Lettuce - Sunflower - Tomato - Corn COS candidates.
Results of BLAST search: raw and parsed data.
Detailed explanation for parsed data see tcl_blast_parser_123_V007.tcl web page.
All data derived from BLAST searches and clustering analysis are represented at CGPDP on the table COS_markers and graphically.
Details of the search you can find here. Download the set of 2185 Arabidopsis sequences.
For data usage see disclaimer .


Lettuce
Sunflower
Tomato
Corn
sequences in
fasta format
COS_Lettuce_CGPDD.fasta
COS_Sunflower_CGPDD.fasta
COS_Tomato_CGPDD.fasta
COS_Corn_CGPDD.fasta
blastx against
Arabidopsis
ORFs
(no filter)
COS_Lettuce_CGPDD_vs_ATH1_pep.blastX
COS_Lettuce_CGPDD_vs_ATH1_pep.blastX.all_hits
COS_Lettuce_CGPDD_vs_ATH1_pep.blastX.best_hit
COS_Lettuce_CGPDD_vs_ATH1_pep.blastX.two_hits
COS_Lettuce_CGPDD_vs_ATH1_pep.blastX.blast_stat
COS_Lettuce_CGPDD_vs_ATH1_pep.blastX.id_list
COS_Lettuce_CGPDD_vs_ATH1_pep.blastX.matrix
COS_Lettuce_CGPDD_vs_ATH1_pep.blastX.adj_list

COS_Sunflower_CGPDD_vs_ATH1_pep.blastX
COS_Sunflower_CGPDD_vs_ATH1_pep.blastX.all_hits
COS_Sunflower_CGPDD_vs_ATH1_pep.blastX.best_hit
COS_Sunflower_CGPDD_vs_ATH1_pep.blastX.two_hits
COS_Sunflower_CGPDD_vs_ATH1_pep.blastX.blast_stat
COS_Sunflower_CGPDD_vs_ATH1_pep.blastX.id_list
COS_Sunflower_CGPDD_vs_ATH1_pep.blastX.matrix
COS_Sunflower_CGPDD_vs_ATH1_pep.blastX.adj_list
COS_Tomato_CGPDD_vs_ATH1_pep.blastX
COS_Tomato_CGPDD_vs_ATH1_pep.blastX.all_hits
COS_Tomato_CGPDD_vs_ATH1_pep.blastX.best_hit
COS_Tomato_CGPDD_vs_ATH1_pep.blastX.two_hits
COS_Tomato_CGPDD_vs_ATH1_pep.blastX.blast_stat
COS_Tomato_CGPDD_vs_ATH1_pep.blastX.id_list
COS_Tomato_CGPDD_vs_ATH1_pep.blastX.matrix
COS_Tomato_CGPDD_vs_ATH1_pep.blastX.adj_list
COS_Corn_CGPDD_vs_ATH1_pep.blastX
COS_Corn_CGPDD_vs_ATH1_pep.blastX.all_hits
COS_Corn_CGPDD_vs_ATH1_pep.blastX.best_hit
COS_Corn_CGPDD_vs_ATH1_pep.blastX.two_hits
COS_Corn_CGPDD_vs_ATH1_pep.blastX.blast_stat
COS_Corn_CGPDD_vs_ATH1_pep.blastX.id_list
COS_Corn_CGPDD_vs_ATH1_pep.blastX.matrix
COS_Corn_CGPDD_vs_ATH1_pep.blastX.adj_list

blastx against
Arabidopsis
ORFs
(with filter)
COS_Lettuce_CGPDD_vs_ATH1_pep.blastXF
COS_Lettuce_CGPDD_vs_ATH1_pep.blastXF.all_hits
COS_Lettuce_CGPDD_vs_ATH1_pep.blastXF.best_hit
COS_Lettuce_CGPDD_vs_ATH1_pep.blastXF.two_hits
COS_Lettuce_CGPDD_vs_ATH1_pep.blastXF.blast_stat
COS_Lettuce_CGPDD_vs_ATH1_pep.blastXF.id_list
COS_Lettuce_CGPDD_vs_ATH1_pep.blastXF.matrix
COS_Lettuce_CGPDD_vs_ATH1_pep.blastXF.adj_list

COS_Sunflower_CGPDD_vs_ATH1_pep.blastXF
COS_Sunflower_CGPDD_vs_ATH1_pep.blastXF.all_hits
COS_Sunflower_CGPDD_vs_ATH1_pep.blastXF.best_hit
COS_Sunflower_CGPDD_vs_ATH1_pep.blastXF.two_hits
COS_Sunflower_CGPDD_vs_ATH1_pep.blastXF.blast_stat
COS_Sunflower_CGPDD_vs_ATH1_pep.blastXF.id_list
COS_Sunflower_CGPDD_vs_ATH1_pep.blastXF.matrix
COS_Sunflower_CGPDD_vs_ATH1_pep.blastXF.adj_list
COS_Tomato_CGPDD_vs_ATH1_pep.blastXF
COS_Tomato_CGPDD_vs_ATH1_pep.blastXF.all_hits
COS_Tomato_CGPDD_vs_ATH1_pep.blastXF.best_hit
COS_Tomato_CGPDD_vs_ATH1_pep.blastXF.two_hits
COS_Tomato_CGPDD_vs_ATH1_pep.blastXF.blast_stat
COS_Tomato_CGPDD_vs_ATH1_pep.blastXF.id_list
COS_Tomato_CGPDD_vs_ATH1_pep.blastXF.matrix
COS_Tomato_CGPDD_vs_ATH1_pep.blastXF.adj_list
COS_Corn_CGPDD_vs_ATH1_pep.blastXF
COS_Corn_CGPDD_vs_ATH1_pep.blastXF.all_hits
COS_Corn_CGPDD_vs_ATH1_pep.blastXF.best_hit
COS_Corn_CGPDD_vs_ATH1_pep.blastXF.two_hits
COS_Corn_CGPDD_vs_ATH1_pep.blastXF.blast_stat
COS_Corn_CGPDD_vs_ATH1_pep.blastXF.id_list
COS_Corn_CGPDD_vs_ATH1_pep.blastXF.matrix
COS_Corn_CGPDD_vs_ATH1_pep.blastXF.adj_list
blastn against
Arabidopsis
genomic DNA
COS_Lettuce_CGPDD_vs_ATH1_dna.blastN
COS_Lettuce_CGPDD_vs_ATH1_dna.blastN.all_hits
COS_Lettuce_CGPDD_vs_ATH1_dna.blastN.best_hit
COS_Lettuce_CGPDD_vs_ATH1_dna.blastN.blast_stat
COS_Lettuce_CGPDD_vs_ATH1_dna.blastN.adj_list
COS_Sunflower_CGPDD_vs_ATH1_dna.blastN
COS_Sunflower_CGPDD_vs_ATH1_dna.blastN.all_hits
COS_Sunflower_CGPDD_vs_ATH1_dna.blastN.best_hit
COS_Sunflower_CGPDD_vs_ATH1_dna.blastN.blast_stat
COS_Sunflower_CGPDD_vs_ATH1_dna.blastN.adj_list
COS_Tomato_CGPDD_vs_ATH1_dna.blastN COS_Tomato_CGPDD_vs_ATH1_dna.blastN .all_hits
COS_Tomato_CGPDD_vs_ATH1_dna.blastN .best_hit
COS_Tomato_CGPDD_vs_ATH1_dna.blastN .blast_stat
COS_Tomato_CGPDD_vs_ATH1_dna.blastN .adj_list
COS_Corn_CGPDD_vs_ATH1_dna.blastN
COS_Corn_CGPDD_vs_ATH1_dna.blastN.all_hits
COS_Corn_CGPDD_vs_ATH1_dna.blastN.best_hit
COS_Corn_CGPDD_vs_ATH1_dna.blastN.blast_stat
COS_Corn_CGPDD_vs_ATH1_dna.blastN.adj_list
tblastx against
Arabidopsis
genomic DNA
COS_Lettuce_CGPDD_vs_ATH1_dna.tblastX
COS_Lettuce_CGPDD_vs_ATH1_dna.tblastX.all_hits
COS_Lettuce_CGPDD_vs_ATH1_dna.tblastX.best_hit
COS_Lettuce_CGPDD_vs_ATH1_dna.tblastX.blast_stat
COS_Lettuce_CGPDD_vs_ATH1_dna.tblastX.adj_list
COS_Sunflower_CGPDD_vs_ATH1_dna.tblastX
COS_ Sunflower_CGPDD_vs_ATH1_dna.tblastX.all_hits
COS_Sunflower_CGPDD_vs_ATH1_dna.tblastX.best_hit
COS_Sunflower_CGPDD_vs_ATH1_dna.tblastX.blast_stat
COS_Sunflower_CGPDD_vs_ATH1_dna.tblastX.adj_list
COS_Tomato_CGPDD_vs_ATH1_dna.tblastX
COS_Tomato_CGPDD_vs_ATH1_dna.tblastX.all_hits
COS_Tomato_CGPDD_vs_ATH1_dna.tblastX.best_hit
COS_Tomato_CGPDD_vs_ATH1_dna.tblastX.blast_stat
COS_Tomato_CGPDD_vs_ATH1_dna.tblastX.adj_list
COS_Corn_CGPDD_vs_ATH1_dna.tblastX
COS_Corn_CGPDD_vs_ATH1_dna.tblastX.all_hits
COS_Corn_CGPDD_vs_ATH1_dna.tblastX.best_hit
COS_Corn_CGPDD_vs_ATH1_dna.tblastX.blast_stat
COS_Corn_CGPDD_vs_ATH1_dna.tblastX.adj_list
tblastx against
corresponding
EST assembly
COS_Lettuce_CGPDD_vs_Lettuce.tblastX
COS_Lettuce_CGPDD_vs_Lettuce.tblastX.all_hits COS_Lettuce_CGPDD_vs_Lettuce.tblastX.best_hit COS_Lettuce_CGPDD_vs_Lettuce.tblastX. two_hits
COS_Lettuce_CGPDD_vs_Lettuce.tblastX.blast_stat
COS_Lettuce_CGPDD_vs_Lettuce.tblastX.id_list
COS_Lettuce_CGPDD_vs_Lettuce.tblastX.matrix
COS_Lettuce_CGPDD_vs_Lettuce.tblastX.adj_list
COS_Sunflower_CGPDD_vs_Sunflower.tblastX
COS_Sunflower_CGPDD_vs_Sunflower.tblastX.all_hits COS_Sunflower_CGPDD_vs_Sunflower.tblastX.best_hit COS_Sunflower_CGPDD_vs_Sunflower.tblastX.two_hits
COS_Sunflower_CGPDD_vs_Sunflower.tblastX.blast_stat
COS_Sunflower_CGPDD_vs_Sunflower.tblastX.id_list
COS_Sunflower_CGPDD_vs_Sunflower.tblastX.matrix
COS_Sunflower_CGPDD_vs_Sunflower.tblastX.adj_list
COS_Tomato_CGPDD_vs_Tomato.tblastX
COS_Tomato_CGPDD_vs_Tomato.tblastX.all_hits
COS_Tomato_CGPDD_vs_Tomato.tblastX.best_hit
COS_Tomato_CGPDD_vs_Tomato.tblastX .two_hits
COS_Tomato_CGPDD_vs_Tomato.tblastX.blast_stat
COS_Tomato_CGPDD_vs_Tomato.tblastX.id_list
COS_Tomato_CGPDD_vs_Tomato.tblastX.matrix
COS_Tomato_CGPDD_vs_Tomato.tblastX .adj_list
COS_Corn_CGPDD_vs_Corn.tblastX
COS_Corn_CGPDD_vs_Corn.tblastX .all_hits
COS_Corn_CGPDD_vs_Corn.tblastX. best_hit
COS_Corn_CGPDD_vs_Corn.tblastX .two_hits
COS_Corn_CGPDD_vs_Corn.tblastX .blast_stat
COS_Corn_CGPDD_vs_Corn.tblastX .id_list
COS_Corn_CGPDD_vs_Corn.tblastX .matrix
COS_Corn_CGPDD_vs_Corn.tblastX .adj_list

email: Alexander Kozik
email: Richard Michelmore

last modified: December 09 2002