 GETYAVLTEQVRVPTGKIVLELPAGMLDDDKGDFVGTAVREVEEEIGIKLKKEDMVDLTA 213 Query: 551 FLDASTGGQSF 583 FLD STG + F Sbjct: 214 FLDPSTGYRIF 224 Score = 60.5 bits (145), Expect(2) = 1e-83 Identities = 27/38 (71%), Positives = 33/38 (86%) Frame = +1 Query: 610 KMSLFLYRGNVSKEKIQQLQGKETGLRDHGELIKVHVV 723 +MS+FLYRG V KE I+QLQGKETGLR+HGE IKV ++ Sbjct: 233 EMSVFLYRGQVEKETIRQLQGKETGLREHGEFIKVRLI 270 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,378,055 Number of Sequences: 27288 Number of extensions: 404703 Number of successful extensions: 1369 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 1301 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1368 length of database: 11,516,596 effective HSP length: 97 effective length of database: 8,869,660 effective search space used: 1268361380 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18813232|gb|BM534963.1|BM534963 EST587985 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG64G13 5' end, mRNA sequence (767 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g49540.1 hypothetical protein / similar to hypothetical pr... 345 2e-95 At5g08560.1 WD-repeat protein-like / ; supported by cDNA: gi... 59 2e-09 At5g08390.1 katanin p80 subunit - like protein / katanin p80 ... 57 1e-08 At5g23430.1 putative protein / contains similarity to unknown... 57 1e-08 At3g49660.1 G-protein beta-subunit (transducin) family / beta... 56 2e-08 At4g02730.1 G-protein beta family / similar to C. elegans put... 55 5e-08 At1g18080.1 G-protein beta family / identical to WD-40 repeat... 53 2e-07 At1g61210.1 G-protein beta family / contains similarity to ka... 52 3e-07 At1g48630.1 guanine nucleotide-binding protein, putative / si... 51 8e-07 At5g25150.1 transcription initiation factor IID-associated facto... 51 8e-07 At2g26060.1 G-protein beta family / ;supported by full-length... 50 1e-06 At1g11160.1 hypothetical protein / similar to hypothetical pr... 50 2e-06 At5g52820.1 Notchless protein homolog / 49 4e-06 At2g43770.1 G-protein beta-subunit (transducin) family / 49 4e-06 At3g18130.1 protein kinase C-receptor/G-protein, putative / s... 48 5e-06 At5g64630.1 FAS2 (dbj|BAA77766.1) / ; supported by cDNA: gi_... 47 9e-06 At2g01330.1 putative stress protein / 47 9e-06 >At1g49540.1 hypothetical protein / similar to hypothetical protein GB:AAD43147 GI:5430747 from [Arabidopsis thaliana] Length = 840 Score = 345 bits (884), Expect = 2e-95 Identities = 164/254 (64%), Positives = 200/254 (78%), Gaps = 3/254 (1%) Frame = +2 Query: 14 EGFDTLETVPEAVPVVLTEPPIEEQLAWHTLWPESHKLYGHGNELFSLCCDHDGKLVASS 193 EG DT ETVPEA P L EPPIE+QLA+HTLWPESHKLYGHGNELFSLC DH G LVASS Sbjct: 559 EGLDTFETVPEAAPAELKEPPIEDQLAFHTLWPESHKLYGHGNELFSLCSDHKGNLVASS 618 Query: 194 CKAQSAPVAEIWLWQVGSWKSVGRLRSHSLTVTQMEFSHDNKYLLAVSRDRHFSVFQINH 373 CKAQSA +AEIWLW+VG+WK+VGRL+SHSLTVT +EFS+D+ LL+VSRDRHFSVF I Sbjct: 619 CKAQSASMAEIWLWEVGTWKAVGRLQSHSLTVTHLEFSYDDTLLLSVSRDRHFSVFSIQR 678 Query: 374 KGTDEIDYQLVAKQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVGTETSVKLLLTLP 553 E+ ++L+AK EAHKRIIW+CSWNPFGH+FAT SRDKTVKIW+V + +K +L LP Sbjct: 679 TDNGEVSHKLMAKVEAHKRIIWACSWNPFGHQFATSSRDKTVKIWSVENDARIKQILVLP 738 Query: 554 PFKSSVTALSWLSLDNHSNHGLLAVGMENGLIELWN---LDSRGGDGHLSVQNASPAVKF 724 PF SSVTA++W LD + G +AVGME+GLIEL N +++ G + A+ A++ Sbjct: 739 PFGSSVTAVAWTGLDRNEKSGCVAVGMESGLIELSNVKIIETEEG----TTATAALALRL 794 Query: 725 DPFLCHVSTVQRLS 766 +PF+CHVS V RL+ Sbjct: 795 EPFMCHVSAVNRLA 808 >At5g08560.1 WD-repeat protein-like / ; supported by cDNA: gi_15450909_gb_AY054535.1_ Length = 589 Score = 59.3 bits (142), Expect = 2e-09 Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 3/169 (1%) Frame = +2 Query: 170 DGKLVASSCKAQSAPVAEIWLWQVGSWKSVGRLRSHSLTVTQMEFSHDNKYLLAVSRDRH 349 DGK + S CK + + +V RL +T S+DNKY+L ++ Sbjct: 414 DGKWLVSVCKDSVISLFD-------REATVERLIEEEDMITSFSLSNDNKYILVNLLNQE 466 Query: 350 FSVFQINHKGTDEIDYQLVAKQEAHKR---IIWSCSWNPFGHEFATGSRDKTVKIWAVGT 520 ++ I E D ++V++ + HKR II SC A+GS D V IW T Sbjct: 467 IRLWNI------EGDPKIVSRYKGHKRSRFIIRSCFGGYKQAFIASGSEDSQVYIWHRST 520 Query: 521 ETSVKLLLTLPPFKSSVTALSWLSLDNHSNHGLLAVGMENGLIELWNLD 667 KL++ LP +V +SW + H +LA ++G I +W LD Sbjct: 521 G---KLIVELPGHAGAVNCVSWSPTNLH----MLASASDDGTIRIWGLD 562 Score = 47.4 bits (111), Expect = 9e-06 Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 2/138 (1%) Frame = +2 Query: 266 LRSHSLTVTQMEFSHDNKYLLAVSRDRHFSVFQINHKGTDEIDYQLVAKQEAHKRIIWSC 445 L SH+ V ++FSH+ KYL + S+D+ +++I+ G + + LV H + + + Sbjct: 270 LESHTDEVWFLQFSHNGKYLASSSKDQTAIIWEISADGHISLKHTLV----GHHKPVIAI 325 Query: 446 SWNPFGHEFATGSRDKTVKIWAVGTETSVKLLLTLPPFKSSVTALS--WLSLDNHSNHGL 619 W+P + T ++ ++ W V + V + K ++ +S W G+ Sbjct: 326 LWSPDDRQVLTCGAEEVIRRWDVDSGDCVHMY-----EKGGISPISCGWYP----DGQGI 376 Query: 620 LAVGMENGLIELWNLDSR 673 +A GM + I +W+LD R Sbjct: 377 IA-GMTDRSICMWDLDGR 393 >At5g08390.1 katanin p80 subunit - like protein / katanin p80 subunit, Strongylocentrotus purpuratus, EMBL:AF052433 Length = 871 Score = 57.0 bits (136), Expect = 1e-08 Identities = 49/182 (26%), Positives = 77/182 (41%) Frame = +2 Query: 125 LYGHGNELFSLCCDHDGKLVASSCKAQSAPVAEIWLWQVGSWKSVGRLRSHSLTVTQMEF 304 LYGH + + S+ D LVA+ A I LW + K V L H + F Sbjct: 148 LYGHSSGIDSVTFDASEGLVAAG-----AASGTIKLWDLEEAKVVRTLTGHRSNCVSVNF 202 Query: 305 SHDNKYLLAVSRDRHFSVFQINHKGTDEIDYQLVAKQEAHKRIIWSCSWNPFGHEFATGS 484 ++ + S D + ++ I KG + + H R + + P G +G Sbjct: 203 HPFGEFFASGSLDTNLKIWDIRKKGC-------IHTYKGHTRGVNVLRFTPDGRWIVSGG 255 Query: 485 RDKTVKIWAVGTETSVKLLLTLPPFKSSVTALSWLSLDNHSNHGLLAVGMENGLIELWNL 664 D VK+W + T+ KLL FKS + SLD H + LLA G + ++ W+L Sbjct: 256 EDNVVKVWDL---TAGKLL---HEFKSHEGKIQ--SLDFHPHEFLLATGSADKTVKFWDL 307 Query: 665 DS 670 ++ Sbjct: 308 ET 309 >At5g23430.1 putative protein / contains similarity to unknown protein (gb|AAB71474.1) Length = 922 Score = 57.0 bits (136), Expect = 1e-08 Identities = 46/182 (25%), Positives = 76/182 (41%) Frame = +2 Query: 125 LYGHGNELFSLCCDHDGKLVASSCKAQSAPVAEIWLWQVGSWKSVGRLRSHSLTVTQMEF 304 LYGH + + S+ D LVA+ A I LW + K V L H ++F Sbjct: 55 LYGHSSGIDSVTFDASEVLVAAG-----AASGTIKLWDLEEAKIVRTLTGHRSNCISVDF 109 Query: 305 SHDNKYLLAVSRDRHFSVFQINHKGTDEIDYQLVAKQEAHKRIIWSCSWNPFGHEFATGS 484 ++ + S D + ++ I KG + + H R + + P G +G Sbjct: 110 HPFGEFFASGSLDTNLKIWDIRKKGC-------IHTYKGHTRGVNVLRFTPDGRWVVSGG 162 Query: 485 RDKTVKIWAVGTETSVKLLLTLPPFKSSVTALSWLSLDNHSNHGLLAVGMENGLIELWNL 664 D VK+W + T+ KLL + + SLD H + LLA G + ++ W+L Sbjct: 163 EDNIVKVWDL---TAGKLLTEFKSHEGQIQ-----SLDFHPHEFLLATGSADRTVKFWDL 214 Query: 665 DS 670 ++ Sbjct: 215 ET 216 >At3g49660.1 G-protein beta-subunit (transducin) family / beta-transducin, Schizosaccharomyces pombe, EMBL:CAA17803 Length = 317 Score = 55.8 bits (133), Expect = 2e-08 Identities = 50/214 (23%), Positives = 90/214 (41%), Gaps = 3/214 (1%) Frame = +2 Query: 101 TLWPESHKLYGHGNELFSLCCDHDGKLVASSCKAQSAPVAEIWLWQVGSWKSVGRLRSHS 280 T + S L H + S+ DG+L+AS+ ++ I + V H Sbjct: 12 TPYVHSQTLTSHNRAVSSVKFSSDGRLLASASADKTIRTYTINTINDPIAEPVQEFTGHE 71 Query: 281 LTVTQMEFSHDNKYLLAVSRDRHFSVFQINHKGTDEIDYQLVAKQEAHKRIIWSCSWNPF 460 ++ + FS D +++++ S D+ ++ + L+ H + ++NP Sbjct: 72 NGISDVAFSSDARFIVSASDDKTLKLWDVETGS-------LIKTLIGHTNYAFCVNFNPQ 124 Query: 461 GHEFATGSRDKTVKIWAVGTETSVKLLLTLPPFKSSVTALSWLSLDNHSNHGLLAVGMEN 640 + +GS D+TV+IW V T+ K L LP VTA +D + + L+ + Sbjct: 125 SNMIVSGSFDETVRIWDV---TTGKCLKVLPAHSDPVTA-----VDFNRDGSLIVSSSYD 176 Query: 641 GLIELWNLDSRGGDGH---LSVQNASPAVKFDPF 733 GL +W+ G GH + + +P V F F Sbjct: 177 GLCRIWD----SGTGHCVKTLIDDENPPVSFVRF 206 >At4g02730.1 G-protein beta family / similar to C. elegans putative WD-repeat protein C14B1.4, GenBank accession number Q17963;supported by full-length cDNA: Ceres:41490. Length = 333 Score = 54.7 bits (130), Expect = 5e-08 Identities = 44/203 (21%), Positives = 89/203 (43%) Frame = +2 Query: 125 LYGHGNELFSLCCDHDGKLVASSCKAQSAPVAEIWLWQVGSWKSVGRLRSHSLTVTQMEF 304 L GH + + +DG L+AS+ ++ + LW ++ + R HS ++ + + Sbjct: 39 LEGHTAAISCVKFSNDGNLLASASVDKT-----MILWSATNYSLIHRYEGHSSGISDLAW 93 Query: 305 SHDNKYLLAVSRDRHFSVFQINHKGTDEIDYQLVAKQEAHKRIIWSCSWNPFGHEFATGS 484 S D+ Y + S D ++ Y+ + H ++ ++NP + +GS Sbjct: 94 SSDSHYTCSASDDCTLRIWDARSP------YECLKVLRGHTNFVFCVNFNPPSNLIVSGS 147 Query: 485 RDKTVKIWAVGTETSVKLLLTLPPFKSSVTALSWLSLDNHSNHGLLAVGMENGLIELWNL 664 D+T++IW V T V+++ K+ +S S+ + + L+ +G ++W+ Sbjct: 148 FDETIRIWEVKTGKCVRMI------KAHSMPIS--SVHFNRDGSLIVSASHDGSCKIWDA 199 Query: 665 DSRGGDGHLSVQNASPAVKFDPF 733 G + + SPAV F F Sbjct: 200 -KEGTCLKTLIDDKSPAVSFAKF 221 >At1g18080.1 G-protein beta family / identical to WD-40 repeat protein GI:2289095 from (Arabidopsis thaliana);supported by full-length cDNA: Ceres:7026. Length = 327 Score = 52.8 bits (125), Expect = 2e-07 Identities = 50/184 (27%), Positives = 83/184 (44%), Gaps = 3/184 (1%) Frame = +2 Query: 122 KLYGHGNELFSLCCDHDGKLVASSCKAQSAPVAEIWLWQVGSWKSVGRLRSHSLTVTQME 301 +L GH + + + DG+ S E+ LW + + S R H+ V + Sbjct: 58 RLTGHSHFVEDVVLSSDGQFALSGSWD-----GELRLWDLAAGVSTRRFVGHTKDVLSVA 112 Query: 302 FSHDNKYLLAVSRDRHFSVFQINHKGTDEIDYQLVAKQEAHKRIIWSC---SWNPFGHEF 472 FS DN+ +++ SRDR ++ E Y + E H+ + SC S N Sbjct: 113 FSLDNRQIVSASRDRTIKLWNT----LGECKYTISEGGEGHRDWV-SCVRFSPNTLQPTI 167 Query: 473 ATGSRDKTVKIWAVGTETSVKLLLTLPPFKSSVTALSWLSLDNHSNHGLLAVGMENGLIE 652 + S DKTVK+W + ++ KL TL V+ ++ +S D L A G ++G++ Sbjct: 168 VSASWDKTVKVWNL---SNCKLRSTLAGHTGYVSTVA-VSPDG----SLCASGGKDGVVL 219 Query: 653 LWNL 664 LW+L Sbjct: 220 LWDL 223 >At1g61210.1 G-protein beta family / contains similarity to katanin p80 subunit GI:3005601 from [Strongylocentrotus purpuratus] Length = 282 Score = 52.4 bits (124), Expect = 3e-07 Identities = 46/182 (25%), Positives = 75/182 (40%) Frame = +2 Query: 125 LYGHGNELFSLCCDHDGKLVASSCKAQSAPVAEIWLWQVGSWKSVGRLRSHSLTVTQMEF 304 L GH + + S+ D LV + + I LW V K V H + +EF Sbjct: 84 LCGHTSAVDSVAFDSAEVLVLAGASS-----GVIKLWDVEEAKMVRAFTGHRSNCSAVEF 138 Query: 305 SHDNKYLLAVSRDRHFSVFQINHKGTDEIDYQLVAKQEAHKRIIWSCSWNPFGHEFATGS 484 ++L + S D + ++ I KG + + H R I + + P G +G Sbjct: 139 HPFGEFLASGSSDANLKIWDIRKKG-------CIQTYKGHSRGISTIRFTPDGRWVVSGG 191 Query: 485 RDKTVKIWAVGTETSVKLLLTLPPFKSSVTALSWLSLDNHSNHGLLAVGMENGLIELWNL 664 D VK+W + T+ KLL + + SLD H LLA G + ++ W+L Sbjct: 192 LDNVVKVWDL---TAGKLLHEFKFHEGPIR-----SLDFHPLEFLLATGSADRTVKFWDL 243 Query: 665 DS 670 ++ Sbjct: 244 ET 245 >At1g48630.1 guanine nucleotide-binding protein, putative / similar to guanine nucleotide-binding protein GI:9294068 from (Arabidopsis thaliana); supported by cDNA: 38966. Length = 326 Score = 50.8 bits (120), Expect = 8e-07 Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 3/184 (1%) Frame = +2 Query: 122 KLYGHGNELFSLCCDHDGKLVASSCKAQSAPVAEIWLWQVGSWKSVGRLRSHSLTVTQME 301 ++ GH + + + DG+ S E+ LW + + +S R H+ V + Sbjct: 58 RMTGHSHFVQDVVLSSDGQFALSGSWD-----GELRLWDLATGESTRRFVGHTKDVLSVA 112 Query: 302 FSHDNKYLLAVSRDRHFSVFQINHKGTDEIDYQLVAKQEAHKRIIWSC---SWNPFGHEF 472 FS DN+ +++ SRDR ++ E Y +++ + HK + SC S N Sbjct: 113 FSTDNRQIVSASRDRTIKLWNT----LGECKY-TISEADGHKEWV-SCVRFSPNTLVPTI 166 Query: 473 ATGSRDKTVKIWAVGTETSVKLLLTLPPFKSSVTALSWLSLDNHSNHGLLAVGMENGLIE 652 + S DKTVK+W + + KL TL + ++ +S D L A G ++G+I Sbjct: 167 VSASWDKTVKVWNL---QNCKLRNTLAGHSGYLNTVA-VSPDG----SLCASGGKDGVIL 218 Query: 653 LWNL 664 LW+L Sbjct: 219 LWDL 222 >At5g25150.1 transcription initiation factor IID-associated factor-like protein / 100 kDa subunit of Pol II transcription factor - Homo sapiens, EMBL:X95525 Length = 700 Score = 50.8 bits (120), Expect = 8e-07 Identities = 46/187 (24%), Positives = 77/187 (40%), Gaps = 19/187 (10%) Frame = +2 Query: 167 HDGKLVASSCKAQSAPVAEIW-LWQVGSW------------------KSVGRLRSHSLTV 289 HDG LVA S V ++ + Q GS +S L HS V Sbjct: 362 HDGSLVAGGFSDSSIKVWDMAKIGQAGSGALQAENDSSDQSIGPNGRRSYTLLLGHSGPV 421 Query: 290 TQMEFSHDNKYLLAVSRDRHFSVFQINHKGTDEIDYQLVAKQEAHKRIIWSCSWNPFGHE 469 FS ++L+ S D ++ + +++ LV + H +W ++PFGH Sbjct: 422 YSATFSPPGDFVLSSSADTTIRLW------STKLNANLVC-YKGHNYPVWDAQFSPFGHY 474 Query: 470 FATGSRDKTVKIWAVGTETSVKLLLTLPPFKSSVTALSWLSLDNHSNHGLLAVGMENGLI 649 FA+ S D+T +IW++ + P + LS +D H N +A G + + Sbjct: 475 FASCSHDRTARIWSMD---------RIQPLRIMAGHLS--DVDWHPNCNYIATGSSDKTV 523 Query: 650 ELWNLDS 670 LW++ + Sbjct: 524 RLWDVQT 530 Score = 49.7 bits (117), Expect = 2e-06 Identities = 47/182 (25%), Positives = 76/182 (40%) Frame = +2 Query: 125 LYGHGNELFSLCCDHDGKLVASSCKAQSAPVAEIWLWQVGSWKSVGRLRSHSLTVTQMEF 304 L GH ++S G V SS + I LW ++ + H+ V +F Sbjct: 414 LLGHSGPVYSATFSPPGDFVLSSSADTT-----IRLWSTKLNANLVCYKGHNYPVWDAQF 468 Query: 305 SHDNKYLLAVSRDRHFSVFQINHKGTDEIDYQLVAKQEAHKRIIWSCSWNPFGHEFATGS 484 S Y + S DR ++ ++ Q + H + W+P + ATGS Sbjct: 469 SPFGHYFASCSHDRTARIWSMDR-------IQPLRIMAGH---LSDVDWHPNCNYIATGS 518 Query: 485 RDKTVKIWAVGTETSVKLLLTLPPFKSSVTALSWLSLDNHSNHGLLAVGMENGLIELWNL 664 DKTV++W V T V++ + +S V LSL + +A G E+G I +W+L Sbjct: 519 SDKTVRLWDVQTGECVRIFI---GHRSMV-----LSLAMSPDGRYMASGDEDGTIMMWDL 570 Query: 665 DS 670 + Sbjct: 571 ST 572 >At2g26060.1 G-protein beta family / ;supported by full-length cDNA: Ceres:142426. Length = 352 Score = 50.1 bits (118), Expect = 1e-06 Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 7/135 (5%) Frame = +2 Query: 125 LYGHGNELFSLCCDHDGKLVASSCKAQSAPVAEIWLWQV---GSWKSVGRLRSHSLTVTQ 295 L GH NE+ S+ + G +A+ + +S +W+W+V + L H+ V Sbjct: 114 LEGHENEVKSVSWNASGSCLATCSRDKS-----VWIWEVLEGNEYDCAAVLTGHTQDVKM 168 Query: 296 MEFSHDNKYLLAVSRDRHFSVFQINHKGTDEIDYQLVA----KQEAHKRIIWSCSWNPFG 463 +++ L + S D V+ D+ +YQ V H +WS S+N G Sbjct: 169 VQWHPTMDVLFSCSYDNTIKVWWSED---DDGEYQCVQTLGESNNGHSSTVWSISFNAAG 225 Query: 464 HEFATGSRDKTVKIW 508 + T S D T+KIW Sbjct: 226 DKMVTCSDDLTLKIW 240 >At1g11160.1 hypothetical protein / similar to hypothetical protein GB:AAD49999 GI:5734734 from [Arabidopsis thaliana] Length = 974 Score = 49.7 bits (117), Expect = 2e-06 Identities = 44/182 (24%), Positives = 76/182 (41%) Frame = +2 Query: 125 LYGHGNELFSLCCDHDGKLVASSCKAQSAPVAEIWLWQVGSWKSVGRLRSHSLTVTQMEF 304 L GH + + S+ + + LV + + I LW + K V H + +EF Sbjct: 3 LCGHTSPVDSVAFNSEEVLVLAGASS-----GVIKLWDLEESKMVRAFTGHRSNCSAVEF 57 Query: 305 SHDNKYLLAVSRDRHFSVFQINHKGTDEIDYQLVAKQEAHKRIIWSCSWNPFGHEFATGS 484 ++L + S D + V+ KG + + H R I + ++P G +G Sbjct: 58 HPFGEFLASGSSDTNLRVWDTRKKG-------CIQTYKGHTRGISTIEFSPDGRWVVSGG 110 Query: 485 RDKTVKIWAVGTETSVKLLLTLPPFKSSVTALSWLSLDNHSNHGLLAVGMENGLIELWNL 664 D VK+W + T+ KLL + + SLD H LLA G + ++ W+L Sbjct: 111 LDNVVKVWDL---TAGKLLHEFKCHEGPIR-----SLDFHPLEFLLATGSADRTVKFWDL 162 Query: 665 DS 670 ++ Sbjct: 163 ET 164 >At5g52820.1 Notchless protein homolog / Length = 473 Score = 48.5 bits (114), Expect = 4e-06 Identities = 39/146 (26%), Positives = 66/146 (44%), Gaps = 1/146 (0%) Frame = +2 Query: 224 IWLWQVG-SWKSVGRLRSHSLTVTQMEFSHDNKYLLAVSRDRHFSVFQINHKGTDEIDYQ 400 ++LW+ S + RL H V + FS D K++ + S D+ ++ + I Q Sbjct: 341 MFLWEPSVSKQPKKRLTGHQQLVNHVYFSPDGKWIASASFDKSVRLW-------NGITGQ 393 Query: 401 LVAKQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVGTETSVKLLLTLPPFKSSVTAL 580 V H ++ SW+ +GS+D T+KIW + T+ KL LP V A+ Sbjct: 394 FVTVFRGHVGPVYQVSWSADSRLLLSGSKDSTLKIWEIRTK---KLKQDLPGHADEVFAV 450 Query: 581 SWLSLDNHSNHGLLAVGMENGLIELW 658 W S D + G ++ +++LW Sbjct: 451 DW-SPDGEK----VVSGGKDRVLKLW 471 >At2g43770.1 G-protein beta-subunit (transducin) family / Length = 343 Score = 48.5 bits (114), Expect = 4e-06 Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 1/118 (0%) Frame = +2 Query: 221 EIWLWQVGSWKSVGRLRSHSLTVTQMEFSHDNKYLLAVSRDRHFSVFQINHKGTDEIDYQ 400 ++ +W + ++ L H T+T M S D YLL D V+ + + Sbjct: 203 DVKVWDLRKGEATMTLEGHQDTITGMSLSPDGSYLLTNGMDNKLCVWDMRPYAPQNRCVK 262 Query: 401 LV-AKQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVGTETSVKLLLTLPPFKSSV 571 + Q ++ + CSW+P G + GS D+ V IW TS + + LP SV Sbjct: 263 IFEGHQHNFEKNLLKCSWSPDGTKVTAGSSDRMVHIW---DTTSRRTIYKLPGHTGSV 317 >At3g18130.1 protein kinase C-receptor/G-protein, putative / similar to uanine nucleotide binding protein (G protein), beta polypeptide GB:NP_006089 [Homo sapiens]; contains Pfam profile: PF00400 WD domain, G-beta repeat (7 copies); supported by cDNA: gi_15215619_gb_AY050338.1_ Length = 326 Score = 48.1 bits (113), Expect = 5e-06 Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 3/184 (1%) Frame = +2 Query: 122 KLYGHGNELFSLCCDHDGKLVASSCKAQSAPVAEIWLWQVGSWKSVGRLRSHSLTVTQME 301 +L GH + + + DG+ S E+ LW + + ++ R H+ V + Sbjct: 58 RLTGHSHFVEDVVLSSDGQFALSGSWD-----GELRLWDLATGETTRRFVGHTKDVLSVA 112 Query: 302 FSHDNKYLLAVSRDRHFSVFQINHKGTDEIDYQLVAKQEAHKRIIWSC---SWNPFGHEF 472 FS DN+ +++ SRDR ++ E Y +++ + HK + SC S N Sbjct: 113 FSTDNRQIVSASRDRTIKLWNT----LGECKY-TISEGDGHKEWV-SCVRFSPNTLVPTI 166 Query: 473 ATGSRDKTVKIWAVGTETSVKLLLTLPPFKSSVTALSWLSLDNHSNHGLLAVGMENGLIE 652 + S DKTVK+W + + KL +L + ++ +S D L A G ++G+I Sbjct: 167 VSASWDKTVKVWNL---QNCKLRNSLVGHSGYLNTVA-VSPDG----SLCASGGKDGVIL 218 Query: 653 LWNL 664 LW+L Sbjct: 219 LWDL 222 >At5g64630.1 FAS2 (dbj|BAA77766.1) / ; supported by cDNA: gi_14030688_gb_AF375435.1_AF375435 Length = 397 Score = 47.4 bits (111), Expect = 9e-06 Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 6/140 (4%) Frame = +2 Query: 134 HGNELFSLCCDHDGKLVASSCKAQSAPVAEIWLWQVG------SWKSVGRLRSHSLTVTQ 295 HG + ++ G+L+AS A E+++W++ SWK L H V Sbjct: 63 HGCAVNTIRFSPSGELLASG-----ADGGELFIWKLHPSETNQSWKVHKSLSFHRKDVLD 117 Query: 296 MEFSHDNKYLLAVSRDRHFSVFQINHKGTDEIDYQLVAKQEAHKRIIWSCSWNPFGHEFA 475 +++S D+ YL++ S D ++ +N +I +AH + +W+P A Sbjct: 118 LQWSPDDAYLISGSVDNSCIIWDVNKGSVHQI-------LDAHCHYVQGVAWDPLAKYVA 170 Query: 476 TGSRDKTVKIWAVGTETSVK 535 + S D+T +I+A +T K Sbjct: 171 SLSSDRTCRIYANKPQTKSK 190 >At2g01330.1 putative stress protein / Length = 611 Score = 47.4 bits (111), Expect = 9e-06 Identities = 35/133 (26%), Positives = 62/133 (46%) Frame = +2 Query: 269 RSHSLTVTQMEFSHDNKYLLAVSRDRHFSVFQINHKGTDEIDYQLVAKQEAHKRIIWSCS 448 R HS V + +S D + VS D+ ++ + K D++ +A ++ HK I++ S Sbjct: 185 REHSNFVNCIRYSPDGTKFITVSSDKKGMIY--DGKTGDKVGE--LASEDGHKGSIYAVS 240 Query: 449 WNPFGHEFATGSRDKTVKIWAVGTETSVKLLLTLPPFKSSVTALSWLSLDNHSNHGLLAV 628 W+P T S DK+ K+W V + ++ ++ F S A L N L+ V Sbjct: 241 WSPDSKRVLTVSADKSAKVWEVAEDGTIGSVIKTLSFMESGGAEDMLVGCLWQNDHLITV 300 Query: 629 GMENGLIELWNLD 667 + G + L++ D Sbjct: 301 SL-GGTMSLFSAD 312 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,047,473 Number of Sequences: 27288 Number of extensions: 406396 Number of successful extensions: 1563 Number of sequences better than 1.0e-05: 34 Number of HSP's better than 0.0 without gapping: 1212 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1472 length of database: 11,516,596 effective HSP length: 97 effective length of database: 8,869,660 effective search space used: 1401406280 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18265080|gb|BM413450.1|BM413450 EST587777 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG63I20 5' end, mRNA sequence (744 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g71860.1 protein tyrosine phosphatase / identical to GB:C... 350 5e-97 >At1g71860.1 protein tyrosine phosphatase / identical to GB:CAA06978 GI:3413425 from [Arabidopsis thaliana] (Plant Mol. Biol. 39 (3), 593-605 (1999)); supported by cDNA: gi_3800745_gb_AF055635.1_AF055635 Length = 340 Score = 350 bits (898), Expect = 5e-97 Identities = 168/245 (68%), Positives = 200/245 (81%), Gaps = 3/245 (1%) Frame = +2 Query: 17 RCHSPDKIASEFSTLQENRLKASEMKSRCLVALDSTNISKNRYTDVIPFDNNRVVLDPCK 196 + +PD IA EF+ LQ NR+ SE+ VA++S N+ KNRY+DV+PFD NR+VL+PCK Sbjct: 51 KIQNPDSIAHEFTGLQANRMWPSELLLNSTVAMNSVNVEKNRYSDVVPFDKNRIVLNPCK 110 Query: 197 DYRPSAKGYINASFIEISEG--VSRFVATQGPLAHTFEDFWEMIIQQRCPVIVMLTRLVD 370 D SAKGY+NAS I+ SE +S+F+ATQGPL HT EDFWEM+IQQ CP+IVMLTRLVD Sbjct: 111 D--SSAKGYVNASLIKTSESESISQFIATQGPLPHTMEDFWEMVIQQHCPIIVMLTRLVD 168 Query: 371 NYKMVKCGDYFQAEDGPRTFGNICIVTKYM-TSDASLVLRTLEVNYIESEEPPLCVLHIQ 547 N + VKCGDYFQ EDGPR FGNI + TK++ T+D SL+LR LEVNY E+E+ P+ VLHIQ Sbjct: 169 NNRTVKCGDYFQDEDGPREFGNISLTTKWIKTTDTSLMLRNLEVNYKETEDQPMSVLHIQ 228 Query: 548 YPEWPDHGVPRDTLAVREILKRTYNLPLGLGPIVVHCSAGIGRTGTYCTIHNTIQRILGG 727 YPEWPDHGVP+DT+AVREILKR Y +P LGPI+VHCSAGIGRTGTYC IHNTIQRIL G Sbjct: 229 YPEWPDHGVPKDTVAVREILKRLYQVPPSLGPIIVHCSAGIGRTGTYCAIHNTIQRILAG 288 Query: 728 DMSAL 742 DMSAL Sbjct: 289 DMSAL 293 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,752,855 Number of Sequences: 27288 Number of extensions: 407233 Number of successful extensions: 1167 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 1127 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1164 length of database: 11,516,596 effective HSP length: 97 effective length of database: 8,869,660 effective search space used: 1330449000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18264914|gb|BM413284.1|BM413284 EST587611 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG62H12 5' end, mRNA sequence (656 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g53645.1 Expressed protein / ; supported by full-length cD... 228 2e-60 >At1g53645.1 Expressed protein / ; supported by full-length cDNA: Ceres: 41453. Length = 523 Score = 228 bits (582), Expect = 2e-60 Identities = 106/142 (74%), Positives = 124/142 (86%) Frame = +2 Query: 8 TNMMIECEPEYLMGDFESNPDIDETPPIPLRDALEKMKPFLMAYEGIKDQEEWEEVIKET 187 TN+MIECEPEY+M DF SNPDIDE PP+ LR+ LEK+KPF++AYEGIKDQEEWEE I E Sbjct: 382 TNLMIECEPEYIMPDFGSNPDIDEKPPMSLRECLEKVKPFIVAYEGIKDQEEWEEAINEA 441 Query: 188 METVPLMKEIVDYYSGPDRVTAKQQQQELERVAKTLPESAPNSVKRFTERAVLSLQSNPG 367 M PLMKEIVD+YSGPDRVTAK+Q +EL+R+A TLP SAP+SVKRF +RA L+L+SNPG Sbjct: 442 MTQAPLMKEIVDHYSGPDRVTAKKQNEELDRIATTLPASAPDSVKRFADRAALTLKSNPG 501 Query: 368 WGFDKKCQFMDKVVMEVSQHYK 433 WGFDKK QFMDK+V+EVSQ YK Sbjct: 502 WGFDKKYQFMDKLVLEVSQSYK 523 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,663,443 Number of Sequences: 27288 Number of extensions: 322687 Number of successful extensions: 1123 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 1067 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1121 length of database: 11,516,596 effective HSP length: 95 effective length of database: 8,924,236 effective search space used: 1097681028 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18264842|gb|BM413212.1|BM413212 EST587539 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG62J13 5' end, mRNA sequence (785 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g50100.1 putative protein / similar to unknown protein (pi... 244 5e-65 >At5g50100.1 putative protein / similar to unknown protein (pir||S75732);supported by full-length cDNA: Ceres:35710. Length = 214 Score = 244 bits (622), Expect = 5e-65 Identities = 130/220 (59%), Positives = 163/220 (74%), Gaps = 6/220 (2%) Frame = +1 Query: 25 AFRAASSPVFR-RANISLFSLPPYITTKSPYSKFLPNPNPNLLNQHGPRYSIRAISGTT- 198 A AA+S +++ R N SL SL + F PN N ++ G +Y +RAI GT+ Sbjct: 6 AVAAAASTIWKHRRNPSLRSLSRH---------FNPNFNHRIIPT-GFKYQVRAIQGTST 55 Query: 199 ---VAPNKDINEEKSPENWKIKMLYDGECPLCMREVDMLRERNKSYGTIKFLDISSDEYR 369 + P K+ EE P+NWKIKMLYDG+CPLCMREV+ML ERN+ +GTIKF+DISS++Y Sbjct: 56 DPVITPLKN-REEPKPQNWKIKMLYDGDCPLCMREVNMLMERNEKHGTIKFVDISSNDYS 114 Query: 370 PDENEGLDYETVMGRIHAILSDGTVVTDVEAFRRLYEAVGLGWVYAITKYEPIATIADAV 549 P++N+GLDY+TVMG+IHAI SDG VV VEAFRRLYE VGLGWVY ITK+EPI +AD V Sbjct: 115 PEDNQGLDYKTVMGQIHAIQSDGNVVKGVEAFRRLYEEVGLGWVYTITKFEPIGKLADVV 174 Query: 550 YGVWAKYRLQVTGRPSLEEVLKARRK-KEEMCKDSKACKM 666 Y VWAKYRLQVTGRPS+E +L+AR+K K E C +SK CK+ Sbjct: 175 YDVWAKYRLQVTGRPSIEAILEARKKDKVETCGESKNCKI 214 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,773,577 Number of Sequences: 27288 Number of extensions: 409346 Number of successful extensions: 1389 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 1286 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1382 length of database: 11,516,596 effective HSP length: 97 effective length of database: 8,869,660 effective search space used: 1454624240 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18264811|gb|BM413181.1|BM413181 EST587508 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG62D15 5' end, mRNA sequence (741 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g72550.1 putative phenylalanyl-tRNA synthetase beta-subunit; ... 368 e-102 >At1g72550.1 putative phenylalanyl-tRNA synthetase beta-subunit; PheHB / similar to phenylalanyl-tRNA synthetase beta-subunit (PheHB) GB:5032011 [Homo sapiens]; supported by cDNA: gi_17065261 Length = 598 Score = 368 bits (945), Expect = e-102 Identities = 178/244 (72%), Positives = 211/244 (85%) Frame = +3 Query: 3 TYEALPPAEINFVPLKQTKNFRADELMEFYKSDLKLKKFLHIIENSPVYPVIYDCKRTVL 182 TYEALPP +INFVPLKQTK+FRADEL+EFYKSD+KLKKFLHIIENSPV+PV+YD KRTVL Sbjct: 173 TYEALPPTDINFVPLKQTKSFRADELIEFYKSDMKLKKFLHIIENSPVFPVLYDSKRTVL 232 Query: 183 SLPPIINGAHSAISLKTKNVFIECTATDLTKANIVLNTMVTMFSVYCERKFEVEPVKVTY 362 SLPPIINGAHSAI+L+TKNVFIECTATDLTKA IVLNTMVT FS +C RKFE+EPV+VTY Sbjct: 233 SLPPIINGAHSAITLQTKNVFIECTATDLTKAKIVLNTMVTTFSEFCARKFEIEPVEVTY 292 Query: 363 PDGRSYVCPDLSIYNMNVPLSYITGIIGVQLPEDKVASLLHKMQLRAEKSVSEDKEVKFV 542 DG+SY+ PDL++Y+M VPLS+IT IGV L ++V SLL +MQL+AE++ S D + Sbjct: 293 DDGKSYIYPDLAVYDMEVPLSFITDSIGVSLKVEQVTSLLTRMQLQAEQAKSSDNQCAIK 352 Query: 543 VSVPPTRSDVLHPCDVTEDVAIAYGYHEIPKRKPASLNPLPLSQFSDLIRTEIAMTGYTE 722 V VPP+RSDVLHPCDV EDVAIAYG++ IP RKPAS+ PL L++ +DL+R EIAM YTE Sbjct: 353 VHVPPSRSDVLHPCDVMEDVAIAYGFNNIPTRKPASIKPLTLNELTDLLRIEIAMCVYTE 412 Query: 723 VLTW 734 V+TW Sbjct: 413 VVTW 416 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,451,579 Number of Sequences: 27288 Number of extensions: 364863 Number of successful extensions: 1098 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 1053 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1098 length of database: 11,516,596 effective HSP length: 97 effective length of database: 8,869,660 effective search space used: 1321579340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18264791|gb|BM413161.1|BM413161 EST587488 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG62O16 5' end, mRNA sequence (702 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g56040.1 putative protein / predicted protein, Arabidopsis... 243 9e-65 >At3g56040.1 putative protein / predicted protein, Arabidopsis thaliana; supported by cDNA: gi_14596046_gb_AY042811.1_ Length = 883 Score = 243 bits (619), Expect = 9e-65 Identities = 104/178 (58%), Positives = 146/178 (81%) Frame = +2 Query: 2 LGPLWEVIRQKFYRGSISKGSELLIEVAEFLWRDVQLDGSLIILAENVLGSPRIDENGET 181 LGPLWEV RQKF GSIS SEL +E+AEF W +VQ+DGSLI+ AEN +GS ++NGE Sbjct: 703 LGPLWEVSRQKFKGGSISSCSELQLEIAEFSWNNVQVDGSLIVTAENAMGSTTPNDNGEP 762 Query: 182 VLHYGKRCGRCKLENVKILNDGIDWNARENLYWKHDVQRFEAVKVILHGNAEFEAVDVIL 361 +L YG RCG+CKL NV ++N GIDWN++ N+YW++DV R E K+ILHGNAEFEA +V + Sbjct: 763 ILQYGLRCGKCKLHNVNVVNRGIDWNSKSNVYWRNDVNRLETCKIILHGNAEFEASNVTI 822 Query: 362 QGNHVFEVPDGYKMKITTGDSGLAVELKPIENKLMESGSWFWNYKIMGNHVQLELVEL 535 +G+HVFEVPDG+K+KIT+G++GL++ L+ ++ ++ME+GSW+WNY++ G+H+ L+ VE+ Sbjct: 823 EGHHVFEVPDGHKLKITSGNAGLSINLEALKEEVMETGSWYWNYQLNGSHIHLQQVEV 880 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,757,748 Number of Sequences: 27288 Number of extensions: 354989 Number of successful extensions: 1105 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 1043 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1104 length of database: 11,516,596 effective HSP length: 96 effective length of database: 8,896,948 effective search space used: 1218881876 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18264727|gb|BM413097.1|BM413097 EST587424 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG62A18 5' end, mRNA sequence (807 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g46450.1 SEC14 cytosolic factor, putative / supported by c... 270 5e-73 At4g36640.1 putative protein / 58 5e-09 At3g24840.1 phosphatidylinositol transfer protein, putative / ... 58 7e-09 At4g39180.1 SEC14 - like protein / phosphatidylinositol-phosp... 57 9e-09 At4g08690.1 putative phosphoglyceride transfer protein / simi... 57 2e-08 At4g36490.1 expressed protein / ; supported by cDNA: gi_15215... 56 2e-08 At5g47510.1 SEC14 cytosolic factor, putative / contains simil... 56 2e-08 At2g21540.1 putative phosphatidylinositol phophatidylcholine tra... 56 3e-08 At1g75170.1 unknown protein / ; supported by cDNA: gi_17979168 55 3e-08 At1g75370.1 sec14 cytosolic factor, putative / similar to SP:... 54 8e-08 At2g18180.1 putative phosphatidylinositol/phophatidylcholine tra... 54 1e-07 At2g21520.1 putative phosphatidylinositol/phosphatidylcholine tr... 53 2e-07 At1g22180.1 hypothetical protein / contains Pfam profile: PF0... 52 3e-07 At1g19650.1 sec14 cytosolic factor, putative / similar to SP:... 51 6e-07 At4g34580.1 putative protein / SEC14 protein, Saccharomyces c... 50 2e-06 At5g56160.1 putative protein / contains similarity to phospha... 49 2e-06 >At3g46450.1 SEC14 cytosolic factor, putative / supported by cDNA: gi_20453103 Length = 486 Score = 270 bits (691), Expect = 5e-73 Identities = 124/254 (48%), Positives = 177/254 (68%) Frame = +2 Query: 2 SDQSSSTGETTPNDFHHSQAYPQARSHDEVQDDGYPQRWLLELHKELREESISVPERLND 181 ++ +S+ + +D Q+ R DE Q WL +L++EL ++ +S+PERLN+ Sbjct: 145 TNSHASSESESQSDSQTLQSPSDIRIEDEAPLPVISQDWLRKLYEELEKQRLSLPERLNE 204 Query: 182 DELRQFYAAANGDFARLLSSVKKTIKWRQNYTFLSPEELKAWSPFIFWHGHDANQRPCLI 361 DEL +FY +NGDF LLSS+KKTI WR+ Y LS EEL+ WS +FWHG+D NQRPCLI Sbjct: 205 DELHRFYRVSNGDFTSLLSSIKKTIHWRETYRILSEEELETWSSLLFWHGYDKNQRPCLI 264 Query: 362 IRLGLACSNLRSNGKSLLIKAVVSQIEHGILRMVNVEHPQITVLMDCEGLSPFGFPIHMM 541 +RLGLA L S+ + +A++SQ+EHG+L ++ E+ ++TVL+DCEGLSP P+ MM Sbjct: 265 VRLGLAFLKLPSHERPRFAQAIISQVEHGVLHLLTPENSELTVLVDCEGLSPLRIPMQMM 324 Query: 542 RSCAMLLQDHYPNRLSSLIIVRLPQVAQIIMQTFFQVLKPSTRQKVRIIGRNHLEFLSNH 721 RSC+ +LQDH+PNRL L I+RLP V ++I QTF Q+L+P+TR+K+RI G LS + Sbjct: 325 RSCSSILQDHFPNRLGCLFIIRLPPVVRVISQTFIQILRPTTRKKLRIEGETFHRVLSEY 384 Query: 722 LNSIPPFLGGNCSC 763 L ++P +LG NC+C Sbjct: 385 LQTLPSYLGSNCNC 398 >At4g36640.1 putative protein / Length = 294 Score = 58.2 bits (139), Expect = 5e-09 Identities = 60/260 (23%), Positives = 110/260 (42%), Gaps = 16/260 (6%) Frame = +2 Query: 62 YPQARSHDEVQDDGYPQRWLLELHKELREESISVPERLNDDELRQFYAAANGDFARLLSS 241 + + +H DD + EL + S +D LR+F A N D + Sbjct: 2 FRRRNAHQLDNDDSQQDNKVRELKSAIGPLSGHSLVFCSDASLRRFLDARNWDVEKAKKM 61 Query: 242 VKKTIKWRQNYTFLSPEELKAWSPFIFWHG----------HDANQRPCLIIRLGLACSNL 391 +++T+KWR Y P+E++ W+ + G HD R LI+R + S Sbjct: 62 IQETLKWRSTY---KPQEIR-WNQ-VAHEGETGKASRASFHDRQGRVVLIMRPAMQNSTS 116 Query: 392 RSNGKSLLIKAVVSQIEHGILRMVNVEHPQITVLMDCEGLS-PFGFPIHMMRSCAMLLQD 568 + I+ +V +E+ I+ + + Q++ L+D G S P+ R +LQ+ Sbjct: 117 QEGN----IRHLVYLLENAIINLPKGQ-KQMSWLIDFTGWSMAVNPPMKTTREIIHILQN 171 Query: 569 HYPNRLSSLIIVRLPQVAQIIMQTFFQVLKPSTRQKVRII---GRNHLEFLSNH--LNSI 733 +YP RL + P++ Q + + L P T +KV+ + + E ++ H + ++ Sbjct: 172 YYPERLGIAFLYNPPRLFQAVYRAAKYFLDPRTAEKVKFVYPKDKASDELMTTHFDVENL 231 Query: 734 PPFLGGNCSCSNAQTDGCRK 793 P GG + D R+ Sbjct: 232 PKEFGGEATLEYDHEDFSRQ 251 >At3g24840.1 phosphatidylinositol transfer protein, putative / similar to SEC14 CYTOSOLIC FACTOR (PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN) GB:P46250 from [Candida albicans] (Yeast (1996) 12(11), 1097-1105) Length = 535 Score = 57.8 bits (138), Expect = 7e-09 Identities = 56/241 (23%), Positives = 101/241 (41%), Gaps = 30/241 (12%) Frame = +2 Query: 161 VPERLND-DELRQFYAAANGDFARLLSSVKKTIKWR---------QNYTFLSPEELKAWS 310 +P R +D + +F A D + + ++ +KWR Q++ + EE++ + Sbjct: 99 LPPRHDDYHTMLRFLKARRFDLEKTVQMWEEMLKWRKENGVDTIIQDFVYDEYEEVQQYY 158 Query: 311 PFIFWHGHDANQRPCLIIRLGLACSNLRSNGKSLLIKAVVSQIEH---GILRMVNVEHP- 478 P + HG D RP I RLG GK + + + + + G + + + P Sbjct: 159 PHGY-HGVDREGRPVYIERLGKI-----DPGKLMKVTTLERFLRYHVQGFEKTFSEKFPA 212 Query: 479 ----------QITVLMDCEGLSPFGFPIHMMRSCAMLLQ----DHYPNRLSSLIIVRLPQ 616 T ++D G+S F + + M +Q D+YP L+ + I+ Sbjct: 213 CSIAAKRHINSSTTIIDVHGVSWMSFR-KLAQDLVMRMQKIDGDNYPETLNQMYIINAGN 271 Query: 617 VAQIIMQTFFQVLKPSTRQKVRIIGRNHLEFLSNHL--NSIPPFLGGNCSCSNAQTDGCR 790 +++ T L P T K+ ++G + L + + +P FLGGNC C A GC Sbjct: 272 GFKLVWNTVKGFLDPKTTSKIHVLGNKYRSHLLEIIDPSELPEFLGGNCKC--AHEGGCM 329 Query: 791 K 793 + Sbjct: 330 R 330 >At4g39180.1 SEC14 - like protein / phosphatidylinositol-phosphatidylcholine transfer protein SEC14, Yarrowia lipolytica, PIR2:S43745 Length = 550 Score = 57.4 bits (137), Expect = 9e-09 Identities = 58/241 (24%), Positives = 98/241 (40%), Gaps = 30/241 (12%) Frame = +2 Query: 161 VPERLNDDELR-QFYAAANGDFARLLSSVKKTIKWRQNY---------TFLSPEELKAWS 310 +P + +D + +F A D + + WR+ Y F EE+ + Sbjct: 87 LPSKHDDHHMMLRFLRARKFDLEKAKQMWSDMLNWRKEYGADTIMEDFDFKEIEEVVKYY 146 Query: 311 PFIFWHGHDANQRPCLIIRLGL--ACSNLRSNGKSLLIKAVVSQIEHGILRMVNVEHP-- 478 P + HG D RP I RLG A ++ +K V + E + NV+ P Sbjct: 147 PQGY-HGVDKEGRPIYIERLGQVDATKLMKVTTIDRYVKYHVKEFE----KTFNVKFPAC 201 Query: 479 ---------QITVLMDCEGLSPFGF---PIHMMRSCAMLLQDHYPNRLSSLIIVRLPQVA 622 Q T ++D +G+ F +++S + D+YP L+ + I+ Sbjct: 202 SIAAKRHIDQSTTILDVQGVGLSNFNKAAKDLLQSIQKIDNDNYPETLNRMFIINAGCGF 261 Query: 623 QIIMQTFFQVLKPSTRQKVRIIGRNH----LEFLSNHLNSIPPFLGGNCSCSNAQTDGCR 790 +++ T L P T K+ ++G + LE + N +P FLGG C+C A GC Sbjct: 262 RLLWNTVKSFLDPKTTAKIHVLGNKYQTKLLEIID--ANELPEFLGGKCTC--ADKGGCM 317 Query: 791 K 793 + Sbjct: 318 R 318 >At4g08690.1 putative phosphoglyceride transfer protein / similar to SEC14-like protein of D. discoideum, GenBank accession number U82515 Length = 301 Score = 56.6 bits (135), Expect = 2e-08 Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 10/195 (5%) Frame = +2 Query: 134 KELREESISVPERLN----DDELRQFYAAANGDFARLLSSVKKTIKWRQNYTFLSPEELK 301 +E+R+ +PE+L+ DD + ++ A N + +K+T+KWR Y PEE+ Sbjct: 24 EEVRKLLGPLPEKLSSFCSDDAVLRYLRARNWHVKKATKMLKETLKWRVQY---KPEEI- 79 Query: 302 AWSPFIFWHGHDANQRPCLIIRLGLACSNLRSNGKSLLIKAVVSQIEHGILRMVNVEH-- 475 W R + +LG +R + ++ K+V QI + + M N Sbjct: 80 CWEEVAGEAETGKIYRSSCVDKLGRPVLIMRPSVENS--KSVKGQIRYLVYCMENAVQNL 137 Query: 476 ----PQITVLMDCEGLSPFGFPIHMMRSCAMLLQDHYPNRLSSLIIVRLPQVAQIIMQTF 643 Q+ ++D G S + + A +LQ+HYP RL+ ++ P+ + + Sbjct: 138 PPGEEQMVWMIDFHGYSLANVSLRTTKETAHVLQEHYPERLAFAVLYNPPKFFEPFWKVA 197 Query: 644 FQVLKPSTRQKVRII 688 L+P TR KV+ + Sbjct: 198 RPFLEPKTRNKVKFV 212 >At4g36490.1 expressed protein / ; supported by cDNA: gi_15215779_gb_AY050419.1_ Length = 543 Score = 56.2 bits (134), Expect = 2e-08 Identities = 57/242 (23%), Positives = 101/242 (41%), Gaps = 31/242 (12%) Frame = +2 Query: 161 VPERLNDDELR-QFYAAANGDFARLLSSVKKTIKWRQNY---TFLSPEELKAWSPFIFW- 325 +PE+ +D + +F A D + + ++WR+ + T + + K + + Sbjct: 69 LPEKHDDYHMMLRFLKARKFDLEKTKQMWTEMLRWRKEFGADTVMEEFDFKEIDEVLKYY 128 Query: 326 ----HGHDANQRPCLIIRLGLACSNLRSNGKSLLIKAVVSQIEHGIL---RMVNVEHP-- 478 HG D RP I RLGL S K + + + + + ++ R NV+ P Sbjct: 129 PQGHHGVDKEGRPVYIERLGLVDST-----KLMQVTTMDRYVNYHVMEFERTFNVKFPAC 183 Query: 479 ---------QITVLMDCEGLSPFGFPIHMMRSCAMLLQ----DHYPNRLSSLIIVRLPQV 619 Q T ++D +G+ F R LQ D+YP L+ + I+ Sbjct: 184 SIAAKKHIDQSTTILDVQGVGLKNFN-KAARDLITRLQKVDGDNYPETLNRMFIINAGSG 242 Query: 620 AQIIMQTFFQVLKPSTRQKVRIIGRNH----LEFLSNHLNSIPPFLGGNCSCSNAQTDGC 787 +++ T L P T K+ ++G + LE + + +P FLGG+C+C A GC Sbjct: 243 FRMLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDE--SELPEFLGGSCTC--ADNGGC 298 Query: 788 RK 793 + Sbjct: 299 MR 300 >At5g47510.1 SEC14 cytosolic factor, putative / contains similarity to phosphatidylinositol/phosphatidylcholine transfer protein Length = 403 Score = 56.2 bits (134), Expect = 2e-08 Identities = 65/248 (26%), Positives = 107/248 (42%), Gaps = 29/248 (11%) Frame = +2 Query: 113 RWLLELHKELREESISVPERLND-DELRQFYAAANGDFARLLSSVKKTIKWR-------- 265 R LL LH L P++ D + LR+F + D + + +KWR Sbjct: 32 RNLLLLHGHL-------PDKHGDHNTLRRFLKMRDFDLEKSKEAFLNYMKWRVDYKVDLI 84 Query: 266 -QNYTFLSPEELKAWSPFIFWHGHDANQRPCLIIRLGLACSNLRSNGKSLLIKAVVSQIE 442 Q + F E+K P F H D RP I RLG+ ++L + K+ I+ V+ Sbjct: 85 SQKFKFEEYGEVKKHYPHGF-HKVDKTGRPIYIERLGM--TDLNAFLKATTIERYVNYHI 141 Query: 443 HGILRMVNVEHPQITVLMDCE-------------GLSPFGFPIHMMRSCAMLLQ----DH 571 + +++ +P ++ D G+S F P RS M +Q ++ Sbjct: 142 KEQEKTMSLRYPACSIASDKHVSSTTTILDVSGVGMSNFSKPA---RSLFMEIQKIDSNY 198 Query: 572 YPNRLSSLIIVRLPQVAQIIMQTFFQVLKPSTRQKVRIIGRNHLEFLSNHL--NSIPPFL 745 YP L L +V +++ L T KV+++G N+L L + +++P FL Sbjct: 199 YPETLHRLFVVNASSGFRMLWLALKTFLDARTLAKVQVLGPNYLGELLEAIEPSNLPTFL 258 Query: 746 GGNCSCSN 769 GGNC+CS+ Sbjct: 259 GGNCTCSD 266 >At2g21540.1 putative phosphatidylinositol phophatidylcholine transfer protein / ; supported by cDNA: gi_16209641_gb_AY057587.1_ Length = 548 Score = 55.8 bits (133), Expect = 3e-08 Identities = 56/241 (23%), Positives = 101/241 (41%), Gaps = 30/241 (12%) Frame = +2 Query: 161 VPERLNDDELR-QFYAAANGDFARLLSSVKKTIKWR---------QNYTFLSPEELKAWS 310 +P + +D + +F A D + I WR +++ F +E+ + Sbjct: 86 LPSKHDDHHMMLRFLRARKFDLEKAKQMWTDMIHWRKEFGVDTIMEDFDFKEIDEVLKYY 145 Query: 311 PFIFWHGHDANQRPCLIIRLGL--ACSNLRSNGKSLLIKAVVSQIEHGILRMVNVEHP-- 478 P + HG D + RP I RLG A ++ +K V + E + N++ P Sbjct: 146 PQGY-HGVDKDGRPVYIERLGQVDATKLMQVTTIDRYVKYHVREFE----KTFNIKLPAC 200 Query: 479 ---------QITVLMDCEGLSPFGFPI---HMMRSCAMLLQDHYPNRLSSLIIVRLPQVA 622 Q T ++D +G+ F +++ + D+YP L+ + I+ Sbjct: 201 SIAAKKHIDQSTTILDVQGVGLKSFSKAARDLLQRIQKIDSDNYPETLNRMFIINAGSGF 260 Query: 623 QIIMQTFFQVLKPSTRQKVRIIGRNH----LEFLSNHLNSIPPFLGGNCSCSNAQTDGCR 790 +++ T L P T K+ ++G + LE + + N +P FLGGNC+C A GC Sbjct: 261 RLLWSTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDS--NELPEFLGGNCTC--ADKGGCM 316 Query: 791 K 793 + Sbjct: 317 R 317 >At1g75170.1 unknown protein / ; supported by cDNA: gi_17979168 Length = 296 Score = 55.5 bits (132), Expect = 3e-08 Identities = 55/209 (26%), Positives = 98/209 (46%), Gaps = 17/209 (8%) Frame = +2 Query: 176 NDDELRQFYAAANGDFARLLSSVKKTIKWRQNYTFLSPEELKAWSPF--------IFWHG 331 +D L+++ A N + + +++T+KWR ++ PEE++ W+ ++ G Sbjct: 43 SDACLKRYLEARNWNVGKAKKMLEETLKWRSSF---KPEEIR-WNEVSGEGETGKVYKAG 98 Query: 332 -HDANQRPCLIIRLGLACSNLRSNGKSL--LIKAVVSQIEHGILRMVNVEHPQITVLMDC 502 HD + R LI+R GL N KSL +K +V IE+ IL + + Q++ L+D Sbjct: 99 FHDRHGRTVLILRPGL------QNTKSLENQMKHLVYLIENAILNLPE-DQEQMSWLIDF 151 Query: 503 EGLS-PFGFPIHMMRSCAMLLQDHYPNRLSSLIIVRLPQVAQIIMQTFFQVLKPSTRQKV 679 G S PI R +LQ+HYP RL+ + P++ + + + T KV Sbjct: 152 TGWSMSTSVPIKSARETINILQNHYPERLAVAFLYNPPRLFEAFWKIVKYFIDAKTFVKV 211 Query: 680 RII---GRNHLEFLSNHLN--SIPPFLGG 751 + + +E +S + ++P GG Sbjct: 212 KFVYPKNSESVELMSTFFDEENLPTEFGG 240 >At1g75370.1 sec14 cytosolic factor, putative / similar to SP:P24859 from [Kluyveromyces lactis] Length = 530 Score = 54.3 bits (129), Expect = 8e-08 Identities = 56/231 (24%), Positives = 95/231 (40%), Gaps = 31/231 (13%) Frame = +2 Query: 194 QFYAAANGDFARLLSSVKKTIKWR---------QNYTFLSPEELKAWSPFIFWHGHDANQ 346 +F A D + IKWR +++ F +E+ + P + HG D Sbjct: 3 RFLKARKFDIGKTKLMWSNMIKWRKDFGTDTIFEDFEFEEFDEVLKYYPHGY-HGVDKEG 61 Query: 347 RPCLIIRLGLACSNLRSNGKSLLIKAVVSQIEHGIL---RMVNVEHPQI----------- 484 RP I RLGL K + + V I + + + VN++ P Sbjct: 62 RPVYIERLGLV-----DPAKLMQVTTVERFIRYHVREFEKTVNIKLPACCIAAKRHIDSS 116 Query: 485 TVLMDCEGLSPFGFPIHMMRSCAMLLQ------DHYPNRLSSLIIVRLPQVAQIIMQTFF 646 T ++D +G+ GF + +++Q D+YP L + I+ +++ T Sbjct: 117 TTILDVQGV---GFKNFSKPARDLIIQLQKIDNDNYPETLHRMFIINGGSGFKLVWATVK 173 Query: 647 QVLKPSTRQKVRIIGRNHLEFLSNHLNS--IPPFLGGNCSCSNAQTDGCRK 793 Q L P T K+ +IG + L +++ +P FLGG C+C A GC + Sbjct: 174 QFLDPKTVTKIHVIGNKYQNKLLEIIDASQLPDFLGGTCTC--ADRGGCMR 222 >At2g18180.1 putative phosphatidylinositol/phophatidylcholine transfer protein / Length = 558 Score = 53.5 bits (127), Expect = 1e-07 Identities = 55/240 (22%), Positives = 99/240 (40%), Gaps = 29/240 (12%) Frame = +2 Query: 161 VPERLNDDELR-QFYAAANGDFARLLSSVKKTIKWRQNY---TFLSPEELKAWSPFIFW- 325 +P++ +D + +F A D + ++WR+ + T + E K + + Sbjct: 72 LPDKHDDYHMMLRFLKARKFDLEKTNQMWSDMLRWRKEFGADTVMEDFEFKEIDEVLKYY 131 Query: 326 ----HGHDANQRPCLIIRLGLACSNLRSNGKSLLIKAVVSQIEHGIL---RMVNVEHP-- 478 HG D RP I RLG S K + + + + + ++ R NV+ P Sbjct: 132 PQGHHGVDKEGRPVYIERLGQVDST-----KLMQVTTMDRYVNYHVMEFERTFNVKFPAC 186 Query: 479 ---------QITVLMDCEGLSPFGFPIHMMRSCAMLLQ----DHYPNRLSSLIIVRLPQV 619 Q T ++D +G+ F R LQ D+YP L+ + I+ Sbjct: 187 SIAAKKHIDQSTTILDVQGVGLKNFN-KAARDLITRLQKVDGDNYPETLNRMFIINAGSG 245 Query: 620 AQIIMQTFFQVLKPSTRQKVRIIGRNHLEFLSNHLNS--IPPFLGGNCSCSNAQTDGCRK 793 +++ T L P T K+ ++G + L +++ +P FLGG+C+C A GC + Sbjct: 246 FRMLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDASELPEFLGGSCTC--ADNGGCMR 303 >At2g21520.1 putative phosphatidylinositol/phosphatidylcholine transfer protein / Length = 531 Score = 53.1 bits (126), Expect = 2e-07 Identities = 57/238 (23%), Positives = 94/238 (38%), Gaps = 29/238 (12%) Frame = +2 Query: 161 VPERLNDDELR-QFYAAANGDFARLLSSVKKTIKWR---------QNYTFLSPEELKAWS 310 +P+R +D + +F A D + I+WR Q++ F E+ Sbjct: 5 LPDRHDDYHMMLRFLKARKFDVEKAKQMWADMIQWRKEFGTDTIIQDFDFEEINEVLKHY 64 Query: 311 PFIFWHGHDANQRPCLIIRLGLACSN--LRSNGKSLLIKAVVSQIEHGILRMVNVEHPQI 484 P + HG D RP I RLG N ++ ++ V + E + ++ P Sbjct: 65 PQCY-HGVDKEGRPIYIERLGKVDPNRLMQVTSMDRYVRYHVKEFERSFM----IKFPSC 119 Query: 485 TV-----------LMDCEGLSPFGFPIHMMRSCAMLLQ----DHYPNRLSSLIIVRLPQV 619 T+ ++D +G+ F R LQ D+YP L + I+ Sbjct: 120 TISAKRHIDSSTTILDVQGVGLKNFN-KSARDLITRLQKIDGDNYPETLHQMFIINAGPG 178 Query: 620 AQIIMQTFFQVLKPSTRQKVRIIGRNHLEFLSN--HLNSIPPFLGGNCSCSNAQTDGC 787 +++ T L P T K+ ++G +L L +N +P FLGG C+C A GC Sbjct: 179 FRLLWNTVKSFLDPKTSAKIHVLGYKYLSKLLEVIDVNELPEFLGGACTC--ADQGGC 234 >At1g22180.1 hypothetical protein / contains Pfam profile: PF00650 CRAL/TRIO domain; supported by cDNA: gi_18253034 Length = 249 Score = 52.4 bits (124), Expect = 3e-07 Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 7/156 (4%) Frame = +2 Query: 242 VKKTIKWRQNYTFLSPEELKAWSPFI-------FWHGHDANQRPCLIIRLGLACSNLRSN 400 +K+T+KWR Y PEE++ W + + ++ ++ + +C N +S Sbjct: 2 LKETLKWRAQY---KPEEIR-WEEIAREAETGKIYRANCTDKYGRTVLVMRPSCQNTKSY 57 Query: 401 GKSLLIKAVVSQIEHGILRMVNVEHPQITVLMDCEGLSPFGFPIHMMRSCAMLLQDHYPN 580 I+ +V +E+ IL + + + Q+ L+D G + + + R A +LQ+HYP Sbjct: 58 KGQ--IRILVYCMENAILNLPDNQE-QMVWLIDFHGFNMSHISLKVSRETAHVLQEHYPE 114 Query: 581 RLSSLIIVRLPQVAQIIMQTFFQVLKPSTRQKVRII 688 RL I+ P++ + + L+P T KV+ + Sbjct: 115 RLGLAIVYNPPKIFESFYKMVKPFLEPKTSNKVKFV 150 >At1g19650.1 sec14 cytosolic factor, putative / similar to SP:P24859 from [Kluyveromyces lactis]; supported by cDNA: gi_15810424_gb_AY056251.1_ Length = 608 Score = 51.2 bits (121), Expect = 6e-07 Identities = 65/292 (22%), Positives = 117/292 (39%), Gaps = 36/292 (12%) Frame = +2 Query: 26 ETTPNDFHHSQAYPQARSHDEVQD-------DGYPQRWLLELHKELREESISVPERLNDD 184 +++ + F HS +RS D D R++ E + L + + +P L+D Sbjct: 44 KSSKSKFRHSLKRRGSRSIDRTLSLTFEDIHDAEELRYVSEFRQSLISDHL-LPPNLDDY 102 Query: 185 ELR-QFYAAANGDFARLLSSVKKTIKWR---------QNYTFLSPEELKAWSPFIFWHGH 334 + +F A D + I+WR +++ F +E+ + P + HG Sbjct: 103 HIMLRFLFARKFDLGKAKLMWTNMIQWRRDFGTDTILEDFEFPELDEVLRYYPQGY-HGV 161 Query: 335 DANQRPCLIIRLGLACSNLRSNGKSL--LIKAVVSQIEHGILRMVNVEHPQI-------- 484 D RP I RLG ++ +L ++ V + E + + V+ P Sbjct: 162 DKEGRPVYIERLGKVDASKLMQVTTLERYLRYHVKEFE----KTITVKFPACCIAAKRHI 217 Query: 485 ---TVLMDCEGLSPFGFPIHMMRSCAMLLQ----DHYPNRLSSLIIVRLPQVAQIIMQTF 643 T ++D +GL F R + LQ D+YP L + I+ +++ T Sbjct: 218 DSSTTILDVQGLGLKNFT-KTARDLIIQLQKIDSDNYPETLHRMFIINAGSGFKLLWGTV 276 Query: 644 FQVLKPSTRQKVRIIGRNHLEFLSNHLNS--IPPFLGGNCSCSNAQTDGCRK 793 L P T K+ ++G + L +++ +P F GG C+C A GC + Sbjct: 277 KSFLDPKTVSKIHVLGNKYQNKLLEMIDASQLPDFFGGTCTC--ADQGGCMR 326 >At4g34580.1 putative protein / SEC14 protein, Saccharomyces cerevisiae, PIR2:A30106 Length = 560 Score = 49.7 bits (117), Expect = 2e-06 Identities = 51/235 (21%), Positives = 95/235 (39%), Gaps = 24/235 (10%) Frame = +2 Query: 161 VPERLNDDELR-QFYAAANGDFARLLSSVKKTIKWR---------QNYTFLSPEELKAWS 310 +P +L+D + +F A D + I+WR +++ F +E+ Sbjct: 79 LPSKLDDLHMMLRFLRARKFDIEKAKQMWSDMIQWRKDFGADTIIEDFDFEEIDEVMKHY 138 Query: 311 PFIFWHGHDANQRPCLIIRLGLACSN--LRSNGKSLLIKAVVSQIEH-------GILRMV 463 P + HG D RP I RLG +N L+ +K V + E Sbjct: 139 PQGY-HGVDKEGRPVYIERLGQIDANKLLQVTTMDRYVKYHVKEFEKTFKVKFPSCSVAA 197 Query: 464 NVEHPQITVLMDCEGLSPFGFPI---HMMRSCAMLLQDHYPNRLSSLIIVRLPQVAQIIM 634 N Q T ++D +G+ F +++ + ++YP L+ + I+ +++ Sbjct: 198 NKHIDQSTTILDVQGVGLKNFSKSARELLQRLCKIDNENYPETLNRMFIINAGSGFRLLW 257 Query: 635 QTFFQVLKPSTRQKVRIIGRNHLEFLSNHLNS--IPPFLGGNCSCSNAQTDGCRK 793 T L P T K+ ++G + L +++ +P F GG C+C + GC + Sbjct: 258 STVKSFLDPKTTAKIHVLGNKYHSKLLEVIDASELPEFFGGACTCED--KGGCMR 310 >At5g56160.1 putative protein / contains similarity to phosphatidylinositol/phosphatidylcholine transfer protein Length = 592 Score = 49.3 bits (116), Expect = 2e-06 Identities = 56/262 (21%), Positives = 114/262 (43%), Gaps = 33/262 (12%) Frame = +2 Query: 83 DEVQDDGYPQRWLLELHKELREESISVPERLNDDELRQFYAAANGDFARLLSSVKKTIKW 262 ++V+D+ ++ + +L ++L ++ + P + L +F + +++ ++ +KW Sbjct: 76 EDVRDEK-EEKLVSKLRQQLLQKDLLPPVHDDYHMLLRFLKTMEFKIEKTVTAWEEMLKW 134 Query: 263 R---------QNYTFLSPEELKAWSPFIFWHGHDANQRPCLIIRLGLACSNLRSNGKSLL 415 R Q++ F +E+ P + HG D + RP I RLG A GK + Sbjct: 135 RKEFGTDRIIQDFNFKELDEVTRHYPQGY-HGVDKDGRPIYIERLGKA-----HPGKLME 188 Query: 416 IKAVVSQIEHGILRMVNVEHPQI--------------TVLMDCEGLSPFGFP---IHMMR 544 + + +++ + ++ T ++D EGL F +++ Sbjct: 189 VTTIERYLKYHVQEFERTLQEKLPACSVAAKRRVTTTTTILDVEGLGMKNFTPTAANLLA 248 Query: 545 SCAMLLQDHYPNRLSSLIIVRLPQVAQIIMQTFF-----QVLKPSTRQKVRIIGRNHLEF 709 + A + ++YP L + IV A I ++F ++L P T K++++ L Sbjct: 249 TIAKVDCNYYPETLHRMFIVN----AGIGFRSFLWPAAQKLLDPMTIAKIQVLEPRSLSK 304 Query: 710 LSNHLNS--IPPFLGGNCSCSN 769 L ++S +P FLGG C C N Sbjct: 305 LLEAIDSSQLPEFLGGLCKCPN 326 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,227,801 Number of Sequences: 27288 Number of extensions: 407399 Number of successful extensions: 1199 Number of sequences better than 1.0e-05: 32 Number of HSP's better than 0.0 without gapping: 1125 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1175 length of database: 11,516,596 effective HSP length: 98 effective length of database: 8,842,372 effective search space used: 1503203240 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18264702|gb|BM413072.1|BM413072 EST587399 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG62K15 5' end, mRNA sequence (775 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g08640.1 expressed protein / ;supported by full-length cDN... 246 1e-66 >At1g08640.1 expressed protein / ;supported by full-length cDNA: Ceres:35718. Length = 294 Score = 246 bits (629), Expect(2) = 1e-66 Identities = 121/191 (63%), Positives = 149/191 (77%), Gaps = 2/191 (1%) Frame = +1 Query: 178 YIRFSVKSRLNKRMVC-AAASAAGSSSSSDDSNPYEVLGVNPIEGFDMVKAAYARRRKDA 354 ++R + L R+V AA+SAAG+ S D NPYEVLGVNPIEGFD +K Y R+ KDA Sbjct: 42 FVRLPLGKVLQSRIVIRAASSAAGNPQSDADFNPYEVLGVNPIEGFDKIKQTYGRKLKDA 101 Query: 355 ERRGDEATLAQLEKAYDKIMMSQLTKRKQGVTFGSFKVSKEVRYADKQPILPWGPRFTKS 534 +R GDEAT A LEKAYDK+M +QL RK+GVTFGSFKVSK+++YADKQPI+PWGPRF++S Sbjct: 102 QRSGDEATAALLEKAYDKLMYAQLMNRKKGVTFGSFKVSKDIKYADKQPIIPWGPRFSRS 161 Query: 535 DDKDIKINLAISAVFIAWVFINRNAEWKPLQFLAFAFVYRIFEKLKAFE-PPTPTFTEEG 711 D+ INLAIS VF AW+ I RN E+KPLQF++F FVYRIFEKLK+FE P +P + EEG Sbjct: 162 SKNDMLINLAISVVFSAWIAIKRNVEYKPLQFMSFVFVYRIFEKLKSFEAPSSPIYNEEG 221 Query: 712 EDEGTMMRMGK 744 E+ G +RMGK Sbjct: 222 EESGRGLRMGK 232 Score = 24.6 bits (52), Expect(2) = 1e-66 Identities = 11/12 (91%), Positives = 12/12 (99%) Frame = +3 Query: 738 GKRLLRSLALVF 773 GKRLLRSL+LVF Sbjct: 231 GKRLLRSLSLVF 242 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,890,493 Number of Sequences: 27288 Number of extensions: 367036 Number of successful extensions: 1169 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 1118 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1163 length of database: 11,516,596 effective HSP length: 97 effective length of database: 8,869,660 effective search space used: 1419145600 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18264689|gb|BM413059.1|BM413059 EST587386 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG62G23 5' end, mRNA sequence (784 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g01220.1 hypothetical protein / similar to unknown protein... 244 e-100 >At1g01220.1 hypothetical protein / similar to unknown protein GB:AAF32477 GI:6957733 from [Arabidopsis thaliana] Length = 1055 Score = 244 bits (622), Expect(2) = e-100 Identities = 122/159 (76%), Positives = 135/159 (84%) Frame = +3 Query: 3 KIELPVRVDFVGGWSDTPPWSLERAGCVLNMAITLEDSLPIGTVIEIEKGTGIFISDDVG 182 K+ELPVRVDFVGGWSDTPPWSLERAG VLNMAITLE SLPIGT+IE GI I DD G Sbjct: 714 KVELPVRVDFVGGWSDTPPWSLERAGYVLNMAITLEGSLPIGTIIETTNQMGISIQDDAG 773 Query: 183 NQLSIEDLSSIALPFEISDPFRLVKSALLVTSVIHEKILQSVALQIRTWANVPRGSGLGT 362 N+L IED SI PFE++DPFRLVKSALLVT ++ E + S L I+TWANVPRGSGLGT Sbjct: 774 NELHIEDPISIKTPFEVNDPFRLVKSALLVTGIVQENFVDSTGLAIKTWANVPRGSGLGT 833 Query: 363 SSILAAAVVKGLLRITDGDESNENVTRLVLVLEQLMGTG 479 SSILAAAVVKGLL+I++GDESNEN+ RLVLVLEQLMGTG Sbjct: 834 SSILAAAVVKGLLQISNGDESNENIARLVLVLEQLMGTG 872 Score = 139 bits (349), Expect(2) = e-100 Identities = 71/101 (70%), Positives = 80/101 (78%) Frame = +1 Query: 478 GGGWQDQIGGLYAGIKFTASFPGIPLRLQVIPLLASPQLIKELQQRLSCSFHWSSSTCTP 657 GGGWQDQIGGLY GIKFT+SFPGIP+RLQV+PLLASPQLI EL+QRL F Sbjct: 872 GGGWQDQIGGLYPGIKFTSSFPGIPMRLQVVPLLASPQLISELEQRLLVVF-TGQVRLAH 930 Query: 658 GACIRVVTRYLQRDNLLVSSIKRLTELAKIAREAFMSCDID 780 +VVTRYLQRDNLL+SSIKRLTELAK REA M+C++D Sbjct: 931 QVLHKVVTRYLQRDNLLISSIKRLTELAKSGREALMNCEVD 971 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,644,838 Number of Sequences: 27288 Number of extensions: 404472 Number of successful extensions: 1205 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 1143 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1202 length of database: 11,516,596 effective HSP length: 97 effective length of database: 8,869,660 effective search space used: 1445754580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18264667|gb|BM413037.1|BM413037 EST587364 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG62C23 5' end, mRNA sequence (803 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g18420.1 putative protein / non-consensus GC donor splice ... 226 8e-60 >At5g18420.1 putative protein / non-consensus GC donor splice site at exon 1, unknown (C40) protein, Homo sapiens, EMBL:AF103798 Length = 441 Score = 226 bits (577), Expect = 8e-60 Identities = 113/235 (48%), Positives = 162/235 (68%), Gaps = 1/235 (0%) Frame = +2 Query: 26 EESNMLLTMLKAGDHRPFDEIVADFISSFPPHRQFYTCFSLALIL-DEKLLKPAQRLVAF 202 EES ++L++LK+ D RP ++++++F S F R C SL+++L D+++ K +RL+AF Sbjct: 12 EESAIVLSLLKS-DLRPMEDVLSEFDSKFESARYLSVCNSLSMMLQDQQMFKNTERLIAF 70 Query: 203 AILLQVYSSQEPSSNPFISLLVNAACDEGAEQCERAFILQLLSSASSTSSREVLKQSATD 382 I+ Q YSSQ+PS NPF+S +++AAC+E E+ ERAF+L LL S + +E+LK SA D Sbjct: 71 GIIYQCYSSQKPSFNPFLSEMISAACNEQLEKSERAFLLHLLQWNSYNNVKEILKLSAVD 130 Query: 383 YMKMFDTSQLSFPQREQLQQQYGSKALPEEFQCLIGNNSVKNSIPDPDVPRGCDSNSLEF 562 Y++ FD S FP+ +LQ++YG KA P + + S+K + DPDVPRGCD NS EF Sbjct: 131 YIRSFDPSTHDFPELGELQREYGDKADPGPSSHIFADYSLKKLLHDPDVPRGCDPNSPEF 190 Query: 563 DLLPGSKPKIGSGDVDETITGLLSNLSFEGLGPQWIRPHPPRLPVLDGELVWLTP 727 D+ G P+IGSGD DE ++G L NL+ GLGP+WIRP PPR PV EL+W+ P Sbjct: 191 DVQAGVNPRIGSGDRDEALSGFLGNLTMGGLGPRWIRPCPPRYPVHQSELLWIDP 245 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,812,703 Number of Sequences: 27288 Number of extensions: 405211 Number of successful extensions: 1153 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 1106 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1153 length of database: 11,516,596 effective HSP length: 98 effective length of database: 8,842,372 effective search space used: 1494360868 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18264578|gb|BM412948.1|BM412948 EST587275 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG61B12 5' end, mRNA sequence (682 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g50000.1 hypothetical protein / predicted by genemark.hmm 248 2e-66 >At1g50000.1 hypothetical protein / predicted by genemark.hmm Length = 277 Score = 248 bits (634), Expect = 2e-66 Identities = 130/211 (61%), Positives = 160/211 (75%) Frame = +2 Query: 2 LSRSRQTTNSLRAFSSSSSSNQSRGGLPRFYSDKLPPSKDGVVRVKGDEFWHMTRVLRLR 181 L RS T+S ++F++ SSS S L ++ VVRV+G EFWHM +VLRL+ Sbjct: 19 LVRSWLPTSSFKSFATVSSSPPSDLNLR---------NQSRVVRVQGSEFWHMAKVLRLK 69 Query: 182 IHDRVELFDGKGGLVEGCIQNIDQNGLDIVALENPKSVSPHNTQWHVYAAFGTLKGGRAD 361 DRVELF+GKGGLVEGCIQ+ID+ G+D +A E+ K + P QW V+AAFGTLKGGRAD Sbjct: 70 QEDRVELFNGKGGLVEGCIQSIDKTGVDFIAQEDQKVILPQGMQWQVFAAFGTLKGGRAD 129 Query: 362 WLVEKCTELGACSVTPLLTDRSPSISENRVDRLQRVNLAAAKQCQRLHEMVLNPPIKIGG 541 WL+EKCTELGA SVTPLLT+RSP ISENRVDRL+RV+ AAAKQCQRLH+MVLNPPIK G Sbjct: 130 WLIEKCTELGASSVTPLLTERSPIISENRVDRLERVSFAAAKQCQRLHQMVLNPPIKFGT 189 Query: 542 LLPLVKNSKLSFIATAEAKPVFSALSSIKKD 634 LL +SKL +ATAEAKP+ +A++S K+ Sbjct: 190 LL---DHSKLCLVATAEAKPLLNAVNSSAKE 217 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,673,595 Number of Sequences: 27288 Number of extensions: 359587 Number of successful extensions: 1049 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 1004 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1047 length of database: 11,516,596 effective HSP length: 96 effective length of database: 8,896,948 effective search space used: 1156603240 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18264527|gb|BM412897.1|BM412897 EST587224 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG61F3 5' end, mRNA sequence (750 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g01760.1 double-stranded RNA-specific editase, putative / ... 121 1e-48 >At1g01760.1 double-stranded RNA-specific editase, putative / similar to double-stranded RNA-specific editase GB:AAF69673 GI:7770275 from [Danio rerio] Length = 325 Score = 121 bits (304), Expect(3) = 1e-48 Identities = 57/72 (79%), Positives = 62/72 (85%) Frame = +3 Query: 402 SFHLW*PLVFVASIPPEEFQHSETALTTLTCGYSICWNNSGLHEVILGTTGRKQGTSAKG 581 SF L PL FVA +PP EFQHSETA TLTCGYS+CWN SGLHEVILGTTGRKQGTSAKG Sbjct: 254 SFRLNKPLFFVAPVPPSEFQHSETAQATLTCGYSLCWNYSGLHEVILGTTGRKQGTSAKG 313 Query: 582 AMSPSTESSLCK 617 A+ PST+SS+CK Sbjct: 314 ALYPSTQSSICK 325 Score = 58.2 bits (139), Expect(3) = 1e-48 Identities = 27/58 (46%), Positives = 42/58 (71%) Frame = +1 Query: 163 RGALLSYFLEPIYISSVTIGQSHIASKTSIIEDEVMRATYERILPLSNKLMDPFQVNK 336 +GALL L+P+YIS++T+GQS + + D + R+ YERILPLS++L+ F++NK Sbjct: 202 QGALLYQVLQPVYISTITVGQSLHSPDNFSLADHLRRSLYERILPLSDELLTSFRLNK 259 Score = 52.4 bits (124), Expect(3) = 1e-48 Identities = 23/25 (92%), Positives = 24/25 (96%) Frame = +2 Query: 92 VMRKPGRGDTTLSVSCSDKIARWNV 166 V RKPGRG+TTLSVSCSDKIARWNV Sbjct: 174 VQRKPGRGETTLSVSCSDKIARWNV 198 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,574,447 Number of Sequences: 27288 Number of extensions: 406861 Number of successful extensions: 1125 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 1082 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1125 length of database: 11,516,596 effective HSP length: 97 effective length of database: 8,869,660 effective search space used: 1348188320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18264514|gb|BM412884.1|BM412884 EST587211 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG61B15 5' end, mRNA sequence (735 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g46220.1 putative protein / KIAA0776 protein, Homo sapiens... 305 2e-83 >At3g46220.1 putative protein / KIAA0776 protein, Homo sapiens, EMBL:AB018319; supported by cDNA: gi_14334491_gb_AY034937.1_ Length = 530 Score = 305 bits (780), Expect = 2e-83 Identities = 152/228 (66%), Positives = 196/228 (85%), Gaps = 1/228 (0%) Frame = +1 Query: 31 KIKKLLDNLQKKLDESFLNMQLYEKALDLFEDEPSTSVLLHKHLLRTTGTSIVDTLLLNL 210 ++++L+D+LQKKLDESFLNMQLYEKALDLFED+ ST+V+LH+HLLRTT +I DTLL L Sbjct: 267 RMRRLIDDLQKKLDESFLNMQLYEKALDLFEDDQSTAVVLHRHLLRTTAATIADTLLHGL 326 Query: 211 DMLNKLKNGVPVEPQAPES-ILLSPGDRSALAKSLTGSMSAKAIATVEALEGKRVESFMS 387 D+ NK+KNG VE + +LL +R+ALAK+L GS+S KA+A VEALEGKRV++FM Sbjct: 327 DIHNKMKNGTEVEESKTQDLVLLDSSERTALAKNLNGSLSKKALALVEALEGKRVDTFMV 386 Query: 388 ALREVAEESGLALKKLDKKLERTLLHSYRKDLTSQVSAETDPVSLLPQVISLLYVQVHGK 567 R++AEESGL LKKLDKKLERTLLHSYRKDL SQVS E+DP++LL +V+SLL++++H K Sbjct: 387 TFRDLAEESGLVLKKLDKKLERTLLHSYRKDLISQVSTESDPIALLAKVVSLLFIKIHNK 446 Query: 568 ALQAPGRAISAAVSRLKDKLDDSAFKTLVDYQSGTVSVLALMAAATGE 711 ALQAPGRAI+AA+S LK+KLD+SA+KTL DYQ+ TV++LALM+A++GE Sbjct: 447 ALQAPGRAIAAAISHLKEKLDESAYKTLTDYQTATVTLLALMSASSGE 494 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.317 0.133 0.348 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,916,403 Number of Sequences: 27288 Number of extensions: 351185 Number of successful extensions: 1005 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 978 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1002 length of database: 11,516,596 effective HSP length: 97 effective length of database: 8,869,660 effective search space used: 1303840020 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18264458|gb|BM412828.1|BM412828 EST587155 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG61C22 5' end, mRNA sequence (621 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g28200.1 putative protein / hypothetical protein - Schizos... 292 8e-80 >At4g28200.1 putative protein / hypothetical protein - Schizosaccharomyces pombe, PID:e1295810; supported by cDNA: gi_18252168 Length = 648 Score = 292 bits (748), Expect = 8e-80 Identities = 139/212 (65%), Positives = 170/212 (79%), Gaps = 6/212 (2%) Frame = +3 Query: 3 EIYRLATTRFKGDIELWFQYLEFCRERRNGRMKKALAQVIRFHPKVPGVWIYAAAWEFDN 182 EIYRLAT R+KGDI LWF+YLEFC+++R+GRMKKALAQ IRFHPKV GVWIYAA+WEFD Sbjct: 98 EIYRLATMRYKGDINLWFRYLEFCKQKRHGRMKKALAQAIRFHPKVAGVWIYAASWEFDR 157 Query: 183 NLNAAAARALMHSGLRACPTSEDLWVEYLRMELTYLNKLKARKVVLGEDEGTLARSGNSA 362 NLN AARALM +GLR C SEDLWVEYLRMELT+LNKLKARKV LGED+G+L R + Sbjct: 158 NLNVTAARALMLNGLRVCSNSEDLWVEYLRMELTFLNKLKARKVALGEDKGSLVRDTKTV 217 Query: 363 KEEQWRDENKELFIVLDDKREEDKLSNLHDG------DSKEKLDLFRKQGLSVLQTVYGG 524 ++EQW+DENKELF+ LD+K +K N D D EK+D +++G +VLQT+Y G Sbjct: 218 EDEQWKDENKELFMSLDEKEGNEKEENDEDSIVEDVEDVTEKVDFLKEKGSNVLQTIYSG 277 Query: 525 SIRALPSSFSLRTKFLDILEATDLCHSEDMRN 620 ++ A+PSSF LR +FL+ILEATDL HS++MRN Sbjct: 278 AVEAIPSSFDLRKRFLEILEATDLAHSDEMRN 309 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,611,782 Number of Sequences: 27288 Number of extensions: 304298 Number of successful extensions: 1024 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 972 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1019 length of database: 11,516,596 effective HSP length: 95 effective length of database: 8,924,236 effective search space used: 990590196 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18264438|gb|BM412808.1|BM412808 EST587135 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG61O17 5' end, mRNA sequence (763 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g48050.1 regulatory protein, putative / contains Pfam prof... 260 5e-88 >At1g48050.1 regulatory protein, putative / contains Pfam profile: PF02197 Regulatory subunit of type II PKA R-subunit; supported by cDNA: gi_12006421_gb_AF283758.1_AF283758 Length = 680 Score = 260 bits (664), Expect(3) = 5e-88 Identities = 115/195 (58%), Positives = 161/195 (81%) Frame = +2 Query: 2 MSVFSNKSSSKVVYVESPTSLLGALRTRNISPVTIYRGDLEISAQLKIKVWVYKKTSEEK 181 +++FS+ + +K V V+SP SLLG+L+TR ++PVT++RGDLEI+ +KIKVWVYKK +EE+ Sbjct: 184 LTLFSSNAIAKTVNVDSPLSLLGSLKTRRVAPVTLFRGDLEINPTMKIKVWVYKKVAEER 243 Query: 182 FPTLKKYSERTPTTDKFGAHDIKVEYENKIIEDPNKVVPPEQRIKGFQYGPQVVPISSAE 361 PTLK YS++ P TDKF H++KV+Y+ K+ + +V+ PE+RIKGF+YGPQV+PIS + Sbjct: 244 LPTLKMYSDKAPPTDKFAKHEVKVDYDYKVTAESTEVIAPEERIKGFRYGPQVIPISPDQ 303 Query: 362 LEAVKFKPEKSVKLLGFTDSSNIMRHYYLKDVNIFIAEPGNKNAILALSALARAMKEMNK 541 +E +KFK +K +KLLGFT++SNI+RHYY+KDVNI + +P + ++LA+SA+AR MKE NK Sbjct: 304 IETLKFKTDKGMKLLGFTEASNILRHYYMKDVNIVVPDPSKEKSVLAVSAIAREMKETNK 363 Query: 542 VAIVRCVWRQGQGNV 586 VAIVRCVWR GQGNV Sbjct: 364 VAIVRCVWRNGQGNV 378 Score = 66.2 bits (160), Expect(3) = 5e-88 Identities = 29/39 (74%), Positives = 34/39 (86%) Frame = +3 Query: 591 VGVLTPNVSDKDNTPDSFYFNILPFAEDVRGFPVSFFQQ 707 VGVLTPNVS++D+TPDSFYFN+LPFAEDVR FP F + Sbjct: 380 VGVLTPNVSERDDTPDSFYFNVLPFAEDVREFPFPSFNK 418 Score = 37.7 bits (86), Expect(3) = 5e-88 Identities = 16/27 (59%), Positives = 21/27 (77%) Frame = +1 Query: 682 DFQFPSFSNLPSSMQPNEKQQDAADKL 762 +F FPSF+ LPSS +P+E+QQ AD L Sbjct: 410 EFPFPSFNKLPSSWKPDEQQQAVADNL 436 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,967,208 Number of Sequences: 27288 Number of extensions: 384188 Number of successful extensions: 1075 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 1037 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1075 length of database: 11,516,596 effective HSP length: 97 effective length of database: 8,869,660 effective search space used: 1383666960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18264423|gb|BM412793.1|BM412793 EST587120 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG61M9 5' end, mRNA sequence (736 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g07950.1 expressed protein / ;supported by full-length cD... 339 1e-93 >At3g07950.1 expressed protein / ;supported by full-length cDNA: Ceres:13017. Length = 304 Score = 339 bits (869), Expect = 1e-93 Identities = 158/234 (67%), Positives = 195/234 (82%) Frame = +3 Query: 6 TVYGAIISTIGLLFLGKLLEPIWGSREFLKFIFIVNFLTSVFVFITAISLYYVTRLEIYL 185 +VYG + ST+ LLF+GK LEP+WGS EFLKFIF+VNFLT + VF+TAI+LYY+TRLE+YL Sbjct: 63 SVYGVVFSTVSLLFMGKFLEPVWGSTEFLKFIFVVNFLTYLCVFVTAIALYYITRLEVYL 122 Query: 186 YMPISGFQGVLSGFLVGVKQIMPDQELSILKLKAKWLPSLALLFSIAISFFTADSVSYLP 365 YMP +GF GVL+G LVG+KQI+PDQE+ +LK+KAKWLPS+ L+ SIA SFFT DS +YLP Sbjct: 123 YMPFAGFHGVLAGLLVGIKQIIPDQEILLLKIKAKWLPSIMLILSIASSFFTLDSAAYLP 182 Query: 366 TIVFGTYLGWIYLRYWQKKPETKLKGDPSDEFSFSSFFPEFLRPVIDPIATIFERMLCGR 545 T++FGTY+GW+YLRY Q++PETKL+GDPSD+F+FS+FFPE LRPVIDPIA IF RMLCGR Sbjct: 183 TLIFGTYMGWLYLRYLQRRPETKLRGDPSDDFAFSTFFPELLRPVIDPIALIFHRMLCGR 242 Query: 546 RSETSNEERGYTLGGSTLPGSDPIEASRRRERSARALEERLAAELLASGKKGEE 707 + TS E+ Y+ G+ LPGSD EASRRRER ARALEERL E L + +E Sbjct: 243 SNATS-EDHDYSTSGAPLPGSDSAEASRRRERGARALEERLGTERLVPARNKDE 295 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,165,196 Number of Sequences: 27288 Number of extensions: 391580 Number of successful extensions: 1334 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 1273 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1332 length of database: 11,516,596 effective HSP length: 97 effective length of database: 8,869,660 effective search space used: 1303840020 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18264401|gb|BM412771.1|BM412771 EST587098 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG61G19 5' end, mRNA sequence (593 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g04780.1 hypothetical protein / 181 2e-46 >At4g04780.1 hypothetical protein / Length = 381 Score = 181 bits (460), Expect = 2e-46 Identities = 95/121 (78%), Positives = 101/121 (82%), Gaps = 1/121 (0%) Frame = +2 Query: 2 NTFGTLQRDAPPVRLSPNYPEPPPANP-TEDSANVAEQPKQMSAAFVKAAKQQFDVLVAA 178 N FGTLQRDAPPV+LSPNYPEPP T+D+ EQPKQ+SA VKAAK QFD LVAA Sbjct: 262 NAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQLSAGLVKAAK-QFDALVAA 320 Query: 179 LPLSDGSEEAQLKRIAELQAENDAVGQELQKQLEAAEKELKQVQELFNQATDNCLNLKKP 358 LPLS+G E AQLKRIAELQ END VGQELQKQLEAAEKELKQVQELF QA DNCLN+KKP Sbjct: 321 LPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEAAEKELKQVQELFGQAADNCLNMKKP 380 Query: 359 E 361 E Sbjct: 381 E 381 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,582,441 Number of Sequences: 27288 Number of extensions: 305000 Number of successful extensions: 1361 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 1142 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1346 length of database: 11,516,596 effective HSP length: 94 effective length of database: 8,951,524 effective search space used: 922006972 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18264365|gb|BM412735.1|BM412735 EST587062 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG61A11 5' end, mRNA sequence (627 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g28120.1 expressed protein / ;supported by full-length cDN... 262 9e-71 >At1g28120.1 expressed protein / ;supported by full-length cDNA: Ceres:106626. Length = 306 Score = 262 bits (670), Expect = 9e-71 Identities = 125/195 (64%), Positives = 158/195 (80%) Frame = +3 Query: 42 LKLMTGKKYKDDDIMQQHSAIQAEQAVKVPFLGDKEPLSSLEAEYHLGNSIVLEKIKVLS 221 + + G+++ + ++ + Q E+A KVP++GDKEPLSSL AEY G+ I+LEKIK+L Sbjct: 18 ISAIKGEEWGNCSSVEDQPSFQEEEAAKVPYVGDKEPLSSLAAEYQSGSPILLEKIKILD 77 Query: 222 EQYAAIRRTRGDGNCFFRSFMFGYLEHILESQDHNEVQHIKSNIEECKKTLQSLGYAEFT 401 QY IRRTRGDGNCFFRSFMF YLEHILESQD EV IK N+E+C+KTLQ+LGY +FT Sbjct: 78 SQYIGIRRTRGDGNCFFRSFMFSYLEHILESQDRAEVDRIKVNVEKCRKTLQNLGYTDFT 137 Query: 402 FEDFFALFLEQLDSVLSGSEDSISHDELLCRSRDPSISDYGVMFFRFVTSGEIRKRSEFF 581 FEDFFALFLEQLD +L G+E+SIS+DEL+ RSRD S+SDY VMFFRFVT+G+IR R++FF Sbjct: 138 FEDFFALFLEQLDDILQGTEESISYDELVNRSRDQSVSDYIVMFFRFVTAGDIRTRADFF 197 Query: 582 EPFILRLNNTSVEQF 626 EPFI L+N +V+QF Sbjct: 198 EPFITGLSNATVDQF 212 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,430,847 Number of Sequences: 27288 Number of extensions: 282497 Number of successful extensions: 864 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 836 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 864 length of database: 11,516,596 effective HSP length: 95 effective length of database: 8,924,236 effective search space used: 1008438668 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18264348|gb|BM412729.1|BM412729 EST587045 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG60N20 5' end, mRNA sequence (751 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g39690.1 putative protein / ; supported by cDNA: gi_13605... 309 9e-85 At1g67230.1 nuclear matrix constituent protein 1, putative / ... 48 5e-06 >At4g39690.1 putative protein / ; supported by cDNA: gi_13605658_gb_AF361810.1_AF361810 Length = 650 Score = 309 bits (792), Expect(2) = 9e-85 Identities = 156/238 (65%), Positives = 196/238 (81%) Frame = +2 Query: 2 YISKDGKLVLDVLQVIHETESRQAELDARLFAEEKKYMKERYEKELKDARARELMYAERE 181 Y+++DGKLVLD L IH E +QA LDA++FAEE + +KE+YE EL+D RARELM E Sbjct: 318 YMTEDGKLVLDFLAAIHAAEKQQAHLDAQVFAEELRALKEKYENELRDLRARELMRIEEA 377 Query: 182 ALLDKELKKERAKAIAALKSLKEKLEEEHKTELEEKEDEAELKLKKAQELGKAQLDAAIA 361 A+LDKELK+ER KA AA+K+++E++E++ K ELE+KE EA+L L KA+EL KA++ + IA Sbjct: 378 AILDKELKRERTKAAAAIKAIQERMEDKLKAELEQKETEAQLALSKAEELAKAEMISTIA 437 Query: 362 SEKASQIEKMAEANLHINALCMAFYARSEEVRQTHSVHKLALGVLALEDALSRGLPIQKE 541 EKA+QIEKMAEA+L+I AL MAFYARSEE RQ+HSVHKLALG LAL+D LS+GLP+QKE Sbjct: 438 KEKAAQIEKMAEADLNIKALSMAFYARSEEARQSHSVHKLALGALALDDTLSKGLPVQKE 497 Query: 542 LENLHTSLEGIDNNSLLDVVLSSLPEETQRYGSDTVLQLNHKFDTLKGTLRHFSLIPP 715 ++ L T LEG +S+L +VLSSLPEE + G+DTVLQLN KFDTLKGTLRHFSLIPP Sbjct: 498 IDTLQTYLEGTHKDSILGLVLSSLPEEARSNGTDTVLQLNQKFDTLKGTLRHFSLIPP 555 Score = 22.3 bits (46), Expect(2) = 9e-85 Identities = 9/10 (90%), Positives = 9/10 (90%) Frame = +1 Query: 721 GGGILTHSLA 750 GGGIL HSLA Sbjct: 557 GGGILAHSLA 566 >At1g67230.1 nuclear matrix constituent protein 1, putative / similar to nuclear matrix constituent protein 1 GI:2190186 from [Daucus carota] Length = 1132 Score = 48.1 bits (113), Expect = 5e-06 Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 4/102 (3%) Frame = +2 Query: 53 ETESRQAELDARLFAEEKKYMKERYEKELKDARARELMYAE----REALLDKELKKERAK 220 E R L+ +EK+ E E+EL+ + +AE ++L K+ + ER++ Sbjct: 547 EKLERHIHLEEERLKKEKQAANENMERELETLEVAKASFAETMEYERSMLSKKAESERSQ 606 Query: 221 AIAALKSLKEKLEEEHKTELEEKEDEAELKLKKAQELGKAQL 346 + ++ K KLE + +T LEEKE E + K K +E + +L Sbjct: 607 LLHDIEMRKRKLESDMQTILEEKERELQAKKKLFEEEREKEL 648 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,171,691 Number of Sequences: 27288 Number of extensions: 391210 Number of successful extensions: 3075 Number of sequences better than 1.0e-05: 4 Number of HSP's better than 0.0 without gapping: 2175 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2639 length of database: 11,516,596 effective HSP length: 97 effective length of database: 8,869,660 effective search space used: 1348188320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18264301|gb|BM412671.1|BM412671 EST586998 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG60F2 5' end, mRNA sequence (637 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g17690.1 expressed protein / ; supported by cDNA: gi_15810... 298 1e-81 >At1g17690.1 expressed protein / ; supported by cDNA: gi_15810522_gb_AY056300.1_ Length = 754 Score = 298 bits (764), Expect = 1e-81 Identities = 141/213 (66%), Positives = 176/213 (82%), Gaps = 4/213 (1%) Frame = +3 Query: 9 YLDGQAPFYRQSIILSSHINPDINGLFNHHCLNHEGKVKLASEYKGVLPKVVLQIRQIYE 188 YLDG A FYRQSIILSS++ P++N LF HCLN++GK+K+A EYKGVL KV+L +RQIYE Sbjct: 527 YLDGHARFYRQSIILSSYLTPEMNSLFGRHCLNYKGKMKMACEYKGVLEKVLLPVRQIYE 586 Query: 189 RFDANTAEDADDARFDYFTKKVFPKIKDSTQGGIMLFISSYFEFIRVRNFLKSQEASFCL 368 RFDA + DDAR +YFTKK+FPKIKDS QGG+M+FI SYFEF+R+RNFL +Q SFCL Sbjct: 587 RFDAASITQVDDARLEYFTKKIFPKIKDSVQGGVMIFIHSYFEFVRLRNFLNTQNTSFCL 646 Query: 369 LGEYTEQSDISRARGWFFDGKKKIMLYTERAHFYHRYKIRGIQNLIIYSLPERKEFYPEV 548 LG+Y + +DISRAR FF G +KIMLYTERA+FY RYKIRGI+NLI+YSLPERKEFYPE+ Sbjct: 647 LGDYAKNADISRAREQFFVGSRKIMLYTERAYFYKRYKIRGIKNLILYSLPERKEFYPEI 706 Query: 549 VNLLQGSA----CTVLFSRYDQLRLDRIVGTAA 635 +N+L+ + T LFSR+D L+L+RIVG+ + Sbjct: 707 MNMLEEGSHDMMSTALFSRFDMLQLERIVGSTS 739 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,706,963 Number of Sequences: 27288 Number of extensions: 288183 Number of successful extensions: 754 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 734 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 753 length of database: 11,516,596 effective HSP length: 95 effective length of database: 8,924,236 effective search space used: 1035211376 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|18264265|gb|BM412635.1|BM412635 EST586962 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG60N15 5' end, mRNA sequence (785 letters) Database: ../ATH1_TIGR.pep 27,288 sequences; 11,516,596 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g42990.1 bZIP family transcription factor / contains Pfam ... 151 3e-37 At2g40950.1 bZIP family transcription factor / similar to Atb... 50 1e-06 At3g17610.1 bZIP family transcription factor / similar to TGA... 47 9e-06 >At1g42990.1 bZIP family transcription factor / contains Pfam profile: PF00170: bZIP transcription factor; supported by cDNA: gi_15028322_gb_AY045964.1_ Length = 295 Score = 151 bits (382), Expect = 3e-37 Identities = 103/247 (41%), Positives = 137/247 (54%), Gaps = 16/247 (6%) Frame = +2 Query: 11 EQLLMNDDDFGLVS----DPQFAAESLSDFLVDSPLHSDHSHSPAEQAIGFSDPKVSSAD 178 E LMND++ S D Q ++ ++D LVD P S A + D ++ D Sbjct: 47 ENQLMNDENHQEESFVELDQQSVSDFIADLLVDYPTSDSGSVDLAADKVLTVDSPAAADD 106 Query: 179 QDKH--------KVSQSPS---DGDDELNNHDPVDKKRKRQLRNRDAAVRSRERKKLYVR 325 K K + S S D DDE + D V KKR+R++RNRDAAVRSRERKK YV+ Sbjct: 107 SGKENSDLVVEKKSNDSGSEIHDDDDEEGDDDAVAKKRRRRVRNRDAAVRSRERKKEYVQ 166 Query: 326 DLELKSRYFESECKRLGFVLQCCLAENQALRFSLHNSSANGVS-MTKQESAVLFLESLLL 502 DLE KS+Y E EC RLG +L+C +AENQ+LR+ L + N + M+KQESAVL LESLLL Sbjct: 167 DLEKKSKYLERECLRLGRMLECFVAENQSLRYCLQKGNGNNTTMMSKQESAVLLLESLLL 226 Query: 503 GSLLWFLGITCLLILPSQTWSVPEESQGSRNHGLLVPIKEGKKTSRILLFLSFMMSKRCK 682 GSLLW LG+ + + P + + + +L + K S +S+RCK Sbjct: 227 GSLLWLLGVNFICLFPYMSHTKCCLLRPEPEKLVLNGLGSSSKPSYT------GVSRRCK 280 Query: 683 ASRSRMK 703 SR RMK Sbjct: 281 GSRPRMK 287 >At2g40950.1 bZIP family transcription factor / similar to AtbZIP transcription factor GI:17065880 from [Arabidopsis thaliana]; contains Pfam profile: bZIP transcription factor PF00170 Length = 721 Score = 50.1 bits (118), Expect = 1e-06 Identities = 31/79 (39%), Positives = 41/79 (51%) Frame = +2 Query: 191 KVSQSPSDGDDELNNHDPVDKKRKRQLRNRDAAVRSRERKKLYVRDLELKSRYFESECKR 370 K +S D D + +KKR R +RNR++A SR+RKK YV +LE K R S Sbjct: 210 KYRRSGEDADASAVTGEEDEKKRARLMRNRESAQLSRQRKKHYVEELEEKVRNMHSTITD 269 Query: 371 LGFVLQCCLAENQALRFSL 427 L + +AEN LR L Sbjct: 270 LNGKISYFMAENATLRQQL 288 >At3g17610.1 bZIP family transcription factor / similar to TGACG-motif binding factor GI:2934884 from [Glycine max]; contains Pfam profile: PF00170 bZIP transcription factor; supported by full-length cDNA: Ceres: 35429. Length = 135 Score = 47.4 bits (111), Expect = 9e-06 Identities = 38/116 (32%), Positives = 54/116 (45%), Gaps = 26/116 (22%) Frame = +2 Query: 167 SSADQDKHKVSQSP-----SDGDDELNN------------------HDPVDKKR---KRQ 268 SS+ KHK + S DD +NN +PVDK+ KR Sbjct: 12 SSSSHKKHKTAAGSTCVLSSSADDGVNNPELDQTQNGVSTAKRRRGRNPVDKEYRSLKRL 71 Query: 269 LRNRDAAVRSRERKKLYVRDLELKSRYFESECKRLGFVLQCCLAENQALRFSLHNS 436 LRNR +A ++RERKK+YV DLE ++ ++ +L + EN LR L N+ Sbjct: 72 LRNRVSAQQARERKKVYVSDLESRANELQNNNDQLEEKISTLTNENTMLRKMLINT 127 Database: ../ATH1_TIGR.pep Posted date: Aug 20, 2002 9:10 AM Number of letters in database: 11,516,596 Number of sequences in database: 27,288 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,382,418 Number of Sequences: 27288 Number of extensions: 426396 Number of successful ext